Gcaud1879.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1879.t1
Unique Name	Gcaud1879.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	646

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_238_length_34707_cov_4.869829	contig	NODE_238_length_34707_cov_4.869829:12666..14603 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G0K8
Preferred name	PHO89
PFAMs	PHO4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01280,ko:K03306,ko:K14640
KEGG TC	2.A.20,2.A.20.2
GOs	GO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
Evalue	3.22e-107
EggNOG OGs	COG0306@1\|root,KOG2493@2759\|Eukaryota
EC	3.4.14.10
Description	inorganic phosphate transmembrane transporter activity
COG category	U
BRITE	ko00000,ko01000,ko01002,ko02000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1879	Gcaud1879	Gracilaria caudata M_176_S67 male	gene	NODE_238_length_34707_cov_4.869829 12666..14603 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1879.t1.stop1	Gcaud1879.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_238_length_34707_cov_4.869829 12666..12668 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1879.t1.CDS1	Gcaud1879.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 12666..14603 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1879.t1.exon1	Gcaud1879.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 12666..14603 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1879.t1.start1	Gcaud1879.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_238_length_34707_cov_4.869829 14601..14603 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1879.t1	Gcaud1879.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_238_length_34707_cov_4.869829 12666..14603 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_238_length_34707_cov_4.869829:12666..14603-
coding sequence from alignment at NODE_238_length_34707_cov_4.869829:12666..14603-

mRNA sequence

>Gcaud1879.t1 ID=Gcaud1879.t1|Name=Gcaud1879.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=646bp
MAEGFNWPLTGSPFELINGITIDSVDRYLWIVIVGGILAFAMAWGIGAND
VANAFATSVGAGSLDLKWACVIAAVMEFAGAVLLGGGVTDTVRKKIIKAD
VFNPLDSDGTANGPELLMTGFLVALITATTWLIVATYLSLPVSTTHSIIG
SLVGVGLAFRGREAVVWISDGSGFGKLKGLVGVVLSWIISPVLSAIFAIL
MFLIVRTLVLRREDSLKAGYLFMPLFYGITLSVTIFFIIFKGDKRFGIKK
KLSLGAAIGIAFGAGAVIAIISFFTIVPLAKKYVERWDARQKELAENPEL
AAAEAEKKAKVEGALKKVGINLNVDEDLGEDVIRMHDNVEKFDPKTERLF
TWVQVFTAAFDAFAHGANDVANAIAPFASIYQLYRNNGIISKIKTSEFEE
DGVFVGGKRDGEKFAEEDKIPDFESFCGKIGDDKYYACEPRFPFLSGGGS
DAKSATFSKYDESGKFIEDGTCYTECNPGSAAAFKTNKQDVPIWILALGG
AGIVAGLAMWGYRIIVAIGVKLTKLTPSRGFAIEIGAAITVLIASSVGIP
VSTTHCQVGATVGVGLVEFKTSTVNWKQFFFICLGWVFTVLLTGIMAAAI
YAVLIYTPQAFTRGDGPLNYCPGENLFQFNSEQQAFQGIGCSGLL*

