Gcaud1810.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1810.t1
Unique Name	Gcaud1810.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	299

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_23_length_76035_cov_4.613123	contig	NODE_23_length_76035_cov_4.613123:4311..5207 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	192875.XP_004345401.1
PFAMs	Metallophos
Max annot lvl	33154\|Opisthokonta
Evalue	3.16e-08
EggNOG OGs	COG2129@1\|root,2S3P6@2759\|Eukaryota,3A9F4@33154\|Opisthokonta
Description	Calcineurin-like phosphoesterase superfamily domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1810	Gcaud1810	Gracilaria caudata M_176_S67 male	gene	NODE_23_length_76035_cov_4.613123 4311..5207 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1810.t1.start1	Gcaud1810.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_23_length_76035_cov_4.613123 4311..4313 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1810.t1.CDS1	Gcaud1810.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_23_length_76035_cov_4.613123 4311..5207 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1810.t1.exon1	Gcaud1810.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_23_length_76035_cov_4.613123 4311..5207 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1810.t1.stop1	Gcaud1810.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_23_length_76035_cov_4.613123 5205..5207 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1810.t1	Gcaud1810.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_23_length_76035_cov_4.613123 4311..5207 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_23_length_76035_cov_4.613123:4311..5207+
coding sequence from alignment at NODE_23_length_76035_cov_4.613123:4311..5207+

mRNA sequence

>Gcaud1810.t1 ID=Gcaud1810.t1|Name=Gcaud1810.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=299bp
MSPRLSPFMSLSSEHPQAIARNLRLLVMADLGATPQRIAQLSQWLSEHNF
SFTIDAVLVIGVSRTPPPHEYPHQLYAEQGNDSATIAELEQICPRVVYVP
GLHETSASWDTKAGPPLLSSSSVNAISGPAFLTEDLIVVHRRYADGLTEK
PILQLPSSWKETLYAKLRRPRRFRQPPRNSAILLSSSELPNNSTGLSLMR
TVRSLLHLKRSAPDYDLILVVAPSKMQRVPSASNVFKSADRILDPGLFVD
GYFCIIDLQRPDIWDPAKEPEVEEGQLDSEAAWEILRVSRYNLDGVPD*

spliced messenger RNA

>Gcaud1810.t1 ID=Gcaud1810.t1|Name=Gcaud1810.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=897bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:4311..5207+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCTCGTCTATCTCCCTTCATGTCACTCTCATCTGAGCATCCACA
AGCAATCGCTAGAAATCTTCGTTTGCTGGTCATGGCCGATCTTGGCGCCA
CGCCTCAAAGAATAGCACAATTGTCACAATGGCTTTCTGAGCACAATTTT
TCCTTCACAATAGATGCCGTTCTCGTGATTGGTGTATCTAGAACACCTCC
GCCTCATGAATATCCGCATCAACTATACGCGGAACAAGGAAATGACTCAG
CTACTATTGCCGAGCTGGAACAAATCTGCCCTAGAGTTGTTTACGTACCT
GGCTTGCATGAGACTTCTGCCAGTTGGGATACCAAAGCCGGCCCGCCTCT
CTTATCTTCGTCCAGTGTTAATGCAATCTCAGGACCTGCATTTCTCACAG
AAGATCTAATCGTCGTTCATCGTCGCTACGCAGATGGCTTAACAGAGAAA
CCAATTCTTCAGCTACCGTCATCCTGGAAGGAAACCCTTTACGCCAAACT
AAGGCGCCCCCGTCGATTTCGACAACCACCTCGAAACTCTGCCATTTTAC
TGAGCAGCAGCGAACTTCCAAACAATTCCACAGGCTTGTCCCTGATGCGT
ACCGTAAGATCTTTGTTGCATTTGAAACGAAGTGCTCCGGATTACGATCT
TATTCTTGTTGTTGCTCCCTCCAAAATGCAACGAGTACCATCAGCGTCTA
ACGTTTTCAAATCTGCTGATCGCATTTTGGATCCAGGTCTTTTTGTGGAT
GGATACTTTTGCATCATTGATTTGCAAAGACCAGATATCTGGGACCCAGC
AAAAGAACCAGAAGTGGAGGAAGGGCAACTGGATTCGGAAGCTGCGTGGG
AAATCCTTCGGGTTTCTAGATACAATTTGGATGGCGTGCCCGATTAA

protein sequence of Gcaud1810.t1

>Gcaud1810.t1 ID=Gcaud1810.t1|Name=Gcaud1810.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=299bp
MSPRLSPFMSLSSEHPQAIARNLRLLVMADLGATPQRIAQLSQWLSEHNF
SFTIDAVLVIGVSRTPPPHEYPHQLYAEQGNDSATIAELEQICPRVVYVP
GLHETSASWDTKAGPPLLSSSSVNAISGPAFLTEDLIVVHRRYADGLTEK
PILQLPSSWKETLYAKLRRPRRFRQPPRNSAILLSSSELPNNSTGLSLMR
TVRSLLHLKRSAPDYDLILVVAPSKMQRVPSASNVFKSADRILDPGLFVD
GYFCIIDLQRPDIWDPAKEPEVEEGQLDSEAAWEILRVSRYNLDGVPD*

