Gcaud1887.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1887.t1
Unique Name	Gcaud1887.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	514

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_238_length_34707_cov_4.869829	contig	NODE_238_length_34707_cov_4.869829:31449..32990 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	554065.XP_005845973.1
PFAMs	DEAD,Helicase_C
Max annot lvl	3041\|Chlorophyta
Evalue	2.2e-44
EggNOG OGs	COG0513@1\|root,KOG0331@2759\|Eukaryota,37KU0@33090\|Viridiplantae,34H8F@3041\|Chlorophyta
Description	DEAD-like helicases superfamily
COG category	A

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1887	Gcaud1887	Gracilaria caudata M_176_S67 male	gene	NODE_238_length_34707_cov_4.869829 31449..32990 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1887.t1.stop1	Gcaud1887.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_238_length_34707_cov_4.869829 31449..31451 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1887.t1.CDS1	Gcaud1887.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 31449..32990 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1887.t1.exon1	Gcaud1887.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 31449..32990 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1887.t1.start1	Gcaud1887.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_238_length_34707_cov_4.869829 32988..32990 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1887.t1	Gcaud1887.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_238_length_34707_cov_4.869829 31449..32990 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_238_length_34707_cov_4.869829:31449..32990-
coding sequence from alignment at NODE_238_length_34707_cov_4.869829:31449..32990-

mRNA sequence

>Gcaud1887.t1 ID=Gcaud1887.t1|Name=Gcaud1887.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=514bp
MIRRFLAWSSRELLYRQLRIRWCASVPTIAPHLHLPSITPDRKSFDSLGL
HASIQDALSANEIIEPTNIQAQAAPILLAHRNAVIAAETGAGKTIAYLAP
LISSLKHSEESANADGLSRGMSLSPMRPSILVVVPTRELSAQVFSVSKSL
SHIARFRVRAAVGGPQIGRSRKRLQDSPVDLIVGTPGSIENMRNQQLLYL
SRISTIVLDEADELISSSAGFGPQLTGLMNVLREKDVQFVYSAATVPTSM
EIGLRRWHGGNLDVARGSRLHRATSSSQVKTTFIRVDGSEDAKLQKLMEV
FSVVRKGTNSGKVLIFCDNVKRRETIVQEIRSRGTDVVHLSGEGRDRDDR
NTDWDAFSSGEVWVAVCSKSFGRGIDDHKIDTVILFDVPMTGSEYLHRIG
RIRGTGRAYVLVGRREQAIAEELFLSHVKGLPIAGVCPKKAWKEYTGAGR
DRIATDKVLRTARSKRHARWVDERLKADGTFRGRKRQVRIKRDNSREGDY
LLVRYNSRRRNAP*

spliced messenger RNA

>Gcaud1887.t1 ID=Gcaud1887.t1|Name=Gcaud1887.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:31449..32990- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGTCGCTTCTTGGCATGGTCATCTCGAGAATTGCTCTACCGACA
ATTACGTATTCGCTGGTGCGCTTCAGTACCGACAATTGCACCTCATCTTC
ATCTTCCATCAATAACCCCGGACAGGAAATCTTTCGATTCATTAGGTTTA
CATGCGTCTATACAAGATGCCCTGTCTGCAAATGAAATCATTGAACCCAC
AAACATACAAGCACAAGCCGCACCTATACTGCTGGCGCACAGAAATGCTG
TCATTGCTGCTGAAACCGGCGCGGGGAAGACAATTGCCTATCTTGCCCCA
CTTATTTCATCCCTGAAGCACTCGGAAGAAAGTGCCAACGCTGATGGGCT
GAGCAGAGGAATGTCATTGTCTCCGATGCGCCCCTCAATTCTCGTGGTGG
TACCGACCAGGGAGTTGTCTGCTCAAGTGTTCTCAGTATCAAAATCGCTA
TCGCATATCGCAAGGTTCCGAGTTAGAGCGGCAGTAGGCGGCCCCCAAAT
TGGAAGATCCCGAAAACGACTGCAAGACTCTCCGGTGGATTTGATAGTCG
GTACGCCTGGAAGCATCGAAAACATGCGCAACCAGCAACTCTTATATCTT
TCTCGCATTTCAACTATAGTATTAGATGAGGCCGATGAACTGATATCATC
CAGCGCTGGATTTGGACCTCAGCTCACTGGACTTATGAACGTGCTACGCG
AAAAGGATGTCCAGTTCGTCTACTCTGCTGCCACAGTTCCAACATCGATG
GAAATTGGGTTGCGACGTTGGCATGGCGGGAATCTTGACGTTGCTCGAGG
AAGCCGACTACATCGAGCGACTTCATCATCACAAGTGAAAACGACTTTCA
TCAGGGTTGATGGATCTGAAGATGCAAAGCTTCAGAAGTTGATGGAAGTT
TTCTCTGTGGTCAGGAAAGGCACTAACTCCGGGAAGGTGTTAATCTTCTG
TGACAATGTCAAACGAAGGGAAACAATAGTGCAAGAAATCCGTTCGAGAG
GAACAGATGTAGTTCACTTATCTGGAGAAGGACGGGATAGGGATGATCGA
AATACAGATTGGGACGCTTTTTCTTCCGGCGAGGTTTGGGTGGCAGTCTG
CTCGAAAAGCTTCGGGAGAGGAATTGATGACCACAAGATTGATACTGTGA
TCTTATTCGACGTACCGATGACTGGCAGCGAATATCTACATCGAATCGGA
AGAATCAGGGGCACCGGAAGGGCATACGTTCTTGTGGGAAGACGAGAACA
GGCTATTGCCGAAGAGCTGTTTCTGTCTCATGTCAAGGGTCTCCCCATTG
CCGGCGTATGTCCAAAGAAAGCTTGGAAAGAATACACGGGAGCGGGACGT
GACCGTATCGCCACAGACAAGGTTTTGAGGACGGCCAGGTCTAAGAGACA
TGCAAGATGGGTAGATGAGAGACTGAAGGCAGATGGTACCTTCAGAGGAA
GAAAGCGTCAAGTCCGTATTAAGAGGGATAACAGCAGGGAAGGGGATTAC
TTGCTTGTGAGATACAACAGCAGACGCAGAAACGCACCCTAA