spliced messenger RNA

>Gcaud1879.t1 ID=Gcaud1879.t1|Name=Gcaud1879.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:12666..14603- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAAGGTTTCAACTGGCCTCTCACCGGCTCCCCGTTCGAGCTCAT
CAACGGTATCACCATCGACTCTGTTGATAGATACCTATGGATTGTGATTG
TCGGCGGTATCCTCGCCTTTGCTATGGCCTGGGGTATTGGTGCAAATGAT
GTTGCCAATGCCTTCGCCACTTCCGTCGGTGCTGGTTCTTTGGACCTCAA
ATGGGCTTGTGTTATTGCCGCTGTGATGGAATTCGCTGGTGCCGTTCTTC
TCGGTGGCGGTGTCACTGATACCGTTCGTAAGAAGATCATCAAGGCTGAT
GTTTTCAACCCTCTTGACTCCGATGGTACCGCCAACGGTCCGGAGCTCCT
CATGACCGGTTTCTTGGTCGCTCTCATCACCGCCACCACTTGGTTGATTG
TCGCCACCTACCTGTCCCTTCCAGTGTCCACCACCCACTCCATCATTGGT
TCCCTCGTTGGCGTCGGTCTTGCCTTCCGTGGTCGTGAAGCTGTCGTTTG
GATCTCCGATGGTTCCGGCTTCGGCAAGCTCAAGGGCCTTGTGGGTGTTG
TCCTCTCCTGGATCATCTCCCCGGTTCTTTCCGCCATCTTCGCCATTCTC
ATGTTTTTGATCGTCCGTACCCTTGTGCTCCGTCGCGAAGACTCCCTCAA
GGCCGGTTACTTGTTCATGCCGCTCTTCTACGGTATCACCCTCTCCGTCA
CCATCTTCTTCATCATCTTCAAGGGTGATAAGCGTTTCGGTATCAAGAAG
AAGCTTTCTCTTGGCGCCGCCATCGGTATCGCTTTCGGTGCTGGTGCCGT
CATTGCCATCATCTCCTTCTTCACCATCGTCCCGCTTGCCAAGAAGTACG
TGGAGAGATGGGATGCCCGCCAGAAGGAGCTTGCCGAAAACCCTGAGCTC
GCCGCCGCCGAGGCCGAGAAGAAGGCCAAGGTCGAGGGTGCCCTCAAGAA
GGTCGGTATCAACCTCAACGTCGATGAGGACCTCGGCGAGGACGTTATCC
GTATGCATGACAACGTCGAGAAGTTCGACCCGAAGACCGAGAGACTGTTC
ACCTGGGTCCAGGTTTTCACCGCCGCCTTCGATGCCTTCGCCCATGGTGC
CAATGATGTTGCCAATGCCATTGCTCCGTTCGCCTCTATCTACCAGTTGT
ACAGAAATAACGGTATCATCTCCAAGATTAAGACCAGCGAGTTCGAAGAG
GACGGTGTCTTCGTCGGTGGAAAGCGTGACGGCGAAAAGTTCGCGGAGGA
AGACAAGATTCCGGACTTTGAGTCCTTCTGTGGCAAGATTGGTGACGACA
AATACTACGCTTGCGAGCCCAGATTCCCATTCTTGTCTGGTGGTGGATCT
GACGCCAAGTCTGCAACCTTCTCCAAGTATGACGAGTCGGGCAAGTTCAT
TGAAGACGGTACTTGCTACACCGAATGTAACCCGGGTTCCGCCGCCGCTT
TCAAGACTAACAAGCAGGACGTGCCGATCTGGATTCTCGCCCTCGGTGGC
GCCGGTATCGTCGCTGGTCTCGCCATGTGGGGTTACCGTATCATTGTCGC
TATTGGTGTGAAGCTCACTAAGCTCACTCCGTCTCGTGGTTTCGCCATTG
AGATTGGAGCTGCCATCACTGTCCTCATCGCCTCCAGCGTTGGTATCCCG
GTTTCTACCACTCATTGTCAGGTCGGTGCCACCGTGGGCGTTGGTCTCGT
TGAGTTCAAGACCTCCACCGTCAACTGGAAGCAGTTCTTCTTCATCTGCC
TCGGATGGGTGTTCACTGTCCTCCTCACCGGTATCATGGCCGCCGCCATC
TACGCCGTCCTCATCTACACCCCGCAAGCCTTCACCCGCGGTGACGGACC
CCTCAACTACTGCCCGGGAGAGAACCTCTTCCAGTTCAACTCTGAGCAGC
AAGCCTTCCAGGGTATTGGCTGCTCTGGTCTTCTTTAA

protein sequence of Gcaud1879.t1

>Gcaud1879.t1 ID=Gcaud1879.t1|Name=Gcaud1879.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=646bp
MAEGFNWPLTGSPFELINGITIDSVDRYLWIVIVGGILAFAMAWGIGAND
VANAFATSVGAGSLDLKWACVIAAVMEFAGAVLLGGGVTDTVRKKIIKAD
VFNPLDSDGTANGPELLMTGFLVALITATTWLIVATYLSLPVSTTHSIIG
SLVGVGLAFRGREAVVWISDGSGFGKLKGLVGVVLSWIISPVLSAIFAIL
MFLIVRTLVLRREDSLKAGYLFMPLFYGITLSVTIFFIIFKGDKRFGIKK
KLSLGAAIGIAFGAGAVIAIISFFTIVPLAKKYVERWDARQKELAENPEL
AAAEAEKKAKVEGALKKVGINLNVDEDLGEDVIRMHDNVEKFDPKTERLF
TWVQVFTAAFDAFAHGANDVANAIAPFASIYQLYRNNGIISKIKTSEFEE
DGVFVGGKRDGEKFAEEDKIPDFESFCGKIGDDKYYACEPRFPFLSGGGS
DAKSATFSKYDESGKFIEDGTCYTECNPGSAAAFKTNKQDVPIWILALGG
AGIVAGLAMWGYRIIVAIGVKLTKLTPSRGFAIEIGAAITVLIASSVGIP
VSTTHCQVGATVGVGLVEFKTSTVNWKQFFFICLGWVFTVLLTGIMAAAI
YAVLIYTPQAFTRGDGPLNYCPGENLFQFNSEQQAFQGIGCSGLL*

