Gcaud1885.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1885.t1
Unique NameGcaud1885.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length441
Homology
BLAST of Gcaud1885.t1 vs. uniprot
Match: A0A2V3IKE7_9FLOR (X-linked retinitis pigmentosa GTPase regulator n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKE7_9FLOR)

HSP 1 Score: 608 bits (1567), Expect = 6.800e-215
Identity = 342/439 (77.90%), Postives = 375/439 (85.42%), Query Frame = 0
Query:    1 MLCCCDLTAGDLAALKSAALMENVQSLAYATEVAAAALVYAHPNGRALVDNKLSSETWISLLRYLQRLDGAAAPSGRTEVWSCGRNDLGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGLGNRTQQERFSKLDLLPARMIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPIGCFGRRVVRIACGSDTTMLLTVDNMVLVTGKRHGGLSVIGGLGMSRVTHLSVGEGFAVASTDESEVAVSNHRKRFHVTDELLHISAASVSAGLSHYAITTDDGCAFAMGTNTFGQIAAGEMGLTIEGSQNARVIRPHRVSLSRVQIPKGYRALRAAAGMFHTLYLLEREPPC 439
            +L C  L A DLAAL+ AA +E V ++A A E AAA LVYAHPNG AL +NKL SETWISLL ++QRLDGAA P+G TEVW+ GRN+ GQG RP   DQN++T +YR+AS+A EFE P A +I + AG HHS AVSELG LHVAGANHRGQLGLGDLSLRSAWTPV+DLKWARVAQVACG GHT VLTG+G VLVTGAN+FGQLGLG+R Q+ RF+K+ L PARMIXXXXXXXXXXXXXXXXXXXXXXXXXXXX          APIGCFGR+VVRIACGSDTTMLLTVDNM+LVTGKRH GLSVIGGLGMSRVTHLSVGEGFAVASTDESEVAVS HRKRF VTDELLHISA+ VSAGLSHYAITTDDGC FA GTNTFGQ+AAGEMGLTIEGSQNARV+RPHRV LSRV +P GYRAL  AAGMFHTL+LLE+E PC
Sbjct:   26 LLYCSGLNAKDLAALRCAAQLEKVYTVAAAAEAAAAVLVYAHPNGAALFNNKLPSETWISLLMFVQRLDGAARPTGATEVWTAGRNEFGQGARPGHVDQNTITQSYRMASDAYEFESPPARIIAVKAGAHHSLAVSELGALHVAGANHRGQLGLGDLSLRSAWTPVLDLKWARVAQVACGLGHTAVLTGEGFVLVTGANDFGQLGLGDRAQRLRFTKVGLPPARMIXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRRDRGRDKFAPIGCFGRQVVRIACGSDTTMLLTVDNMILVTGKRHCGLSVIGGLGMSRVTHLSVGEGFAVASTDESEVAVSVHRKRFQVTDELLHISASCVSAGLSHYAITTDDGCVFATGTNTFGQVAAGEMGLTIEGSQNARVVRPHRVPLSRVAVPPGYRALCVAAGMFHTLFLLEKEEPC 464          
BLAST of Gcaud1885.t1 vs. uniprot
Match: A0A194SB85_RHOGW (Uncharacterized protein n=1 Tax=Rhodotorula graminis (strain WP1) TaxID=578459 RepID=A0A194SB85_RHOGW)

HSP 1 Score: 81.6 bits (200), Expect = 2.860e-13
Identity = 58/161 (36.02%), Postives = 81/161 (50.31%), Query Frame = 0
Query:   64 YLQRLDGAAAPSGRTEVWSCGRNDLGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLI---------MISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWA---RVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGLGNRTQQ 212
            +L  + G  +    +EVWS G +  GQ   P  +      P+    S    ++RP+   I          +S G  HSA V+  G  ++ G+N  GQLG+G+     A   +V+L       VAQVACG  HTV+LT  G V VTGAN+ GQLGLG+ T +
Sbjct:  180 FLVLVGGEQSSPSSSEVWSFGDSRYGQ-AGPFPSPSLVANPSSTTTSR---YDRPSLQHIAFFDGLHPVQVSCGAFHSAVVTAHGAAYLFGSNKAGQLGVGEGEPGGAEPVLVELGEEDEDEVAQVACGAAHTVLLTKSGQVWVTGANDDGQLGLGDTTSR 336          
BLAST of Gcaud1885.t1 vs. uniprot
Match: A0A4U1EJW3_MONMO (Uncharacterized protein n=1 Tax=Monodon monoceros TaxID=40151 RepID=A0A4U1EJW3_MONMO)

HSP 1 Score: 73.9 bits (180), Expect = 4.750e-12
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = 0
Query:  122 LIMISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGLGNRTQQ 212
            ++ I+ G   S AV   G ++V G N  GQLGLG    +     V  L+  RV +VACG+ HT+VLT +G V   GAN +GQLG GN++ Q
Sbjct:   53 VVNIACGQMCSMAVVNTGEVYVWGYNGNGQLGLGSSGNQPTPCRVAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQ 143          
BLAST of Gcaud1885.t1 vs. uniprot
Match: UPI001C8AA601 (secretion-regulating guanine nucleotide exchange factor n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8AA601)

