Gcaud1885.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1885.t1
Unique Name	Gcaud1885.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	441

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_238_length_34707_cov_4.869829	contig	NODE_238_length_34707_cov_4.869829:28178..29500 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7918.ENSLOCP00000009611
Preferred name	RPGR
PFAMs	RCC1
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K19607
GOs	GO:0001654,GO:0001750,GO:0001754,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007399,GO:0007423,GO:0007600,GO:0007601,GO:0008104,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009653,GO:0009887,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0022008,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0031503,GO:0031514,GO:0032391,GO:0032501,GO:0032502,GO:0033036,GO:0034613,GO:0035869,GO:0036064,GO:0036126,GO:0042073,GO:0042461,GO:0042462,GO:0042886,GO:0042995,GO:0043005,GO:0043010,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048592,GO:0048593,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050877,GO:0050896,GO:0050953,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060041,GO:0060042,GO:0060271,GO:0070727,GO:0070925,GO:0071214,GO:0071478,GO:0071482,GO:0071702,GO:0071705,GO:0071840,GO:0090596,GO:0097223,GO:0097458,GO:0097729,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0104004,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Evalue	4.19e-12
EggNOG OGs	COG5184@1\|root,KOG1426@2759\|Eukaryota,39QZ0@33154\|Opisthokonta,3BAVI@33208\|Metazoa,3CYC7@33213\|Bilateria,4839T@7711\|Chordata,4906U@7742\|Vertebrata,49VV5@7898\|Actinopterygii
Description	retinitis pigmentosa GTPase
COG category	DZ
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1885	Gcaud1885	Gracilaria caudata M_176_S67 male	gene	NODE_238_length_34707_cov_4.869829 28178..29500 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1885.t1.stop1	Gcaud1885.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_238_length_34707_cov_4.869829 28178..28180 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1885.t1.CDS1	Gcaud1885.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_238_length_34707_cov_4.869829 28178..29500 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1885.t1.exon1	Gcaud1885.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_238_length_34707_cov_4.869829 28178..29500 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1885.t1.start1	Gcaud1885.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_238_length_34707_cov_4.869829 29498..29500 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1885.t1	Gcaud1885.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_238_length_34707_cov_4.869829 28178..29500 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_238_length_34707_cov_4.869829:28178..29500-
coding sequence from alignment at NODE_238_length_34707_cov_4.869829:28178..29500-

mRNA sequence

>Gcaud1885.t1 ID=Gcaud1885.t1|Name=Gcaud1885.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=441bp
MLCCCDLTAGDLAALKSAALMENVQSLAYATEVAAAALVYAHPNGRALVD
NKLSSETWISLLRYLQRLDGAAAPSGRTEVWSCGRNDLGQGVRPDSNDQN
SLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRG
QLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANE
FGQLGLGNRTQQERFSKLDLLPARMIAAGNAHTVVLLEDGTAWGTGDNSR
GQLGGRRGGRRDKFAPIGCFGRRVVRIACGSDTTMLLTVDNMVLVTGKRH
GGLSVIGGLGMSRVTHLSVGEGFAVASTDESEVAVSNHRKRFHVTDELLH
ISAASVSAGLSHYAITTDDGCAFAMGTNTFGQIAAGEMGLTIEGSQNARV
IRPHRVSLSRVQIPKGYRALRAAAGMFHTLYLLEREPPCT*