protein sequence of Gcaud1887.t1

>Gcaud1887.t1 ID=Gcaud1887.t1|Name=Gcaud1887.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=514bp
MIRRFLAWSSRELLYRQLRIRWCASVPTIAPHLHLPSITPDRKSFDSLGL
HASIQDALSANEIIEPTNIQAQAAPILLAHRNAVIAAETGAGKTIAYLAP
LISSLKHSEESANADGLSRGMSLSPMRPSILVVVPTRELSAQVFSVSKSL
SHIARFRVRAAVGGPQIGRSRKRLQDSPVDLIVGTPGSIENMRNQQLLYL
SRISTIVLDEADELISSSAGFGPQLTGLMNVLREKDVQFVYSAATVPTSM
EIGLRRWHGGNLDVARGSRLHRATSSSQVKTTFIRVDGSEDAKLQKLMEV
FSVVRKGTNSGKVLIFCDNVKRRETIVQEIRSRGTDVVHLSGEGRDRDDR
NTDWDAFSSGEVWVAVCSKSFGRGIDDHKIDTVILFDVPMTGSEYLHRIG
RIRGTGRAYVLVGRREQAIAEELFLSHVKGLPIAGVCPKKAWKEYTGAGR
DRIATDKVLRTARSKRHARWVDERLKADGTFRGRKRQVRIKRDNSREGDY
LLVRYNSRRRNAP*

mRNA from alignment at NODE_238_length_34707_cov_4.869829:31449..32990-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1887.t1 ID=Gcaud1887.t1|Name=Gcaud1887.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1542bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:31449..32990- (Gracilaria caudata M_176_S67 male)
ATGATTCGTCGCTTCTTGGCATGGTCATCTCGAGAATTGCTCTACCGACA
ATTACGTATTCGCTGGTGCGCTTCAGTACCGACAATTGCACCTCATCTTC
ATCTTCCATCAATAACCCCGGACAGGAAATCTTTCGATTCATTAGGTTTA
CATGCGTCTATACAAGATGCCCTGTCTGCAAATGAAATCATTGAACCCAC
AAACATACAAGCACAAGCCGCACCTATACTGCTGGCGCACAGAAATGCTG
TCATTGCTGCTGAAACCGGCGCGGGGAAGACAATTGCCTATCTTGCCCCA
CTTATTTCATCCCTGAAGCACTCGGAAGAAAGTGCCAACGCTGATGGGCT
GAGCAGAGGAATGTCATTGTCTCCGATGCGCCCCTCAATTCTCGTGGTGG
TACCGACCAGGGAGTTGTCTGCTCAAGTGTTCTCAGTATCAAAATCGCTA
TCGCATATCGCAAGGTTCCGAGTTAGAGCGGCAGTAGGCGGCCCCCAAAT
TGGAAGATCCCGAAAACGACTGCAAGACTCTCCGGTGGATTTGATAGTCG
GTACGCCTGGAAGCATCGAAAACATGCGCAACCAGCAACTCTTATATCTT
TCTCGCATTTCAACTATAGTATTAGATGAGGCCGATGAACTGATATCATC
CAGCGCTGGATTTGGACCTCAGCTCACTGGACTTATGAACGTGCTACGCG
AAAAGGATGTCCAGTTCGTCTACTCTGCTGCCACAGTTCCAACATCGATG
GAAATTGGGTTGCGACGTTGGCATGGCGGGAATCTTGACGTTGCTCGAGG
AAGCCGACTACATCGAGCGACTTCATCATCACAAGTGAAAACGACTTTCA
TCAGGGTTGATGGATCTGAAGATGCAAAGCTTCAGAAGTTGATGGAAGTT
TTCTCTGTGGTCAGGAAAGGCACTAACTCCGGGAAGGTGTTAATCTTCTG
TGACAATGTCAAACGAAGGGAAACAATAGTGCAAGAAATCCGTTCGAGAG
GAACAGATGTAGTTCACTTATCTGGAGAAGGACGGGATAGGGATGATCGA
AATACAGATTGGGACGCTTTTTCTTCCGGCGAGGTTTGGGTGGCAGTCTG
CTCGAAAAGCTTCGGGAGAGGAATTGATGACCACAAGATTGATACTGTGA
TCTTATTCGACGTACCGATGACTGGCAGCGAATATCTACATCGAATCGGA
AGAATCAGGGGCACCGGAAGGGCATACGTTCTTGTGGGAAGACGAGAACA
GGCTATTGCCGAAGAGCTGTTTCTGTCTCATGTCAAGGGTCTCCCCATTG
CCGGCGTATGTCCAAAGAAAGCTTGGAAAGAATACACGGGAGCGGGACGT
GACCGTATCGCCACAGACAAGGTTTTGAGGACGGCCAGGTCTAAGAGACA
TGCAAGATGGGTAGATGAGAGACTGAAGGCAGATGGTACCTTCAGAGGAA
GAAAGCGTCAAGTCCGTATTAAGAGGGATAACAGCAGGGAAGGGGATTAC
TTGCTTGTGAGATACAACAGCAGACGCAGAAACGCACCCTAA