HSP 1 Score: 78.2 bits (191), Expect = 4.940e-12
Identity = 47/122 (38.52%), Postives = 62/122 (50.82%), Query Frame = 0
Query:   88 LGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGLGNR 209
            LGQG R D  +  S     +     C           I+ G  HSA ++E G L + G NH+GQLGL   +    + P       RV QV+CG+  +V+LTG G VLV G+N FGQLG+  R
Sbjct:   27 LGQGHREDQAEPRSADDGLQAEKTRC-----------ITGGGGHSAVITESGELLMCGQNHKGQLGLSHTADVLTFQPCPLPAGTRVQQVSCGWDFSVILTGDGQVLVCGSNAFGQLGVSPR 137          
BLAST of Gcaud1885.t1 vs. uniprot
Match: A0A7K8X3E2_9PICI (RCBT2 protein (Fragment) n=7 Tax=Archelosauria TaxID=1329799 RepID=A0A7K8X3E2_9PICI)

HSP 1 Score: 77.0 bits (188), Expect = 8.950e-12
Identity = 54/134 (40.30%), Postives = 72/134 (53.73%), Query Frame = 0
Query:   79 EVWSCGRNDLGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGLGNRTQQ 212
            EV++ G N+ GQ V   S    S+    RV S  C   +   N   I+ G   S AV E G ++V G N  GQLGLG    +     +  L+  RV +VACG+ HT+VLT +G V   GAN +GQLG GN++ Q
Sbjct:  160 EVYTWGYNNSGQ-VGSGSTANQSIP--RRVTS--CLQNKVVVN---IACGQMCSMAVVENGEVYVWGYNGNGQLGLGSSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQVYAWGANSYGQLGTGNKSNQ 285          
BLAST of Gcaud1885.t1 vs. uniprot
Match: UPI00112BC9B0 (RCC1 and BTB domain-containing protein 2 isoform X1 n=1 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112BC9B0)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-11
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 0
Query:   79 EVWSCGRNDLGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGLGNRTQQ 212
            EV+S G N+ GQ     + +Q    PT R  +     +    N++ I+ G   SAAV++ G ++V G N  GQLGLG          V  L+   + Q+ CG  HT+VLT +G + V GAN +GQLG GN++ Q
Sbjct:  148 EVYSWGYNNSGQVGSGSTANQ----PTPRRVTSCLNNK----NVVSIACGQLSSAAVTDNGEVYVWGYNGNGQLGLGSTGNLPTPCRVAALQGTHILQIVCGNAHTLVLTDEGGLYVWGANSYGQLGTGNKSNQ 273          
BLAST of Gcaud1885.t1 vs. uniprot
Match: A0A1W0A7F7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A7F7_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.020e-11
Identity = 47/110 (42.73%), Postives = 61/110 (55.45%), Query Frame = 0
Query:   80 VWSCGRNDLGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTG 189
            ++  GRND GQ    DSN Q       R+++    F+     ++ IS G +H+ AV++ G L+V G N+ GQLG GD   R   TPV      RVA VA GF HTVVLTG
Sbjct:  711 IYGFGRNDYGQLGIGDSNSQQ------RISTPQLIFDLEEKEIVRISCGCYHTIAVADNGMLYVFGRNNHGQLGTGDTVERLTPTPVDIFVGKRVAMVAAGFYHTVVLTG 814          
BLAST of Gcaud1885.t1 vs. uniprot
Match: A0A482SSS9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SSS9_9ARCH)

HSP 1 Score: 73.9 bits (180), Expect = 1.080e-11
Identity = 50/128 (39.06%), Postives = 71/128 (55.47%), Query Frame = 0
Query:   80 VWSCGRNDLGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRGQLGL-GDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGL 206
            V+SCGRND GQ    D+ D+   TP   +++          N++ IS G  H+AA +  G ++V G N  GQLGL G  SL+      V  +   VAQV CG+ HT+VL+  G+V   G N++GQ+ L
Sbjct:   42 VFSCGRNDSGQLGHGDTVDKK--TPQAVLSAPK--------NIVSISCGQFHTAACTTQGIVYVCGKNDYGQLGLDGTASLKFFSKISVPSEIDHVAQVCCGYYHTLVLSSNGMVGGFGRNDYGQVML 159          
BLAST of Gcaud1885.t1 vs. uniprot
Match: A0A7J8DZ43_ROUAE (RCC1 and BTB domain containing protein 2 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8DZ43_ROUAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.260e-11
Identity = 52/134 (38.81%), Postives = 74/134 (55.22%), Query Frame = 0
Query:   79 EVWSCGRNDLGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGLGNRTQQ 212
            EV++ G N+ GQ     + +Q    P  R  + AC   +   N   I+ G   S AV + G ++V G N  GQLG+G    +S    +  L+  RV +VACG+ HT+VLT +G V V GAN +GQLG GN++ Q
Sbjct:  148 EVFAWGYNNSGQIGSGSTANQ----PIPRRVT-ACLQNKVVVN---IACGQMCSVAVVDNGEVYVWGYNGNGQLGIGSNGNQSTPCRIAALQGIRVQRVACGYAHTLVLTDEGQVYVWGANSYGQLGTGNKSNQ 273          
BLAST of Gcaud1885.t1 vs. uniprot
Match: G1KBU7_ANOCA (BTB domain-containing protein n=6 Tax=Iguania TaxID=8511 RepID=G1KBU7_ANOCA)