spliced messenger RNA

>Gcaud1885.t1 ID=Gcaud1885.t1|Name=Gcaud1885.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:28178..29500- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTATGTTGTTGTGACTTAACTGCGGGAGATCTTGCCGCTTTGAAAAG
TGCTGCGTTAATGGAGAATGTACAATCTCTAGCATATGCTACAGAGGTAG
CTGCGGCGGCTTTGGTTTATGCGCATCCGAACGGTAGGGCATTGGTTGAT
AACAAACTTTCTTCAGAAACTTGGATCTCATTGCTACGCTATCTGCAACG
ATTAGATGGAGCCGCCGCGCCCAGCGGTCGTACTGAAGTATGGAGTTGCG
GCCGAAACGATCTGGGACAGGGAGTGAGACCCGACAGCAATGATCAGAAC
TCTCTTACCCCCACGTACAGAGTGGCTTCTGAAGCATGTGAGTTTGAACG
ACCAGCTGCCAACCTAATCATGATTAGTGCTGGATTTCATCACTCTGCAG
CAGTTTCTGAACTTGGAACGCTACACGTCGCAGGTGCTAATCACAGAGGG
CAACTCGGGCTAGGCGACCTATCCCTTCGTTCTGCATGGACGCCAGTTGT
GGATCTCAAGTGGGCAAGAGTTGCGCAGGTTGCGTGCGGATTCGGACATA
CGGTGGTGCTTACTGGTCAGGGACTCGTTCTCGTCACAGGAGCGAATGAA
TTCGGACAGCTGGGGCTTGGCAACCGTACGCAACAAGAACGATTTTCAAA
GCTTGATCTTTTACCGGCGCGTATGATCGCAGCCGGAAATGCTCACACGG
TTGTGTTGCTGGAGGACGGCACTGCGTGGGGAACGGGAGATAACTCAAGA
GGACAGCTTGGAGGTAGACGAGGTGGGCGACGTGACAAATTTGCACCCAT
TGGTTGTTTTGGTAGAAGGGTTGTACGGATTGCTTGTGGTTCTGATACCA
CTATGTTACTGACCGTCGATAATATGGTCTTGGTTACTGGCAAGCGTCAT
GGCGGGCTAAGCGTCATCGGCGGGTTGGGAATGAGTCGCGTGACACATCT
GTCGGTTGGGGAAGGATTTGCCGTTGCCAGCACAGATGAGAGCGAAGTCG
CTGTAAGTAATCATCGAAAACGATTTCATGTCACAGATGAATTGCTTCAC
ATAAGTGCTGCATCGGTCAGCGCGGGTCTTTCTCATTATGCTATCACCAC
TGACGACGGGTGCGCTTTTGCGATGGGGACAAACACGTTCGGGCAAATTG
CTGCTGGAGAAATGGGACTCACCATCGAGGGGAGTCAGAATGCTCGTGTC
ATTAGGCCTCATCGGGTTTCTTTGTCACGAGTTCAAATACCGAAGGGATA
CAGAGCGTTGCGTGCGGCAGCAGGAATGTTCCATACACTGTATCTTCTCG
AAAGAGAACCACCATGTACATAA

protein sequence of Gcaud1885.t1

>Gcaud1885.t1 ID=Gcaud1885.t1|Name=Gcaud1885.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=441bp
MLCCCDLTAGDLAALKSAALMENVQSLAYATEVAAAALVYAHPNGRALVD
NKLSSETWISLLRYLQRLDGAAAPSGRTEVWSCGRNDLGQGVRPDSNDQN
SLTPTYRVASEACEFERPAANLIMISAGFHHSAAVSELGTLHVAGANHRG
QLGLGDLSLRSAWTPVVDLKWARVAQVACGFGHTVVLTGQGLVLVTGANE
FGQLGLGNRTQQERFSKLDLLPARMIAAGNAHTVVLLEDGTAWGTGDNSR
GQLGGRRGGRRDKFAPIGCFGRRVVRIACGSDTTMLLTVDNMVLVTGKRH
GGLSVIGGLGMSRVTHLSVGEGFAVASTDESEVAVSNHRKRFHVTDELLH
ISAASVSAGLSHYAITTDDGCAFAMGTNTFGQIAAGEMGLTIEGSQNARV
IRPHRVSLSRVQIPKGYRALRAAAGMFHTLYLLEREPPCT*

mRNA from alignment at NODE_238_length_34707_cov_4.869829:28178..29500-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1885.t1 ID=Gcaud1885.t1|Name=Gcaud1885.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:28178..29500- (Gracilaria caudata M_176_S67 male)
ATGTTATGTTGTTGTGACTTAACTGCGGGAGATCTTGCCGCTTTGAAAAG
TGCTGCGTTAATGGAGAATGTACAATCTCTAGCATATGCTACAGAGGTAG
CTGCGGCGGCTTTGGTTTATGCGCATCCGAACGGTAGGGCATTGGTTGAT
AACAAACTTTCTTCAGAAACTTGGATCTCATTGCTACGCTATCTGCAACG
ATTAGATGGAGCCGCCGCGCCCAGCGGTCGTACTGAAGTATGGAGTTGCG
GCCGAAACGATCTGGGACAGGGAGTGAGACCCGACAGCAATGATCAGAAC
TCTCTTACCCCCACGTACAGAGTGGCTTCTGAAGCATGTGAGTTTGAACG
ACCAGCTGCCAACCTAATCATGATTAGTGCTGGATTTCATCACTCTGCAG
CAGTTTCTGAACTTGGAACGCTACACGTCGCAGGTGCTAATCACAGAGGG
CAACTCGGGCTAGGCGACCTATCCCTTCGTTCTGCATGGACGCCAGTTGT
GGATCTCAAGTGGGCAAGAGTTGCGCAGGTTGCGTGCGGATTCGGACATA
CGGTGGTGCTTACTGGTCAGGGACTCGTTCTCGTCACAGGAGCGAATGAA
TTCGGACAGCTGGGGCTTGGCAACCGTACGCAACAAGAACGATTTTCAAA
GCTTGATCTTTTACCGGCGCGTATGATCGCAGCCGGAAATGCTCACACGG
TTGTGTTGCTGGAGGACGGCACTGCGTGGGGAACGGGAGATAACTCAAGA
GGACAGCTTGGAGGTAGACGAGGTGGGCGACGTGACAAATTTGCACCCAT
TGGTTGTTTTGGTAGAAGGGTTGTACGGATTGCTTGTGGTTCTGATACCA
CTATGTTACTGACCGTCGATAATATGGTCTTGGTTACTGGCAAGCGTCAT
GGCGGGCTAAGCGTCATCGGCGGGTTGGGAATGAGTCGCGTGACACATCT
GTCGGTTGGGGAAGGATTTGCCGTTGCCAGCACAGATGAGAGCGAAGTCG
CTGTAAGTAATCATCGAAAACGATTTCATGTCACAGATGAATTGCTTCAC
ATAAGTGCTGCATCGGTCAGCGCGGGTCTTTCTCATTATGCTATCACCAC
TGACGACGGGTGCGCTTTTGCGATGGGGACAAACACGTTCGGGCAAATTG
CTGCTGGAGAAATGGGACTCACCATCGAGGGGAGTCAGAATGCTCGTGTC
ATTAGGCCTCATCGGGTTTCTTTGTCACGAGTTCAAATACCGAAGGGATA
CAGAGCGTTGCGTGCGGCAGCAGGAATGTTCCATACACTGTATCTTCTCG
AAAGAGAACCACCATGTACATAA