mRNA from alignment at NODE_238_length_34707_cov_4.869829:12666..14603-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1879.t1 ID=Gcaud1879.t1|Name=Gcaud1879.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:12666..14603- (Gracilaria caudata M_176_S67 male)
ATGGCTGAAGGTTTCAACTGGCCTCTCACCGGCTCCCCGTTCGAGCTCAT
CAACGGTATCACCATCGACTCTGTTGATAGATACCTATGGATTGTGATTG
TCGGCGGTATCCTCGCCTTTGCTATGGCCTGGGGTATTGGTGCAAATGAT
GTTGCCAATGCCTTCGCCACTTCCGTCGGTGCTGGTTCTTTGGACCTCAA
ATGGGCTTGTGTTATTGCCGCTGTGATGGAATTCGCTGGTGCCGTTCTTC
TCGGTGGCGGTGTCACTGATACCGTTCGTAAGAAGATCATCAAGGCTGAT
GTTTTCAACCCTCTTGACTCCGATGGTACCGCCAACGGTCCGGAGCTCCT
CATGACCGGTTTCTTGGTCGCTCTCATCACCGCCACCACTTGGTTGATTG
TCGCCACCTACCTGTCCCTTCCAGTGTCCACCACCCACTCCATCATTGGT
TCCCTCGTTGGCGTCGGTCTTGCCTTCCGTGGTCGTGAAGCTGTCGTTTG
GATCTCCGATGGTTCCGGCTTCGGCAAGCTCAAGGGCCTTGTGGGTGTTG
TCCTCTCCTGGATCATCTCCCCGGTTCTTTCCGCCATCTTCGCCATTCTC
ATGTTTTTGATCGTCCGTACCCTTGTGCTCCGTCGCGAAGACTCCCTCAA
GGCCGGTTACTTGTTCATGCCGCTCTTCTACGGTATCACCCTCTCCGTCA
CCATCTTCTTCATCATCTTCAAGGGTGATAAGCGTTTCGGTATCAAGAAG
AAGCTTTCTCTTGGCGCCGCCATCGGTATCGCTTTCGGTGCTGGTGCCGT
CATTGCCATCATCTCCTTCTTCACCATCGTCCCGCTTGCCAAGAAGTACG
TGGAGAGATGGGATGCCCGCCAGAAGGAGCTTGCCGAAAACCCTGAGCTC
GCCGCCGCCGAGGCCGAGAAGAAGGCCAAGGTCGAGGGTGCCCTCAAGAA
GGTCGGTATCAACCTCAACGTCGATGAGGACCTCGGCGAGGACGTTATCC
GTATGCATGACAACGTCGAGAAGTTCGACCCGAAGACCGAGAGACTGTTC
ACCTGGGTCCAGGTTTTCACCGCCGCCTTCGATGCCTTCGCCCATGGTGC
CAATGATGTTGCCAATGCCATTGCTCCGTTCGCCTCTATCTACCAGTTGT
ACAGAAATAACGGTATCATCTCCAAGATTAAGACCAGCGAGTTCGAAGAG
GACGGTGTCTTCGTCGGTGGAAAGCGTGACGGCGAAAAGTTCGCGGAGGA
AGACAAGATTCCGGACTTTGAGTCCTTCTGTGGCAAGATTGGTGACGACA
AATACTACGCTTGCGAGCCCAGATTCCCATTCTTGTCTGGTGGTGGATCT
GACGCCAAGTCTGCAACCTTCTCCAAGTATGACGAGTCGGGCAAGTTCAT
TGAAGACGGTACTTGCTACACCGAATGTAACCCGGGTTCCGCCGCCGCTT
TCAAGACTAACAAGCAGGACGTGCCGATCTGGATTCTCGCCCTCGGTGGC
GCCGGTATCGTCGCTGGTCTCGCCATGTGGGGTTACCGTATCATTGTCGC
TATTGGTGTGAAGCTCACTAAGCTCACTCCGTCTCGTGGTTTCGCCATTG
AGATTGGAGCTGCCATCACTGTCCTCATCGCCTCCAGCGTTGGTATCCCG
GTTTCTACCACTCATTGTCAGGTCGGTGCCACCGTGGGCGTTGGTCTCGT
TGAGTTCAAGACCTCCACCGTCAACTGGAAGCAGTTCTTCTTCATCTGCC
TCGGATGGGTGTTCACTGTCCTCCTCACCGGTATCATGGCCGCCGCCATC
TACGCCGTCCTCATCTACACCCCGCAAGCCTTCACCCGCGGTGACGGACC
CCTCAACTACTGCCCGGGAGAGAACCTCTTCCAGTTCAACTCTGAGCAGC
AAGCCTTCCAGGGTATTGGCTGCTCTGGTCTTCTTTAA