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:31449..32990-

>Gcaud1887.t1 ID=Gcaud1887.t1|Name=Gcaud1887.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1542bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:31449..32990- (Gracilaria caudata M_176_S67 male)
ATGATTCGTCGCTTCTTGGCATGGTCATCTCGAGAATTGCTCTACCGACA
ATTACGTATTCGCTGGTGCGCTTCAGTACCGACAATTGCACCTCATCTTC
ATCTTCCATCAATAACCCCGGACAGGAAATCTTTCGATTCATTAGGTTTA
CATGCGTCTATACAAGATGCCCTGTCTGCAAATGAAATCATTGAACCCAC
AAACATACAAGCACAAGCCGCACCTATACTGCTGGCGCACAGAAATGCTG
TCATTGCTGCTGAAACCGGCGCGGGGAAGACAATTGCCTATCTTGCCCCA
CTTATTTCATCCCTGAAGCACTCGGAAGAAAGTGCCAACGCTGATGGGCT
GAGCAGAGGAATGTCATTGTCTCCGATGCGCCCCTCAATTCTCGTGGTGG
TACCGACCAGGGAGTTGTCTGCTCAAGTGTTCTCAGTATCAAAATCGCTA
TCGCATATCGCAAGGTTCCGAGTTAGAGCGGCAGTAGGCGGCCCCCAAAT
TGGAAGATCCCGAAAACGACTGCAAGACTCTCCGGTGGATTTGATAGTCG
GTACGCCTGGAAGCATCGAAAACATGCGCAACCAGCAACTCTTATATCTT
TCTCGCATTTCAACTATAGTATTAGATGAGGCCGATGAACTGATATCATC
CAGCGCTGGATTTGGACCTCAGCTCACTGGACTTATGAACGTGCTACGCG
AAAAGGATGTCCAGTTCGTCTACTCTGCTGCCACAGTTCCAACATCGATG
GAAATTGGGTTGCGACGTTGGCATGGCGGGAATCTTGACGTTGCTCGAGG
AAGCCGACTACATCGAGCGACTTCATCATCACAAGTGAAAACGACTTTCA
TCAGGGTTGATGGATCTGAAGATGCAAAGCTTCAGAAGTTGATGGAAGTT
TTCTCTGTGGTCAGGAAAGGCACTAACTCCGGGAAGGTGTTAATCTTCTG
TGACAATGTCAAACGAAGGGAAACAATAGTGCAAGAAATCCGTTCGAGAG
GAACAGATGTAGTTCACTTATCTGGAGAAGGACGGGATAGGGATGATCGA
AATACAGATTGGGACGCTTTTTCTTCCGGCGAGGTTTGGGTGGCAGTCTG
CTCGAAAAGCTTCGGGAGAGGAATTGATGACCACAAGATTGATACTGTGA
TCTTATTCGACGTACCGATGACTGGCAGCGAATATCTACATCGAATCGGA
AGAATCAGGGGCACCGGAAGGGCATACGTTCTTGTGGGAAGACGAGAACA
GGCTATTGCCGAAGAGCTGTTTCTGTCTCATGTCAAGGGTCTCCCCATTG
CCGGCGTATGTCCAAAGAAAGCTTGGAAAGAATACACGGGAGCGGGACGT
GACCGTATCGCCACAGACAAGGTTTTGAGGACGGCCAGGTCTAAGAGACA
TGCAAGATGGGTAGATGAGAGACTGAAGGCAGATGGTACCTTCAGAGGAA
GAAAGCGTCAAGTCCGTATTAAGAGGGATAACAGCAGGGAAGGGGATTAC
TTGCTTGTGAGATACAACAGCAGACGCAGAAACGCACCCTAA