Gcaud1883.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1883.t1
Unique Name	Gcaud1883.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	499

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_238_length_34707_cov_4.869829	contig	NODE_238_length_34707_cov_4.869829:22532..24028 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707757.1
Preferred name	GLE1
PFAMs	GLE1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18723
KEGG TC	1.I.1
GOs	GO:0000003,GO:0000822,GO:0003006,GO:0003341,GO:0003351,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006449,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007422,GO:0008047,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008283,GO:0008289,GO:0009791,GO:0009799,GO:0009855,GO:0009889,GO:0009987,GO:0010001,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0014009,GO:0014010,GO:0014037,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016973,GO:0019222,GO:0022008,GO:0022414,GO:0030154,GO:0030182,GO:0030234,GO:0031090,GO:0031224,GO:0031323,GO:0031326,GO:0031369,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034248,GO:0034399,GO:0034613,GO:0036094,GO:0042063,GO:0042802,GO:0042886,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0045184,GO:0046907,GO:0048316,GO:0048468,GO:0048608,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051641,GO:0051649,GO:0060255,GO:0060287,GO:0061458,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098772,GO:2000112
Evalue	6.21e-51
EggNOG OGs	KOG2412@1\|root,KOG2412@2759\|Eukaryota
Description	inositol hexakisphosphate binding
COG category	Z
BRITE	ko00000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1883	Gcaud1883	Gracilaria caudata M_176_S67 male	gene	NODE_238_length_34707_cov_4.869829 22532..24028 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1883.t1.start1	Gcaud1883.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_238_length_34707_cov_4.869829 22532..22534 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1883.t1.CDS1	Gcaud1883.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 22532..24028 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1883.t1.exon1	Gcaud1883.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 22532..24028 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1883.t1.stop1	Gcaud1883.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_238_length_34707_cov_4.869829 24026..24028 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1883.t1	Gcaud1883.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_238_length_34707_cov_4.869829 22532..24028 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_238_length_34707_cov_4.869829:22532..24028+
coding sequence from alignment at NODE_238_length_34707_cov_4.869829:22532..24028+

mRNA sequence

>Gcaud1883.t1 ID=Gcaud1883.t1|Name=Gcaud1883.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=499bp
MSSRSAKLISKWNSYHTAARNDHQRLTASYDIALPSFVSTNPSRSSCLNI
NRDEGKRESLRVLRKSKIDLIAKREEAVRQARERELRIRRQNELALQQAQ
AELRAAAAKNAAAIAEAKERETRARNEASIKERKPSTFAEARSKPSTTET
AEQKSDPSKAEKPNLSIENAPQIAGKAKQTGKSHAQESKSTDTDSLLQQA
EDGLRVWEEVSEEAEQFRSNPALKRGRLTLKKRINLAVNQIAASVKQVWR
KVVDLTKIVAEMKANYNTIGESFVMKMIAERLISESDGSAALSKTTAFAV
AAVIVSLTASVENVNKFRLVFLGAFYDHCIYTIPRYERKRQGESVDHYKS
RIGYKEGEDSESYLERMCGCVNLFAAVVQTEDVYTAQRVSGARNPFPLSW
GWCILARLCNKEQRSITPSIVYAYLEISGYRLSKEYGLQFKKLMYSISEA
VVKRAIKSAPKGPTTRLQIFVEDFQRAGFIVQTPPEGRKLPRSDAENT*

