Gcaud1881.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1881.t1
Unique Name	Gcaud1881.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	421

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_238_length_34707_cov_4.869829	contig	NODE_238_length_34707_cov_4.869829:17205..18467 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	109760.SPPG_01871T0
Preferred name	HAT1
PFAMs	Acetyltransf_1,Hat1_N
Max annot lvl	4751\|Fungi
KEGG ko	ko:K11303
KEGG Pathway	ko05034,map05034
GOs	GO:0000123,GO:0000228,GO:0000302,GO:0000785,GO:0000790,GO:0001558,GO:0003674,GO:0003682,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0008080,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010485,GO:0010556,GO:0010558,GO:0010570,GO:0010605,GO:0010629,GO:0016043,GO:0016407,GO:0016410,GO:0016458,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030308,GO:0031248,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034212,GO:0034599,GO:0034614,GO:0034641,GO:0036166,GO:0036211,GO:0040008,GO:0040029,GO:0042221,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043981,GO:0043982,GO:0043983,GO:0043995,GO:0043996,GO:0043997,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0060258,GO:0061733,GO:0065007,GO:0070013,GO:0070784,GO:0070785,GO:0070887,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:1900428,GO:1900429,GO:1901360,GO:1901564,GO:1901700,GO:1901701,GO:1902493,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2000220,GO:2000221,GO:2001141
Evalue	3.5e-41
EggNOG OGs	KOG2696@1\|root,KOG2696@2759\|Eukaryota,38YSJ@33154\|Opisthokonta,3NWPI@4751\|Fungi
EC	2.3.1.48
Description	Catalytic component of the histone acetylase B (HAT-B) complex. Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. Involved in DNA double-strand break repair
COG category	B
BRITE	ko00000,ko00001,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1881	Gcaud1881	Gracilaria caudata M_176_S67 male	gene	NODE_238_length_34707_cov_4.869829 17205..18467 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1881.t1.start1	Gcaud1881.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_238_length_34707_cov_4.869829 17205..17207 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1881.t1.CDS1	Gcaud1881.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 17205..18467 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1881.t1.exon1	Gcaud1881.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 17205..18467 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1881.t1.stop1	Gcaud1881.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_238_length_34707_cov_4.869829 18465..18467 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1881.t1	Gcaud1881.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_238_length_34707_cov_4.869829 17205..18467 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_238_length_34707_cov_4.869829:17205..18467+
coding sequence from alignment at NODE_238_length_34707_cov_4.869829:17205..18467+

mRNA sequence

>Gcaud1881.t1 ID=Gcaud1881.t1|Name=Gcaud1881.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=421bp
MAGASPQQPARKRVRFDPAAATSDARGPGLSARDCVQLRFVRADSSIPSS
PLDSHDRQLTFVPSFLHQIVPHESVHGWDSLRVAVYVHGPTLATWIDSVG
ERSEADPGAEATDVPALIAPFIKDGLCSTRAAFEAIMNAEPSQLPFGNQI
ASYNADGVRFGVYKEKFLIRDESGVVSPNSDLLSFHHRMAFLMLIHIDDA
SFIDVDDERWELFAIARLDNDKPVEFVAYSTVYPFSALTCGDGPMRFAER
IRVSQVFVLPMFQRSGHGAKLLNAIYEDAQRRNALQVTVEDPSPGFRLLR
DVTDLRRAYDAGILDADLPLDLAEEENLMDTLGAKLLLTPGQARRCIEVH
QLRHTDRSDEEAYKKYRLWVKRRLFKANLETLDQYDKEERKEKLAEIYAD
VEMEYDTAILRIRYRSTNKR*

