Gcaud234.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud234.t1
Unique Name	Gcaud234.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	516

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2399_length_5807_cov_4.808083	contig	NODE_2399_length_5807_cov_4.808083:2551..4098 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud234	Gcaud234	Gracilaria caudata M_176_S67 male	gene	NODE_2399_length_5807_cov_4.808083 2551..4098 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud234.t1.start1	Gcaud234.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2399_length_5807_cov_4.808083 2551..2553 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud234.t1.CDS1	Gcaud234.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2399_length_5807_cov_4.808083 2551..4098 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud234.t1.exon1	Gcaud234.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2399_length_5807_cov_4.808083 2551..4098 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud234.t1.stop1	Gcaud234.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2399_length_5807_cov_4.808083 4096..4098 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud234.t1	Gcaud234.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2399_length_5807_cov_4.808083 2551..4098 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2399_length_5807_cov_4.808083:2551..4098+
coding sequence from alignment at NODE_2399_length_5807_cov_4.808083:2551..4098+

mRNA sequence

>Gcaud234.t1 ID=Gcaud234.t1|Name=Gcaud234.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=516bp
MLFSQSRKRKHADRSAGSGRRPRKRVKTERNVIGSGDQEKVGAIWKDSCT
EGSFLVQAKSSPNNLNEFEAHWHANLSCLDVYEPDLFLDPRRTVLKCGSK
PGTFRYRGIGVRVENCVDLSRIYDVYYKSTLRCTEKRRAEFEHVSTTVSQ
FLRWVVSTSASSREDLWKDEALFKSVANRALVESFVELFITRSSPGTVRA
KALALKRVCDIGFVIVGNEITRCRLKLVSVVLQNIARAARRSYRAACQSR
KSMDKRSISMKLLSTAQSNVNHLRRKAVSALDFLMRSISHETNHGFASRS
IVIASLENWYRNFIGLLMLSSGGQRPQVFSQLQVPTKEEFRSLNRLSEHL
SFIELRTLDEKRPRHVDLPYLVLPVLILPYLRFHSDVIRPTIQHTVGNRD
AGPFRPLLLHTTTALGLKPQQITTVLRSFMSFQDCRLRLVTSMDLRRHYA
TMMLRSYRQREVFPGLDEEQFLKKLAQQMNTSPEQLKRTYIAHVDLRITD
ETAALAKFWGRFLTT*

spliced messenger RNA

>Gcaud234.t1 ID=Gcaud234.t1|Name=Gcaud234.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at NODE_2399_length_5807_cov_4.808083:2551..4098+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTCTCGCAATCCAGGAAGAGGAAGCACGCCGATCGTTCTGCAGG
GAGTGGAAGGAGGCCCAGGAAACGAGTGAAGACAGAAAGGAATGTTATCG
GTTCTGGAGATCAGGAAAAGGTTGGAGCTATTTGGAAGGATTCATGCACA
GAGGGTTCCTTTCTGGTTCAAGCGAAAAGCAGTCCAAATAATTTGAATGA
GTTCGAAGCCCACTGGCATGCTAACCTCAGTTGTTTGGATGTATATGAGC
CGGATCTTTTTCTTGACCCACGCAGAACTGTGCTGAAGTGTGGATCAAAG
CCCGGAACTTTTCGCTACAGGGGGATTGGGGTAAGAGTGGAGAATTGTGT
TGACCTGAGTCGAATATACGATGTTTACTACAAGTCTACGTTAAGGTGCA
CTGAAAAACGAAGAGCAGAATTTGAACATGTCTCGACAACTGTATCGCAG
TTCTTGAGGTGGGTTGTCTCTACCTCGGCTTCCTCGAGGGAAGATCTTTG
GAAGGACGAAGCCCTATTCAAGAGTGTTGCGAACCGAGCACTAGTTGAGT
CTTTTGTGGAACTCTTCATCACGCGAAGCTCTCCAGGCACCGTGAGGGCA
AAAGCTCTTGCTTTGAAACGGGTTTGCGATATCGGCTTTGTAATTGTTGG
AAACGAGATTACTAGATGCCGTTTGAAGCTTGTCTCCGTTGTTCTTCAAA
ATATCGCCCGTGCCGCAAGGCGCTCTTATCGTGCCGCATGTCAAAGCAGG
AAAAGCATGGACAAGCGATCTATTTCGATGAAGTTATTGTCAACTGCTCA
ATCAAACGTGAACCATTTGAGGCGGAAAGCCGTGTCAGCTCTCGATTTCC
TTATGCGTTCCATTTCTCATGAAACAAATCACGGTTTTGCTTCACGATCA
ATCGTTATTGCTTCCTTAGAGAATTGGTATAGGAACTTCATCGGTTTACT
CATGCTTTCTTCTGGGGGACAACGGCCTCAAGTTTTCAGTCAGCTCCAGG
TCCCAACTAAAGAGGAGTTCAGGAGTCTCAACCGCCTATCAGAGCATTTA
TCATTTATCGAACTAAGGACGCTGGATGAGAAGCGACCCCGCCATGTCGA
TCTACCGTATTTGGTTCTACCAGTGTTAATATTGCCGTATCTGAGGTTCC
ACTCGGATGTTATTCGTCCAACGATTCAACACACAGTTGGAAATCGTGAT
GCTGGGCCTTTTAGACCACTTCTGCTGCACACTACCACCGCGCTCGGCCT
TAAGCCTCAGCAAATAACCACTGTGCTGAGAAGCTTCATGTCTTTTCAAG
ATTGCAGGCTTCGTCTTGTTACTTCCATGGATTTGAGAAGACATTACGCG
ACCATGATGCTACGGTCCTATCGTCAACGAGAAGTATTCCCGGGTCTCGA
TGAAGAACAGTTTCTGAAAAAGTTAGCTCAGCAGATGAACACGTCTCCTG
AACAGCTTAAGCGAACCTACATAGCGCACGTAGATTTGCGGATAACAGAT
GAAACGGCTGCGTTGGCAAAGTTTTGGGGGAGGTTTCTGACCACTTAG