spliced messenger RNA

>Gcaud1883.t1 ID=Gcaud1883.t1|Name=Gcaud1883.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:22532..24028+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAGTCGGTCCGCGAAGTTGATATCCAAATGGAATTCTTATCACAC
AGCAGCAAGGAATGACCATCAGCGATTAACTGCTTCTTATGATATCGCTC
TACCTTCATTCGTTTCTACAAATCCATCGCGTTCCTCATGCTTGAATATC
AATCGCGATGAAGGAAAAAGAGAATCGCTTCGAGTCTTGAGGAAGTCCAA
AATAGATCTAATAGCAAAACGAGAGGAAGCAGTACGACAGGCGCGTGAAA
GAGAGCTGAGAATTAGAAGACAAAACGAGCTTGCACTTCAACAGGCGCAA
GCCGAGTTGAGAGCTGCCGCTGCGAAGAATGCAGCTGCAATTGCGGAAGC
AAAAGAGAGGGAGACGCGCGCAAGGAATGAGGCTAGTATCAAGGAAAGGA
AACCTAGCACATTCGCAGAAGCTAGATCAAAACCCTCGACAACCGAAACA
GCTGAGCAGAAGTCTGATCCATCAAAAGCAGAGAAGCCAAATTTAAGCAT
TGAGAACGCCCCACAAATTGCTGGCAAGGCGAAGCAGACTGGAAAGTCGC
ACGCGCAAGAATCGAAAAGCACAGATACAGATAGCCTTTTACAGCAAGCT
GAAGATGGGCTTCGAGTATGGGAAGAAGTCTCTGAGGAGGCGGAGCAATT
CAGAAGCAATCCCGCTTTGAAAAGGGGTCGGCTTACTTTGAAGAAGAGAA
TTAATCTAGCCGTTAATCAGATCGCTGCGAGCGTGAAGCAGGTATGGCGG
AAAGTGGTTGATCTCACTAAGATCGTGGCTGAGATGAAGGCGAACTATAA
TACTATAGGCGAATCTTTCGTGATGAAGATGATCGCTGAACGTCTAATAA
GTGAATCTGATGGAAGTGCCGCTCTGAGTAAAACAACTGCGTTTGCAGTT
GCTGCAGTGATCGTTAGTTTGACTGCTAGCGTCGAAAATGTGAATAAGTT
CAGACTCGTATTCCTGGGGGCGTTCTATGATCACTGTATATACACTATTC
CAAGATATGAAAGAAAGCGCCAAGGAGAATCTGTCGATCATTACAAATCT
CGAATTGGCTACAAAGAAGGTGAAGACTCGGAAAGCTATCTTGAGCGAAT
GTGTGGCTGTGTCAATCTATTTGCCGCGGTTGTACAGACCGAAGACGTTT
ACACCGCTCAAAGAGTATCCGGAGCCCGGAATCCGTTTCCGCTATCGTGG
GGTTGGTGTATATTGGCTCGGCTGTGCAACAAGGAGCAAAGAAGTATTAC
ACCTTCCATTGTGTACGCTTACTTGGAGATCTCTGGTTATCGTCTTTCGA
AAGAGTATGGCCTACAGTTTAAGAAGCTCATGTACAGCATTAGCGAGGCC
GTGGTCAAGCGGGCAATCAAGTCTGCGCCGAAAGGACCGACTACAAGGCT
TCAGATCTTCGTAGAAGACTTCCAGCGAGCTGGATTCATTGTTCAGACAC
CCCCAGAAGGTCGAAAACTACCTAGATCGGATGCAGAAAACACATGA

protein sequence of Gcaud1883.t1

>Gcaud1883.t1 ID=Gcaud1883.t1|Name=Gcaud1883.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=499bp
MSSRSAKLISKWNSYHTAARNDHQRLTASYDIALPSFVSTNPSRSSCLNI
NRDEGKRESLRVLRKSKIDLIAKREEAVRQARERELRIRRQNELALQQAQ
AELRAAAAKNAAAIAEAKERETRARNEASIKERKPSTFAEARSKPSTTET
AEQKSDPSKAEKPNLSIENAPQIAGKAKQTGKSHAQESKSTDTDSLLQQA
EDGLRVWEEVSEEAEQFRSNPALKRGRLTLKKRINLAVNQIAASVKQVWR
KVVDLTKIVAEMKANYNTIGESFVMKMIAERLISESDGSAALSKTTAFAV
AAVIVSLTASVENVNKFRLVFLGAFYDHCIYTIPRYERKRQGESVDHYKS
RIGYKEGEDSESYLERMCGCVNLFAAVVQTEDVYTAQRVSGARNPFPLSW
GWCILARLCNKEQRSITPSIVYAYLEISGYRLSKEYGLQFKKLMYSISEA
VVKRAIKSAPKGPTTRLQIFVEDFQRAGFIVQTPPEGRKLPRSDAENT*