spliced messenger RNA

>Gcaud1881.t1 ID=Gcaud1881.t1|Name=Gcaud1881.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:17205..18467+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGGCGCTTCTCCACAACAGCCCGCGCGGAAGCGCGTCCGCTTCGA
CCCCGCGGCCGCTACGTCCGATGCCCGTGGACCGGGCTTATCCGCACGCG
ACTGCGTGCAGCTGCGCTTCGTTCGTGCAGACTCTTCGATACCGTCATCG
CCACTCGATTCGCACGATAGACAACTCACATTTGTGCCGTCCTTCCTACA
TCAGATCGTCCCACATGAGAGCGTCCACGGATGGGATAGTCTTCGTGTCG
CGGTGTACGTTCATGGGCCGACGCTTGCGACATGGATCGATAGTGTTGGA
GAAAGATCGGAGGCGGACCCTGGCGCTGAAGCCACCGATGTTCCTGCGCT
TATCGCCCCATTCATCAAGGACGGCTTATGTTCAACGCGAGCGGCATTCG
AAGCCATCATGAACGCGGAACCATCACAGCTTCCTTTCGGCAATCAGATA
GCTTCGTACAACGCGGATGGGGTGCGGTTCGGTGTATACAAGGAAAAGTT
TTTGATTCGCGATGAATCTGGCGTGGTTTCCCCAAACTCGGATCTTCTGT
CCTTTCATCATCGTATGGCTTTCCTCATGTTAATCCACATTGATGACGCT
TCCTTCATTGACGTTGACGATGAACGCTGGGAACTGTTTGCAATTGCCCG
CTTAGACAATGACAAACCGGTTGAGTTCGTAGCGTACTCAACCGTGTACC
CATTCTCTGCCTTGACCTGCGGAGATGGACCTATGCGGTTTGCAGAGCGA
ATTCGCGTCAGTCAGGTGTTCGTGCTGCCTATGTTTCAGCGCAGTGGACA
TGGGGCTAAACTGCTCAACGCCATCTACGAAGACGCTCAACGTAGAAACG
CCTTGCAAGTCACTGTTGAGGATCCTAGCCCTGGTTTCCGCCTTTTGCGA
GATGTCACAGACTTGCGACGTGCGTATGATGCGGGTATACTAGACGCAGA
TCTACCATTAGATTTGGCTGAGGAAGAAAATCTGATGGATACCTTGGGGG
CAAAGCTGCTTTTGACTCCTGGCCAGGCTCGGCGCTGCATTGAGGTCCAT
CAGTTGCGACATACCGATCGTTCTGATGAGGAAGCGTACAAGAAGTATCG
CCTCTGGGTTAAACGTCGATTGTTTAAGGCAAATCTTGAGACGCTCGATC
AATATGACAAGGAAGAGCGCAAGGAGAAATTGGCTGAGATTTACGCTGAT
GTAGAGATGGAATACGACACAGCAATACTTCGCATAAGATATCGTTCCAC
CAACAAGCGGTGA

protein sequence of Gcaud1881.t1

>Gcaud1881.t1 ID=Gcaud1881.t1|Name=Gcaud1881.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=421bp
MAGASPQQPARKRVRFDPAAATSDARGPGLSARDCVQLRFVRADSSIPSS
PLDSHDRQLTFVPSFLHQIVPHESVHGWDSLRVAVYVHGPTLATWIDSVG
ERSEADPGAEATDVPALIAPFIKDGLCSTRAAFEAIMNAEPSQLPFGNQI
ASYNADGVRFGVYKEKFLIRDESGVVSPNSDLLSFHHRMAFLMLIHIDDA
SFIDVDDERWELFAIARLDNDKPVEFVAYSTVYPFSALTCGDGPMRFAER
IRVSQVFVLPMFQRSGHGAKLLNAIYEDAQRRNALQVTVEDPSPGFRLLR
DVTDLRRAYDAGILDADLPLDLAEEENLMDTLGAKLLLTPGQARRCIEVH
QLRHTDRSDEEAYKKYRLWVKRRLFKANLETLDQYDKEERKEKLAEIYAD
VEMEYDTAILRIRYRSTNKR*