mRNA from alignment at NODE_23_length_76035_cov_4.613123:4311..5207+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1810.t1 ID=Gcaud1810.t1|Name=Gcaud1810.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=897bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:4311..5207+ (Gracilaria caudata M_176_S67 male)
ATGTCACCTCGTCTATCTCCCTTCATGTCACTCTCATCTGAGCATCCACA
AGCAATCGCTAGAAATCTTCGTTTGCTGGTCATGGCCGATCTTGGCGCCA
CGCCTCAAAGAATAGCACAATTGTCACAATGGCTTTCTGAGCACAATTTT
TCCTTCACAATAGATGCCGTTCTCGTGATTGGTGTATCTAGAACACCTCC
GCCTCATGAATATCCGCATCAACTATACGCGGAACAAGGAAATGACTCAG
CTACTATTGCCGAGCTGGAACAAATCTGCCCTAGAGTTGTTTACGTACCT
GGCTTGCATGAGACTTCTGCCAGTTGGGATACCAAAGCCGGCCCGCCTCT
CTTATCTTCGTCCAGTGTTAATGCAATCTCAGGACCTGCATTTCTCACAG
AAGATCTAATCGTCGTTCATCGTCGCTACGCAGATGGCTTAACAGAGAAA
CCAATTCTTCAGCTACCGTCATCCTGGAAGGAAACCCTTTACGCCAAACT
AAGGCGCCCCCGTCGATTTCGACAACCACCTCGAAACTCTGCCATTTTAC
TGAGCAGCAGCGAACTTCCAAACAATTCCACAGGCTTGTCCCTGATGCGT
ACCGTAAGATCTTTGTTGCATTTGAAACGAAGTGCTCCGGATTACGATCT
TATTCTTGTTGTTGCTCCCTCCAAAATGCAACGAGTACCATCAGCGTCTA
ACGTTTTCAAATCTGCTGATCGCATTTTGGATCCAGGTCTTTTTGTGGAT
GGATACTTTTGCATCATTGATTTGCAAAGACCAGATATCTGGGACCCAGC
AAAAGAACCAGAAGTGGAGGAAGGGCAACTGGATTCGGAAGCTGCGTGGG
AAATCCTTCGGGTTTCTAGATACAATTTGGATGGCGTGCCCGATTAA

Coding sequence (CDS) from alignment at NODE_23_length_76035_cov_4.613123:4311..5207+

>Gcaud1810.t1 ID=Gcaud1810.t1|Name=Gcaud1810.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=897bp|location=Sequence derived from alignment at NODE_23_length_76035_cov_4.613123:4311..5207+ (Gracilaria caudata M_176_S67 male)
ATGTCACCTCGTCTATCTCCCTTCATGTCACTCTCATCTGAGCATCCACA
AGCAATCGCTAGAAATCTTCGTTTGCTGGTCATGGCCGATCTTGGCGCCA
CGCCTCAAAGAATAGCACAATTGTCACAATGGCTTTCTGAGCACAATTTT
TCCTTCACAATAGATGCCGTTCTCGTGATTGGTGTATCTAGAACACCTCC
GCCTCATGAATATCCGCATCAACTATACGCGGAACAAGGAAATGACTCAG
CTACTATTGCCGAGCTGGAACAAATCTGCCCTAGAGTTGTTTACGTACCT
GGCTTGCATGAGACTTCTGCCAGTTGGGATACCAAAGCCGGCCCGCCTCT
CTTATCTTCGTCCAGTGTTAATGCAATCTCAGGACCTGCATTTCTCACAG
AAGATCTAATCGTCGTTCATCGTCGCTACGCAGATGGCTTAACAGAGAAA
CCAATTCTTCAGCTACCGTCATCCTGGAAGGAAACCCTTTACGCCAAACT
AAGGCGCCCCCGTCGATTTCGACAACCACCTCGAAACTCTGCCATTTTAC
TGAGCAGCAGCGAACTTCCAAACAATTCCACAGGCTTGTCCCTGATGCGT
ACCGTAAGATCTTTGTTGCATTTGAAACGAAGTGCTCCGGATTACGATCT
TATTCTTGTTGTTGCTCCCTCCAAAATGCAACGAGTACCATCAGCGTCTA
ACGTTTTCAAATCTGCTGATCGCATTTTGGATCCAGGTCTTTTTGTGGAT
GGATACTTTTGCATCATTGATTTGCAAAGACCAGATATCTGGGACCCAGC
AAAAGAACCAGAAGTGGAGGAAGGGCAACTGGATTCGGAAGCTGCGTGGG
AAATCCTTCGGGTTTCTAGATACAATTTGGATGGCGTGCCCGATTAA