protein sequence of Gcaud234.t1

>Gcaud234.t1 ID=Gcaud234.t1|Name=Gcaud234.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=516bp
MLFSQSRKRKHADRSAGSGRRPRKRVKTERNVIGSGDQEKVGAIWKDSCT
EGSFLVQAKSSPNNLNEFEAHWHANLSCLDVYEPDLFLDPRRTVLKCGSK
PGTFRYRGIGVRVENCVDLSRIYDVYYKSTLRCTEKRRAEFEHVSTTVSQ
FLRWVVSTSASSREDLWKDEALFKSVANRALVESFVELFITRSSPGTVRA
KALALKRVCDIGFVIVGNEITRCRLKLVSVVLQNIARAARRSYRAACQSR
KSMDKRSISMKLLSTAQSNVNHLRRKAVSALDFLMRSISHETNHGFASRS
IVIASLENWYRNFIGLLMLSSGGQRPQVFSQLQVPTKEEFRSLNRLSEHL
SFIELRTLDEKRPRHVDLPYLVLPVLILPYLRFHSDVIRPTIQHTVGNRD
AGPFRPLLLHTTTALGLKPQQITTVLRSFMSFQDCRLRLVTSMDLRRHYA
TMMLRSYRQREVFPGLDEEQFLKKLAQQMNTSPEQLKRTYIAHVDLRITD
ETAALAKFWGRFLTT*

mRNA from alignment at NODE_2399_length_5807_cov_4.808083:2551..4098+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud234.t1 ID=Gcaud234.t1|Name=Gcaud234.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1548bp|location=Sequence derived from alignment at NODE_2399_length_5807_cov_4.808083:2551..4098+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTCTCGCAATCCAGGAAGAGGAAGCACGCCGATCGTTCTGCAGG
GAGTGGAAGGAGGCCCAGGAAACGAGTGAAGACAGAAAGGAATGTTATCG
GTTCTGGAGATCAGGAAAAGGTTGGAGCTATTTGGAAGGATTCATGCACA
GAGGGTTCCTTTCTGGTTCAAGCGAAAAGCAGTCCAAATAATTTGAATGA
GTTCGAAGCCCACTGGCATGCTAACCTCAGTTGTTTGGATGTATATGAGC
CGGATCTTTTTCTTGACCCACGCAGAACTGTGCTGAAGTGTGGATCAAAG
CCCGGAACTTTTCGCTACAGGGGGATTGGGGTAAGAGTGGAGAATTGTGT
TGACCTGAGTCGAATATACGATGTTTACTACAAGTCTACGTTAAGGTGCA
CTGAAAAACGAAGAGCAGAATTTGAACATGTCTCGACAACTGTATCGCAG
TTCTTGAGGTGGGTTGTCTCTACCTCGGCTTCCTCGAGGGAAGATCTTTG
GAAGGACGAAGCCCTATTCAAGAGTGTTGCGAACCGAGCACTAGTTGAGT
CTTTTGTGGAACTCTTCATCACGCGAAGCTCTCCAGGCACCGTGAGGGCA
AAAGCTCTTGCTTTGAAACGGGTTTGCGATATCGGCTTTGTAATTGTTGG
AAACGAGATTACTAGATGCCGTTTGAAGCTTGTCTCCGTTGTTCTTCAAA
ATATCGCCCGTGCCGCAAGGCGCTCTTATCGTGCCGCATGTCAAAGCAGG
AAAAGCATGGACAAGCGATCTATTTCGATGAAGTTATTGTCAACTGCTCA
ATCAAACGTGAACCATTTGAGGCGGAAAGCCGTGTCAGCTCTCGATTTCC
TTATGCGTTCCATTTCTCATGAAACAAATCACGGTTTTGCTTCACGATCA
ATCGTTATTGCTTCCTTAGAGAATTGGTATAGGAACTTCATCGGTTTACT
CATGCTTTCTTCTGGGGGACAACGGCCTCAAGTTTTCAGTCAGCTCCAGG
TCCCAACTAAAGAGGAGTTCAGGAGTCTCAACCGCCTATCAGAGCATTTA
TCATTTATCGAACTAAGGACGCTGGATGAGAAGCGACCCCGCCATGTCGA
TCTACCGTATTTGGTTCTACCAGTGTTAATATTGCCGTATCTGAGGTTCC
ACTCGGATGTTATTCGTCCAACGATTCAACACACAGTTGGAAATCGTGAT
GCTGGGCCTTTTAGACCACTTCTGCTGCACACTACCACCGCGCTCGGCCT
TAAGCCTCAGCAAATAACCACTGTGCTGAGAAGCTTCATGTCTTTTCAAG
ATTGCAGGCTTCGTCTTGTTACTTCCATGGATTTGAGAAGACATTACGCG
ACCATGATGCTACGGTCCTATCGTCAACGAGAAGTATTCCCGGGTCTCGA
TGAAGAACAGTTTCTGAAAAAGTTAGCTCAGCAGATGAACACGTCTCCTG
AACAGCTTAAGCGAACCTACATAGCGCACGTAGATTTGCGGATAACAGAT
GAAACGGCTGCGTTGGCAAAGTTTTGGGGGAGGTTTCTGACCACTTAG