mRNA from alignment at NODE_238_length_34707_cov_4.869829:22532..24028+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1883.t1 ID=Gcaud1883.t1|Name=Gcaud1883.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:22532..24028+ (Gracilaria caudata M_176_S67 male)
ATGTCGAGTCGGTCCGCGAAGTTGATATCCAAATGGAATTCTTATCACAC
AGCAGCAAGGAATGACCATCAGCGATTAACTGCTTCTTATGATATCGCTC
TACCTTCATTCGTTTCTACAAATCCATCGCGTTCCTCATGCTTGAATATC
AATCGCGATGAAGGAAAAAGAGAATCGCTTCGAGTCTTGAGGAAGTCCAA
AATAGATCTAATAGCAAAACGAGAGGAAGCAGTACGACAGGCGCGTGAAA
GAGAGCTGAGAATTAGAAGACAAAACGAGCTTGCACTTCAACAGGCGCAA
GCCGAGTTGAGAGCTGCCGCTGCGAAGAATGCAGCTGCAATTGCGGAAGC
AAAAGAGAGGGAGACGCGCGCAAGGAATGAGGCTAGTATCAAGGAAAGGA
AACCTAGCACATTCGCAGAAGCTAGATCAAAACCCTCGACAACCGAAACA
GCTGAGCAGAAGTCTGATCCATCAAAAGCAGAGAAGCCAAATTTAAGCAT
TGAGAACGCCCCACAAATTGCTGGCAAGGCGAAGCAGACTGGAAAGTCGC
ACGCGCAAGAATCGAAAAGCACAGATACAGATAGCCTTTTACAGCAAGCT
GAAGATGGGCTTCGAGTATGGGAAGAAGTCTCTGAGGAGGCGGAGCAATT
CAGAAGCAATCCCGCTTTGAAAAGGGGTCGGCTTACTTTGAAGAAGAGAA
TTAATCTAGCCGTTAATCAGATCGCTGCGAGCGTGAAGCAGGTATGGCGG
AAAGTGGTTGATCTCACTAAGATCGTGGCTGAGATGAAGGCGAACTATAA
TACTATAGGCGAATCTTTCGTGATGAAGATGATCGCTGAACGTCTAATAA
GTGAATCTGATGGAAGTGCCGCTCTGAGTAAAACAACTGCGTTTGCAGTT
GCTGCAGTGATCGTTAGTTTGACTGCTAGCGTCGAAAATGTGAATAAGTT
CAGACTCGTATTCCTGGGGGCGTTCTATGATCACTGTATATACACTATTC
CAAGATATGAAAGAAAGCGCCAAGGAGAATCTGTCGATCATTACAAATCT
CGAATTGGCTACAAAGAAGGTGAAGACTCGGAAAGCTATCTTGAGCGAAT
GTGTGGCTGTGTCAATCTATTTGCCGCGGTTGTACAGACCGAAGACGTTT
ACACCGCTCAAAGAGTATCCGGAGCCCGGAATCCGTTTCCGCTATCGTGG
GGTTGGTGTATATTGGCTCGGCTGTGCAACAAGGAGCAAAGAAGTATTAC
ACCTTCCATTGTGTACGCTTACTTGGAGATCTCTGGTTATCGTCTTTCGA
AAGAGTATGGCCTACAGTTTAAGAAGCTCATGTACAGCATTAGCGAGGCC
GTGGTCAAGCGGGCAATCAAGTCTGCGCCGAAAGGACCGACTACAAGGCT
TCAGATCTTCGTAGAAGACTTCCAGCGAGCTGGATTCATTGTTCAGACAC
CCCCAGAAGGTCGAAAACTACCTAGATCGGATGCAGAAAACACATGA