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:12666..14603-

>Gcaud1879.t1 ID=Gcaud1879.t1|Name=Gcaud1879.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1938bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:12666..14603- (Gracilaria caudata M_176_S67 male)
ATGGCTGAAGGTTTCAACTGGCCTCTCACCGGCTCCCCGTTCGAGCTCAT
CAACGGTATCACCATCGACTCTGTTGATAGATACCTATGGATTGTGATTG
TCGGCGGTATCCTCGCCTTTGCTATGGCCTGGGGTATTGGTGCAAATGAT
GTTGCCAATGCCTTCGCCACTTCCGTCGGTGCTGGTTCTTTGGACCTCAA
ATGGGCTTGTGTTATTGCCGCTGTGATGGAATTCGCTGGTGCCGTTCTTC
TCGGTGGCGGTGTCACTGATACCGTTCGTAAGAAGATCATCAAGGCTGAT
GTTTTCAACCCTCTTGACTCCGATGGTACCGCCAACGGTCCGGAGCTCCT
CATGACCGGTTTCTTGGTCGCTCTCATCACCGCCACCACTTGGTTGATTG
TCGCCACCTACCTGTCCCTTCCAGTGTCCACCACCCACTCCATCATTGGT
TCCCTCGTTGGCGTCGGTCTTGCCTTCCGTGGTCGTGAAGCTGTCGTTTG
GATCTCCGATGGTTCCGGCTTCGGCAAGCTCAAGGGCCTTGTGGGTGTTG
TCCTCTCCTGGATCATCTCCCCGGTTCTTTCCGCCATCTTCGCCATTCTC
ATGTTTTTGATCGTCCGTACCCTTGTGCTCCGTCGCGAAGACTCCCTCAA
GGCCGGTTACTTGTTCATGCCGCTCTTCTACGGTATCACCCTCTCCGTCA
CCATCTTCTTCATCATCTTCAAGGGTGATAAGCGTTTCGGTATCAAGAAG
AAGCTTTCTCTTGGCGCCGCCATCGGTATCGCTTTCGGTGCTGGTGCCGT
CATTGCCATCATCTCCTTCTTCACCATCGTCCCGCTTGCCAAGAAGTACG
TGGAGAGATGGGATGCCCGCCAGAAGGAGCTTGCCGAAAACCCTGAGCTC
GCCGCCGCCGAGGCCGAGAAGAAGGCCAAGGTCGAGGGTGCCCTCAAGAA
GGTCGGTATCAACCTCAACGTCGATGAGGACCTCGGCGAGGACGTTATCC
GTATGCATGACAACGTCGAGAAGTTCGACCCGAAGACCGAGAGACTGTTC
ACCTGGGTCCAGGTTTTCACCGCCGCCTTCGATGCCTTCGCCCATGGTGC
CAATGATGTTGCCAATGCCATTGCTCCGTTCGCCTCTATCTACCAGTTGT
ACAGAAATAACGGTATCATCTCCAAGATTAAGACCAGCGAGTTCGAAGAG
GACGGTGTCTTCGTCGGTGGAAAGCGTGACGGCGAAAAGTTCGCGGAGGA
AGACAAGATTCCGGACTTTGAGTCCTTCTGTGGCAAGATTGGTGACGACA
AATACTACGCTTGCGAGCCCAGATTCCCATTCTTGTCTGGTGGTGGATCT
GACGCCAAGTCTGCAACCTTCTCCAAGTATGACGAGTCGGGCAAGTTCAT
TGAAGACGGTACTTGCTACACCGAATGTAACCCGGGTTCCGCCGCCGCTT
TCAAGACTAACAAGCAGGACGTGCCGATCTGGATTCTCGCCCTCGGTGGC
GCCGGTATCGTCGCTGGTCTCGCCATGTGGGGTTACCGTATCATTGTCGC
TATTGGTGTGAAGCTCACTAAGCTCACTCCGTCTCGTGGTTTCGCCATTG
AGATTGGAGCTGCCATCACTGTCCTCATCGCCTCCAGCGTTGGTATCCCG
GTTTCTACCACTCATTGTCAGGTCGGTGCCACCGTGGGCGTTGGTCTCGT
TGAGTTCAAGACCTCCACCGTCAACTGGAAGCAGTTCTTCTTCATCTGCC
TCGGATGGGTGTTCACTGTCCTCCTCACCGGTATCATGGCCGCCGCCATC
TACGCCGTCCTCATCTACACCCCGCAAGCCTTCACCCGCGGTGACGGACC
CCTCAACTACTGCCCGGGAGAGAACCTCTTCCAGTTCAACTCTGAGCAGC
AAGCCTTCCAGGGTATTGGCTGCTCTGGTCTTCTTTAA