mRNA from alignment at NODE_238_length_34707_cov_4.869829:17205..18467+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1881.t1 ID=Gcaud1881.t1|Name=Gcaud1881.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1263bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:17205..18467+ (Gracilaria caudata M_176_S67 male)
ATGGCCGGCGCTTCTCCACAACAGCCCGCGCGGAAGCGCGTCCGCTTCGA
CCCCGCGGCCGCTACGTCCGATGCCCGTGGACCGGGCTTATCCGCACGCG
ACTGCGTGCAGCTGCGCTTCGTTCGTGCAGACTCTTCGATACCGTCATCG
CCACTCGATTCGCACGATAGACAACTCACATTTGTGCCGTCCTTCCTACA
TCAGATCGTCCCACATGAGAGCGTCCACGGATGGGATAGTCTTCGTGTCG
CGGTGTACGTTCATGGGCCGACGCTTGCGACATGGATCGATAGTGTTGGA
GAAAGATCGGAGGCGGACCCTGGCGCTGAAGCCACCGATGTTCCTGCGCT
TATCGCCCCATTCATCAAGGACGGCTTATGTTCAACGCGAGCGGCATTCG
AAGCCATCATGAACGCGGAACCATCACAGCTTCCTTTCGGCAATCAGATA
GCTTCGTACAACGCGGATGGGGTGCGGTTCGGTGTATACAAGGAAAAGTT
TTTGATTCGCGATGAATCTGGCGTGGTTTCCCCAAACTCGGATCTTCTGT
CCTTTCATCATCGTATGGCTTTCCTCATGTTAATCCACATTGATGACGCT
TCCTTCATTGACGTTGACGATGAACGCTGGGAACTGTTTGCAATTGCCCG
CTTAGACAATGACAAACCGGTTGAGTTCGTAGCGTACTCAACCGTGTACC
CATTCTCTGCCTTGACCTGCGGAGATGGACCTATGCGGTTTGCAGAGCGA
ATTCGCGTCAGTCAGGTGTTCGTGCTGCCTATGTTTCAGCGCAGTGGACA
TGGGGCTAAACTGCTCAACGCCATCTACGAAGACGCTCAACGTAGAAACG
CCTTGCAAGTCACTGTTGAGGATCCTAGCCCTGGTTTCCGCCTTTTGCGA
GATGTCACAGACTTGCGACGTGCGTATGATGCGGGTATACTAGACGCAGA
TCTACCATTAGATTTGGCTGAGGAAGAAAATCTGATGGATACCTTGGGGG
CAAAGCTGCTTTTGACTCCTGGCCAGGCTCGGCGCTGCATTGAGGTCCAT
CAGTTGCGACATACCGATCGTTCTGATGAGGAAGCGTACAAGAAGTATCG
CCTCTGGGTTAAACGTCGATTGTTTAAGGCAAATCTTGAGACGCTCGATC
AATATGACAAGGAAGAGCGCAAGGAGAAATTGGCTGAGATTTACGCTGAT
GTAGAGATGGAATACGACACAGCAATACTTCGCATAAGATATCGTTCCAC
CAACAAGCGGTGA

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:17205..18467+

>Gcaud1881.t1 ID=Gcaud1881.t1|Name=Gcaud1881.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1263bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:17205..18467+ (Gracilaria caudata M_176_S67 male)
ATGGCCGGCGCTTCTCCACAACAGCCCGCGCGGAAGCGCGTCCGCTTCGA
CCCCGCGGCCGCTACGTCCGATGCCCGTGGACCGGGCTTATCCGCACGCG
ACTGCGTGCAGCTGCGCTTCGTTCGTGCAGACTCTTCGATACCGTCATCG
CCACTCGATTCGCACGATAGACAACTCACATTTGTGCCGTCCTTCCTACA
TCAGATCGTCCCACATGAGAGCGTCCACGGATGGGATAGTCTTCGTGTCG
CGGTGTACGTTCATGGGCCGACGCTTGCGACATGGATCGATAGTGTTGGA
GAAAGATCGGAGGCGGACCCTGGCGCTGAAGCCACCGATGTTCCTGCGCT
TATCGCCCCATTCATCAAGGACGGCTTATGTTCAACGCGAGCGGCATTCG
AAGCCATCATGAACGCGGAACCATCACAGCTTCCTTTCGGCAATCAGATA
GCTTCGTACAACGCGGATGGGGTGCGGTTCGGTGTATACAAGGAAAAGTT
TTTGATTCGCGATGAATCTGGCGTGGTTTCCCCAAACTCGGATCTTCTGT
CCTTTCATCATCGTATGGCTTTCCTCATGTTAATCCACATTGATGACGCT
TCCTTCATTGACGTTGACGATGAACGCTGGGAACTGTTTGCAATTGCCCG
CTTAGACAATGACAAACCGGTTGAGTTCGTAGCGTACTCAACCGTGTACC
CATTCTCTGCCTTGACCTGCGGAGATGGACCTATGCGGTTTGCAGAGCGA
ATTCGCGTCAGTCAGGTGTTCGTGCTGCCTATGTTTCAGCGCAGTGGACA
TGGGGCTAAACTGCTCAACGCCATCTACGAAGACGCTCAACGTAGAAACG
CCTTGCAAGTCACTGTTGAGGATCCTAGCCCTGGTTTCCGCCTTTTGCGA
GATGTCACAGACTTGCGACGTGCGTATGATGCGGGTATACTAGACGCAGA
TCTACCATTAGATTTGGCTGAGGAAGAAAATCTGATGGATACCTTGGGGG
CAAAGCTGCTTTTGACTCCTGGCCAGGCTCGGCGCTGCATTGAGGTCCAT
CAGTTGCGACATACCGATCGTTCTGATGAGGAAGCGTACAAGAAGTATCG
CCTCTGGGTTAAACGTCGATTGTTTAAGGCAAATCTTGAGACGCTCGATC
AATATGACAAGGAAGAGCGCAAGGAGAAATTGGCTGAGATTTACGCTGAT
GTAGAGATGGAATACGACACAGCAATACTTCGCATAAGATATCGTTCCAC
CAACAAGCGGTGA