Gcaud234.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud234.t1
Unique NameGcaud234.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length516
Homology
BLAST of Gcaud234.t1 vs. uniprot
Match: A0A2V3IBT3_9FLOR (Uncharacterized protein n=4 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBT3_9FLOR)

HSP 1 Score: 401 bits (1031), Expect = 4.820e-131
Identity = 218/481 (45.32%), Postives = 306/481 (63.62%), Query Frame = 0
Query:   37 DQEKVGAIWKDSCTEGSFLVQAKSSPNNLNEFEAHWHANLSCLDVYEPDLF--LDPRRTVLKCGSKPGTFRYRGIGVRVENCVDLSRIYDVYYKSTLRCTEKRRAEFEHVSTTVSQFLRWVVSTSASSREDLWKDEALFKSVANRALVESFVELFITRSSPGTVRAKALALKRVCDIGFVIVGNEITRCRLKLVSVVLQNIARAARRSYRAACQSRKSMDKRSISMKLLSTAQSNVNHLRRKAVSALDFLMRSISHETNHGF--ASRSIVIASLENWYRNFIGLLMLSSGGQRPQVFSQLQVPTKEEFRSLNRLSEHLSFIELRTLDEKRPRHVDLPYLVLPVLILPYLRFHSDVIRPTIQHTVGNRDAGPFRPLLLHTTTALGLKPQQITTVLRSFMSFQDCRLRLVTSMDLRRHYATMMLRSYRQREVFPGLDEEQFLKKLAQQMNTSPEQLKRTYIAHVDLRITDETAALAKFWGRFL 513
            D E + A+ +      S   + K +      +E+ W+  L  L+   P LF  L+ R       + PGTF ++GIG  V+NC+ L R+Y+ YYK  L+   K  A F H+STTVSQFLRW + TS  SR+D+WK+  LF+++A++ +V  F+E+ + RSSPGTV+ +  ++KRVCD+G +I G+     RLKLV +VLQ++  A+R +YR  CQ++K +  RS+          +++ ++R+A+ AL+F MRS  H        A+R  + + L+ W  NF+GL+ML SGGQRPQVFS LQ+P +EEF+ L   +E  S+IELRT  EKRPR++DLP+++LPV ++PYL FH   +RP IQ   G  D G F PL + + TALG KP Q+T  L+ F+S        VTSMDLRR YAT MLR+YRQ+ +F  L E  FL+KLAQQMNTS EQLKRTY+AH   +I  ETA + K+WG  L
Sbjct:  105 DDEFISAVAESEAI--SLYAELKGTYLLERSYESRWYEQLRHLEKCHPKLFELLEVR------DAGPGTFYFKGIGATVKNCLGLRRVYETYYKPRLQNNGKGAAAFTHLSTTVSQFLRWAICTSTCSRKDVWKEHVLFRALADQKVVNRFIEMLMLRSSPGTVKNRITSMKRVCDVGVIISGDTAIGMRLKLVLIVLQHMENASRCAYRKRCQAKKDLINRSV--------PRHLDLIKRRALGALNFTMRSFWHRKQRSGTDAARKSMRSYLQIWNMNFMGLIMLVSGGQRPQVFSGLQLPNEEEFQQLTFQAEQSSYIELRTGTEKRPRYIDLPFMILPVTVMPYLTFHVKYMRPEIQEAAGRSDEGLFEPLFIDSKTALGFKPSQVTRRLQLFLSSHGIERGCVTSMDLRRDYATRMLRNYRQKCIFSNLTENAFLEKLAQQMNTSVEQLKRTYVAHSS-KIISETAEVVKYWGAVL 568          
BLAST of Gcaud234.t1 vs. uniprot
Match: A0A2V3ICE4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICE4_9FLOR)

HSP 1 Score: 78.2 bits (191), Expect = 7.510e-14
Identity = 53/147 (36.05%), Postives = 71/147 (48.30%), Query Frame = 0
Query:  285 MRSISHETNHGF--ASRSIVIASLENWYRNFIGLLMLSSGGQRPQVFSQLQVPTKEEFRSLNRLSEHLSFIELRTLDEKRPRHVDLPYLVLPVLILPYLRFHSDVIRPTIQHTVGNRDAGPFRPLLLHTTTALGLKPQQITTVLRSF 429
            MRS  H        A+R  + + L+ W  NF+GL+ML        VFS LQ+P +EEF+ L   +E  S+IELRT  EKRPR++DLP+++LPV                                    TTALG KP Q+T  L+ F
Sbjct:    1 MRSFWHRKQRSGTDAARKSMRSYLQIWNMNFMGLIMLGVRRTATAVFSGLQLPNEEEFQQLTFQAEQSSYIELRTGTEKRPRYIDLPFMILPV------------------------------------TTALGFKPSQVTRRLQLF 111          
The following BLAST results are available for this feature:
BLAST of Gcaud234.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IBT3_9FLOR4.820e-13145.32Uncharacterized protein n=4 Tax=Gracilariopsis cho... [more]
A0A2V3ICE4_9FLOR7.510e-1436.05Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2399_length_5807_cov_4.808083contigNODE_2399_length_5807_cov_4.808083:2551..4098 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud234.t1Gcaud234.t1Gracilaria caudata M_176_S67 malemRNANODE_2399_length_5807_cov_4.808083 2551..4098 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud234.t1 ID=Gcaud234.t1|Name=Gcaud234.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=516bp
MLFSQSRKRKHADRSAGSGRRPRKRVKTERNVIGSGDQEKVGAIWKDSCT
EGSFLVQAKSSPNNLNEFEAHWHANLSCLDVYEPDLFLDPRRTVLKCGSK
PGTFRYRGIGVRVENCVDLSRIYDVYYKSTLRCTEKRRAEFEHVSTTVSQ
FLRWVVSTSASSREDLWKDEALFKSVANRALVESFVELFITRSSPGTVRA
KALALKRVCDIGFVIVGNEITRCRLKLVSVVLQNIARAARRSYRAACQSR
KSMDKRSISMKLLSTAQSNVNHLRRKAVSALDFLMRSISHETNHGFASRS
IVIASLENWYRNFIGLLMLSSGGQRPQVFSQLQVPTKEEFRSLNRLSEHL
SFIELRTLDEKRPRHVDLPYLVLPVLILPYLRFHSDVIRPTIQHTVGNRD
AGPFRPLLLHTTTALGLKPQQITTVLRSFMSFQDCRLRLVTSMDLRRHYA
TMMLRSYRQREVFPGLDEEQFLKKLAQQMNTSPEQLKRTYIAHVDLRITD
ETAALAKFWGRFLTT*
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