HSP 1 Score: 77.4 bits (189), Expect = 1.360e-11
Identity = 54/134 (40.30%), Postives = 73/134 (54.48%), Query Frame = 0
Query:   79 EVWSCGRNDLGQGVRPDSNDQNSLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRGQLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANEFGQLGLGNRTQQ 212
            EV++ G N+ GQ      +  N   P  RV S  C   + A N   I+ G   S AV E G ++V G N  GQLGLG+   +     +  L+  RV +VACG+ HT+VLT +G +   GAN +GQLG GNR+ Q
Sbjct:  158 EVYTWGYNNSGQ--VGSGSTANQAIPR-RVTS--CLQNKIAVN---IACGQMCSMAVVENGEVYVWGYNGNGQLGLGNSGNQPTPCRIAALQGIRVQRVACGYAHTLVLTDEGQMYAWGANSYGQLGTGNRSNQ 283          
The following BLAST results are available for this feature:
BLAST of Gcaud1885.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IKE7_9FLOR6.800e-21577.90X-linked retinitis pigmentosa GTPase regulator n=1... [more]
A0A194SB85_RHOGW2.860e-1336.02Uncharacterized protein n=1 Tax=Rhodotorula gramin... [more]
A0A4U1EJW3_MONMO4.750e-1243.96Uncharacterized protein n=1 Tax=Monodon monoceros ... [more]
UPI001C8AA6014.940e-1238.52secretion-regulating guanine nucleotide exchange f... [more]
A0A7K8X3E2_9PICI8.950e-1240.30RCBT2 protein (Fragment) n=7 Tax=Archelosauria Tax... [more]
UPI00112BC9B01.010e-1137.31RCC1 and BTB domain-containing protein 2 isoform X... [more]
A0A1W0A7F7_9STRA1.020e-1142.73Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A482SSS9_9ARCH1.080e-1139.06Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7J8DZ43_ROUAE1.260e-1138.81RCC1 and BTB domain containing protein 2 n=1 Tax=R... [more]
G1KBU7_ANOCA1.360e-1140.30BTB domain-containing protein n=6 Tax=Iguania TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 80..96
score: 42.16
coord: 193..207
score: 38.89
coord: 177..193
score: 43.14
coord: 365..386
score: 31.06
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 177..187
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 191..239
score: 11.287999
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 139..190
score: 11.750299
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 238..290
score: 10.886
NoneNo IPR availablePFAMPF13540RCC1_2coord: 354..382
e-value: 9.7E-6
score: 25.2
coord: 174..203
e-value: 7.5E-7
score: 28.8
coord: 226..252
e-value: 3.6E-8
score: 33.0
NoneNo IPR availablePANTHERPTHR45982FAMILY NOT NAMEDcoord: 79..432
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 305..436
e-value: 1.7E-10
score: 42.4
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IIGENE3D2.130.10.30coord: 33..304
e-value: 5.5E-50
score: 172.3
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 78..333
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 312..434

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_238_length_34707_cov_4.869829contigNODE_238_length_34707_cov_4.869829:28178..29500 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1885.t1Gcaud1885.t1Gracilaria caudata M_176_S67 malemRNANODE_238_length_34707_cov_4.869829 28178..29500 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1885.t1 ID=Gcaud1885.t1|Name=Gcaud1885.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=441bp
MLCCCDLTAGDLAALKSAALMENVQSLAYATEVAAAALVYAHPNGRALVD
NKLSSETWISLLRYLQRLDGAAAPSGRTEVWSCGRNDLGQGVRPDSNDQN
SLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRG
QLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANE
FGQLGLGNRTQQERFSKLDLLPARMIAAGNAHTVVLLEDGTAWGTGDNSR
GQLGGRRGGRRDKFAPIGCFGRRVVRIACGSDTTMLLTVDNMVLVTGKRH
GGLSVIGGLGMSRVTHLSVGEGFAVASTDESEVAVSNHRKRFHVTDELLH
ISAASVSAGLSHYAITTDDGCAFAMGTNTFGQIAAGEMGLTIEGSQNARV
IRPHRVSLSRVQIPKGYRALRAAAGMFHTLYLLEREPPCT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR009091RCC1/BLIP-II