Gcaud233.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud233.t1
Unique Name	Gcaud233.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	348

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2399_length_5807_cov_4.808083	contig	NODE_2399_length_5807_cov_4.808083:536..1579 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud233	Gcaud233	Gracilaria caudata M_176_S67 male	gene	NODE_2399_length_5807_cov_4.808083 536..1579 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud233.t1.stop1	Gcaud233.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2399_length_5807_cov_4.808083 536..538 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud233.t1.CDS1	Gcaud233.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2399_length_5807_cov_4.808083 536..1579 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud233.t1.exon1	Gcaud233.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2399_length_5807_cov_4.808083 536..1579 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud233.t1.start1	Gcaud233.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2399_length_5807_cov_4.808083 1577..1579 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud233.t1	Gcaud233.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2399_length_5807_cov_4.808083 536..1579 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2399_length_5807_cov_4.808083:536..1579-
coding sequence from alignment at NODE_2399_length_5807_cov_4.808083:536..1579-

mRNA sequence

>Gcaud233.t1 ID=Gcaud233.t1|Name=Gcaud233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp
MAYRFPYMRSRTNDAHFHEILSSNSDEEYPFPPMCLSDDEHHTSVPGRVP
PGELESSANEGLAVSGIGIVYDDDVSASAAKCLSRGRKRRYNEHDEGTTR
PRKVSKKTPSNPTQASSTSVRRRSVEAARVEIIDLTLESNADDITDGNGV
NRSAILDDTNADSSGTYPTQTAWRIWINSLMKKNPRFFDSPEALLMSRRK
TRQGISAYKGIGATTKNCEGLRSVIEYFLDTECQGSSEALKQKKLSNLGT
TVSQFLRWCVASSSCHAYDAWRRDCLFHNICNLMLVEQFVAYFQVRCENR
TAKQKADDLLVVCEAAYPTLGRRKSEVDRVSIVLESIANARRGRSKH*

spliced messenger RNA

>Gcaud233.t1 ID=Gcaud233.t1|Name=Gcaud233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at NODE_2399_length_5807_cov_4.808083:536..1579- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTATCGCTTTCCGTACATGCGTAGTCGCACGAACGACGCGCACTT
TCATGAAATTCTGTCCTCAAATTCCGACGAAGAGTATCCTTTCCCCCCCA
TGTGTCTTTCAGATGACGAGCATCATACCTCTGTACCAGGACGCGTACCG
CCCGGGGAACTGGAATCATCCGCAAATGAAGGGCTTGCCGTCTCTGGCAT
CGGAATTGTGTACGACGATGATGTTTCTGCATCTGCCGCGAAGTGCCTGT
CTCGGGGCAGGAAAAGGAGGTACAATGAACATGATGAAGGAACTACGAGG
CCTAGGAAAGTCTCGAAGAAGACCCCGTCGAATCCAACACAGGCAAGCTC
TACATCAGTGAGACGCAGGTCGGTGGAAGCCGCAAGGGTGGAAATCATAG
ATCTCACCTTGGAAAGTAATGCAGATGACATAACCGATGGTAACGGTGTC
AACCGATCGGCCATTCTCGATGACACAAATGCGGACTCTTCTGGGACGTA
TCCAACTCAGACGGCTTGGAGGATCTGGATCAATTCACTGATGAAGAAGA
ACCCAAGGTTCTTTGATAGTCCTGAAGCCCTTCTTATGAGTCGTCGGAAG
ACAAGGCAAGGCATATCAGCCTATAAAGGTATTGGGGCTACGACGAAGAA
CTGTGAAGGCCTGCGCAGCGTGATAGAATATTTTCTTGATACAGAATGCC
AAGGTTCTAGTGAGGCACTGAAGCAAAAGAAGTTGTCGAACTTGGGCACA
ACCGTTTCTCAATTTCTTCGCTGGTGTGTTGCCAGCTCCTCATGCCATGC
GTACGACGCATGGAGAAGAGATTGCCTCTTTCACAACATCTGCAATCTGA
TGCTGGTGGAACAGTTCGTAGCGTATTTTCAAGTGCGCTGTGAAAATAGG
ACTGCCAAACAGAAGGCAGACGACTTGCTTGTGGTTTGCGAAGCCGCTTA
CCCGACTCTTGGAAGGAGAAAGTCAGAAGTCGATCGCGTATCTATAGTTC
TCGAGAGTATTGCAAACGCGAGAAGGGGACGCTCAAAGCATTAG

protein sequence of Gcaud233.t1

>Gcaud233.t1 ID=Gcaud233.t1|Name=Gcaud233.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=348bp
MAYRFPYMRSRTNDAHFHEILSSNSDEEYPFPPMCLSDDEHHTSVPGRVP
PGELESSANEGLAVSGIGIVYDDDVSASAAKCLSRGRKRRYNEHDEGTTR
PRKVSKKTPSNPTQASSTSVRRRSVEAARVEIIDLTLESNADDITDGNGV
NRSAILDDTNADSSGTYPTQTAWRIWINSLMKKNPRFFDSPEALLMSRRK
TRQGISAYKGIGATTKNCEGLRSVIEYFLDTECQGSSEALKQKKLSNLGT
TVSQFLRWCVASSSCHAYDAWRRDCLFHNICNLMLVEQFVAYFQVRCENR
TAKQKADDLLVVCEAAYPTLGRRKSEVDRVSIVLESIANARRGRSKH*