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:22532..24028+

>Gcaud1883.t1 ID=Gcaud1883.t1|Name=Gcaud1883.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1497bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:22532..24028+ (Gracilaria caudata M_176_S67 male)
ATGTCGAGTCGGTCCGCGAAGTTGATATCCAAATGGAATTCTTATCACAC
AGCAGCAAGGAATGACCATCAGCGATTAACTGCTTCTTATGATATCGCTC
TACCTTCATTCGTTTCTACAAATCCATCGCGTTCCTCATGCTTGAATATC
AATCGCGATGAAGGAAAAAGAGAATCGCTTCGAGTCTTGAGGAAGTCCAA
AATAGATCTAATAGCAAAACGAGAGGAAGCAGTACGACAGGCGCGTGAAA
GAGAGCTGAGAATTAGAAGACAAAACGAGCTTGCACTTCAACAGGCGCAA
GCCGAGTTGAGAGCTGCCGCTGCGAAGAATGCAGCTGCAATTGCGGAAGC
AAAAGAGAGGGAGACGCGCGCAAGGAATGAGGCTAGTATCAAGGAAAGGA
AACCTAGCACATTCGCAGAAGCTAGATCAAAACCCTCGACAACCGAAACA
GCTGAGCAGAAGTCTGATCCATCAAAAGCAGAGAAGCCAAATTTAAGCAT
TGAGAACGCCCCACAAATTGCTGGCAAGGCGAAGCAGACTGGAAAGTCGC
ACGCGCAAGAATCGAAAAGCACAGATACAGATAGCCTTTTACAGCAAGCT
GAAGATGGGCTTCGAGTATGGGAAGAAGTCTCTGAGGAGGCGGAGCAATT
CAGAAGCAATCCCGCTTTGAAAAGGGGTCGGCTTACTTTGAAGAAGAGAA
TTAATCTAGCCGTTAATCAGATCGCTGCGAGCGTGAAGCAGGTATGGCGG
AAAGTGGTTGATCTCACTAAGATCGTGGCTGAGATGAAGGCGAACTATAA
TACTATAGGCGAATCTTTCGTGATGAAGATGATCGCTGAACGTCTAATAA
GTGAATCTGATGGAAGTGCCGCTCTGAGTAAAACAACTGCGTTTGCAGTT
GCTGCAGTGATCGTTAGTTTGACTGCTAGCGTCGAAAATGTGAATAAGTT
CAGACTCGTATTCCTGGGGGCGTTCTATGATCACTGTATATACACTATTC
CAAGATATGAAAGAAAGCGCCAAGGAGAATCTGTCGATCATTACAAATCT
CGAATTGGCTACAAAGAAGGTGAAGACTCGGAAAGCTATCTTGAGCGAAT
GTGTGGCTGTGTCAATCTATTTGCCGCGGTTGTACAGACCGAAGACGTTT
ACACCGCTCAAAGAGTATCCGGAGCCCGGAATCCGTTTCCGCTATCGTGG
GGTTGGTGTATATTGGCTCGGCTGTGCAACAAGGAGCAAAGAAGTATTAC
ACCTTCCATTGTGTACGCTTACTTGGAGATCTCTGGTTATCGTCTTTCGA
AAGAGTATGGCCTACAGTTTAAGAAGCTCATGTACAGCATTAGCGAGGCC
GTGGTCAAGCGGGCAATCAAGTCTGCGCCGAAAGGACCGACTACAAGGCT
TCAGATCTTCGTAGAAGACTTCCAGCGAGCTGGATTCATTGTTCAGACAC
CCCCAGAAGGTCGAAAACTACCTAGATCGGATGCAGAAAACACATGA