Coding sequence (CDS) from alignment at NODE_2399_length_5807_cov_4.808083:2551..4098+

>Gcaud234.t1 ID=Gcaud234.t1|Name=Gcaud234.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1548bp|location=Sequence derived from alignment at NODE_2399_length_5807_cov_4.808083:2551..4098+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTCTCGCAATCCAGGAAGAGGAAGCACGCCGATCGTTCTGCAGG
GAGTGGAAGGAGGCCCAGGAAACGAGTGAAGACAGAAAGGAATGTTATCG
GTTCTGGAGATCAGGAAAAGGTTGGAGCTATTTGGAAGGATTCATGCACA
GAGGGTTCCTTTCTGGTTCAAGCGAAAAGCAGTCCAAATAATTTGAATGA
GTTCGAAGCCCACTGGCATGCTAACCTCAGTTGTTTGGATGTATATGAGC
CGGATCTTTTTCTTGACCCACGCAGAACTGTGCTGAAGTGTGGATCAAAG
CCCGGAACTTTTCGCTACAGGGGGATTGGGGTAAGAGTGGAGAATTGTGT
TGACCTGAGTCGAATATACGATGTTTACTACAAGTCTACGTTAAGGTGCA
CTGAAAAACGAAGAGCAGAATTTGAACATGTCTCGACAACTGTATCGCAG
TTCTTGAGGTGGGTTGTCTCTACCTCGGCTTCCTCGAGGGAAGATCTTTG
GAAGGACGAAGCCCTATTCAAGAGTGTTGCGAACCGAGCACTAGTTGAGT
CTTTTGTGGAACTCTTCATCACGCGAAGCTCTCCAGGCACCGTGAGGGCA
AAAGCTCTTGCTTTGAAACGGGTTTGCGATATCGGCTTTGTAATTGTTGG
AAACGAGATTACTAGATGCCGTTTGAAGCTTGTCTCCGTTGTTCTTCAAA
ATATCGCCCGTGCCGCAAGGCGCTCTTATCGTGCCGCATGTCAAAGCAGG
AAAAGCATGGACAAGCGATCTATTTCGATGAAGTTATTGTCAACTGCTCA
ATCAAACGTGAACCATTTGAGGCGGAAAGCCGTGTCAGCTCTCGATTTCC
TTATGCGTTCCATTTCTCATGAAACAAATCACGGTTTTGCTTCACGATCA
ATCGTTATTGCTTCCTTAGAGAATTGGTATAGGAACTTCATCGGTTTACT
CATGCTTTCTTCTGGGGGACAACGGCCTCAAGTTTTCAGTCAGCTCCAGG
TCCCAACTAAAGAGGAGTTCAGGAGTCTCAACCGCCTATCAGAGCATTTA
TCATTTATCGAACTAAGGACGCTGGATGAGAAGCGACCCCGCCATGTCGA
TCTACCGTATTTGGTTCTACCAGTGTTAATATTGCCGTATCTGAGGTTCC
ACTCGGATGTTATTCGTCCAACGATTCAACACACAGTTGGAAATCGTGAT
GCTGGGCCTTTTAGACCACTTCTGCTGCACACTACCACCGCGCTCGGCCT
TAAGCCTCAGCAAATAACCACTGTGCTGAGAAGCTTCATGTCTTTTCAAG
ATTGCAGGCTTCGTCTTGTTACTTCCATGGATTTGAGAAGACATTACGCG
ACCATGATGCTACGGTCCTATCGTCAACGAGAAGTATTCCCGGGTCTCGA
TGAAGAACAGTTTCTGAAAAAGTTAGCTCAGCAGATGAACACGTCTCCTG
AACAGCTTAAGCGAACCTACATAGCGCACGTAGATTTGCGGATAACAGAT
GAAACGGCTGCGTTGGCAAAGTTTTGGGGGAGGTTTCTGACCACTTAG