mRNA from alignment at NODE_2399_length_5807_cov_4.808083:536..1579-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud233.t1 ID=Gcaud233.t1|Name=Gcaud233.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1044bp|location=Sequence derived from alignment at NODE_2399_length_5807_cov_4.808083:536..1579- (Gracilaria caudata M_176_S67 male)
ATGGCCTATCGCTTTCCGTACATGCGTAGTCGCACGAACGACGCGCACTT
TCATGAAATTCTGTCCTCAAATTCCGACGAAGAGTATCCTTTCCCCCCCA
TGTGTCTTTCAGATGACGAGCATCATACCTCTGTACCAGGACGCGTACCG
CCCGGGGAACTGGAATCATCCGCAAATGAAGGGCTTGCCGTCTCTGGCAT
CGGAATTGTGTACGACGATGATGTTTCTGCATCTGCCGCGAAGTGCCTGT
CTCGGGGCAGGAAAAGGAGGTACAATGAACATGATGAAGGAACTACGAGG
CCTAGGAAAGTCTCGAAGAAGACCCCGTCGAATCCAACACAGGCAAGCTC
TACATCAGTGAGACGCAGGTCGGTGGAAGCCGCAAGGGTGGAAATCATAG
ATCTCACCTTGGAAAGTAATGCAGATGACATAACCGATGGTAACGGTGTC
AACCGATCGGCCATTCTCGATGACACAAATGCGGACTCTTCTGGGACGTA
TCCAACTCAGACGGCTTGGAGGATCTGGATCAATTCACTGATGAAGAAGA
ACCCAAGGTTCTTTGATAGTCCTGAAGCCCTTCTTATGAGTCGTCGGAAG
ACAAGGCAAGGCATATCAGCCTATAAAGGTATTGGGGCTACGACGAAGAA
CTGTGAAGGCCTGCGCAGCGTGATAGAATATTTTCTTGATACAGAATGCC
AAGGTTCTAGTGAGGCACTGAAGCAAAAGAAGTTGTCGAACTTGGGCACA
ACCGTTTCTCAATTTCTTCGCTGGTGTGTTGCCAGCTCCTCATGCCATGC
GTACGACGCATGGAGAAGAGATTGCCTCTTTCACAACATCTGCAATCTGA
TGCTGGTGGAACAGTTCGTAGCGTATTTTCAAGTGCGCTGTGAAAATAGG
ACTGCCAAACAGAAGGCAGACGACTTGCTTGTGGTTTGCGAAGCCGCTTA
CCCGACTCTTGGAAGGAGAAAGTCAGAAGTCGATCGCGTATCTATAGTTC
TCGAGAGTATTGCAAACGCGAGAAGGGGACGCTCAAAGCATTAG

Coding sequence (CDS) from alignment at NODE_2399_length_5807_cov_4.808083:536..1579-

>Gcaud233.t1 ID=Gcaud233.t1|Name=Gcaud233.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1044bp|location=Sequence derived from alignment at NODE_2399_length_5807_cov_4.808083:536..1579- (Gracilaria caudata M_176_S67 male)
ATGGCCTATCGCTTTCCGTACATGCGTAGTCGCACGAACGACGCGCACTT
TCATGAAATTCTGTCCTCAAATTCCGACGAAGAGTATCCTTTCCCCCCCA
TGTGTCTTTCAGATGACGAGCATCATACCTCTGTACCAGGACGCGTACCG
CCCGGGGAACTGGAATCATCCGCAAATGAAGGGCTTGCCGTCTCTGGCAT
CGGAATTGTGTACGACGATGATGTTTCTGCATCTGCCGCGAAGTGCCTGT
CTCGGGGCAGGAAAAGGAGGTACAATGAACATGATGAAGGAACTACGAGG
CCTAGGAAAGTCTCGAAGAAGACCCCGTCGAATCCAACACAGGCAAGCTC
TACATCAGTGAGACGCAGGTCGGTGGAAGCCGCAAGGGTGGAAATCATAG
ATCTCACCTTGGAAAGTAATGCAGATGACATAACCGATGGTAACGGTGTC
AACCGATCGGCCATTCTCGATGACACAAATGCGGACTCTTCTGGGACGTA
TCCAACTCAGACGGCTTGGAGGATCTGGATCAATTCACTGATGAAGAAGA
ACCCAAGGTTCTTTGATAGTCCTGAAGCCCTTCTTATGAGTCGTCGGAAG
ACAAGGCAAGGCATATCAGCCTATAAAGGTATTGGGGCTACGACGAAGAA
CTGTGAAGGCCTGCGCAGCGTGATAGAATATTTTCTTGATACAGAATGCC
AAGGTTCTAGTGAGGCACTGAAGCAAAAGAAGTTGTCGAACTTGGGCACA
ACCGTTTCTCAATTTCTTCGCTGGTGTGTTGCCAGCTCCTCATGCCATGC
GTACGACGCATGGAGAAGAGATTGCCTCTTTCACAACATCTGCAATCTGA
TGCTGGTGGAACAGTTCGTAGCGTATTTTCAAGTGCGCTGTGAAAATAGG
ACTGCCAAACAGAAGGCAGACGACTTGCTTGTGGTTTGCGAAGCCGCTTA
CCCGACTCTTGGAAGGAGAAAGTCAGAAGTCGATCGCGTATCTATAGTTC
TCGAGAGTATTGCAAACGCGAGAAGGGGACGCTCAAAGCATTAG