Coding sequence (CDS) from alignment at NODE_238_length_34707_cov_4.869829:28178..29500-

>Gcaud1885.t1 ID=Gcaud1885.t1|Name=Gcaud1885.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1323bp|location=Sequence derived from alignment at NODE_238_length_34707_cov_4.869829:28178..29500- (Gracilaria caudata M_176_S67 male)
ATGTTATGTTGTTGTGACTTAACTGCGGGAGATCTTGCCGCTTTGAAAAG
TGCTGCGTTAATGGAGAATGTACAATCTCTAGCATATGCTACAGAGGTAG
CTGCGGCGGCTTTGGTTTATGCGCATCCGAACGGTAGGGCATTGGTTGAT
AACAAACTTTCTTCAGAAACTTGGATCTCATTGCTACGCTATCTGCAACG
ATTAGATGGAGCCGCCGCGCCCAGCGGTCGTACTGAAGTATGGAGTTGCG
GCCGAAACGATCTGGGACAGGGAGTGAGACCCGACAGCAATGATCAGAAC
TCTCTTACCCCCACGTACAGAGTGGCTTCTGAAGCATGTGAGTTTGAACG
ACCAGCTGCCAACCTAATCATGATTAGTGCTGGATTTCATCACTCTGCAG
CAGTTTCTGAACTTGGAACGCTACACGTCGCAGGTGCTAATCACAGAGGG
CAACTCGGGCTAGGCGACCTATCCCTTCGTTCTGCATGGACGCCAGTTGT
GGATCTCAAGTGGGCAAGAGTTGCGCAGGTTGCGTGCGGATTCGGACATA
CGGTGGTGCTTACTGGTCAGGGACTCGTTCTCGTCACAGGAGCGAATGAA
TTCGGACAGCTGGGGCTTGGCAACCGTACGCAACAAGAACGATTTTCAAA
GCTTGATCTTTTACCGGCGCGTATGATCGCAGCCGGAAATGCTCACACGG
TTGTGTTGCTGGAGGACGGCACTGCGTGGGGAACGGGAGATAACTCAAGA
GGACAGCTTGGAGGTAGACGAGGTGGGCGACGTGACAAATTTGCACCCAT
TGGTTGTTTTGGTAGAAGGGTTGTACGGATTGCTTGTGGTTCTGATACCA
CTATGTTACTGACCGTCGATAATATGGTCTTGGTTACTGGCAAGCGTCAT
GGCGGGCTAAGCGTCATCGGCGGGTTGGGAATGAGTCGCGTGACACATCT
GTCGGTTGGGGAAGGATTTGCCGTTGCCAGCACAGATGAGAGCGAAGTCG
CTGTAAGTAATCATCGAAAACGATTTCATGTCACAGATGAATTGCTTCAC
ATAAGTGCTGCATCGGTCAGCGCGGGTCTTTCTCATTATGCTATCACCAC
TGACGACGGGTGCGCTTTTGCGATGGGGACAAACACGTTCGGGCAAATTG
CTGCTGGAGAAATGGGACTCACCATCGAGGGGAGTCAGAATGCTCGTGTC
ATTAGGCCTCATCGGGTTTCTTTGTCACGAGTTCAAATACCGAAGGGATA
CAGAGCGTTGCGTGCGGCAGCAGGAATGTTCCATACACTGTATCTTCTCG
AAAGAGAACCACCATGTACATAA