Gcaud3534.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3534.t1
Unique NameGcaud3534.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_237_length_34827_cov_4.750864contigNODE_237_length_34827_cov_4.750864:4022..5260 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707907.1
PFAMsRCC1
Max annot lvl2759|Eukaryota
Evalue2.77e-49
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Descriptionguanyl-nucleotide exchange factor activity
COG categoryDZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3534Gcaud3534Gracilaria caudata M_176_S67 malegeneNODE_237_length_34827_cov_4.750864 4022..5260 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3534.t1.stop1Gcaud3534.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_237_length_34827_cov_4.750864 4022..4024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3534.t1.CDS1Gcaud3534.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_237_length_34827_cov_4.750864 4022..5260 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3534.t1.exon1Gcaud3534.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_237_length_34827_cov_4.750864 4022..5260 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3534.t1.start1Gcaud3534.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_237_length_34827_cov_4.750864 5258..5260 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3534.t1Gcaud3534.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_237_length_34827_cov_4.750864 4022..5260 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3534.t1 ID=Gcaud3534.t1|Name=Gcaud3534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=413bp
MYNRLKALLCLGFASRSFASLAEGDFQNDDRSWLQWILNKDKDREPDTGN
VKKKVLSERPGRVMVWGGHYGKVPRCVAGLKSNMTKVAVGNGFGGAISSD
NEVYGFYNDRGRDVVQRISMNGKSKHVEVMESNREIVLLDSKGRVHSSIL
ESGGFEPAKRLEGALKRMKVQHLKCGKEHCAAIADNGHVVTWGNTNKSGQ
LGTPESTVEEQNNPRIPRLVKFPGDFPVYDVACGDRHTVFLDRNGSLYGV
GCDRWAQLGVSAEPWLSNHESFTRVVQKASLMEGLAGAEVACGGQHSVLL
IKDGTVFSFGFNQWGQLGHHNYSSFGPPSPIAQYRIRAISICAGENHTCL
VTDQGELMCIGSNEHGQLGNGTLQSSMKWKKVKTEKRVIKPFYLYSSGCT
TAVVVEKSEHDR*
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spliced messenger RNA

>Gcaud3534.t1 ID=Gcaud3534.t1|Name=Gcaud3534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:4022..5260- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACAATAGGCTTAAAGCCCTACTATGCCTCGGATTCGCATCGAGGTC
TTTTGCTAGTCTTGCTGAGGGCGACTTCCAAAACGATGATAGGTCGTGGC
TACAATGGATTCTCAATAAGGATAAGGATCGCGAACCGGATACAGGGAAT
GTCAAAAAGAAAGTGCTGTCTGAAAGGCCAGGGAGGGTAATGGTCTGGGG
TGGGCATTATGGCAAGGTACCTCGTTGTGTAGCTGGATTGAAATCTAATA
TGACAAAGGTGGCAGTAGGGAATGGTTTCGGTGGAGCTATCTCAAGTGAT
AATGAAGTGTATGGATTTTACAACGACCGAGGTAGGGATGTCGTGCAACG
TATTTCGATGAACGGAAAATCGAAGCATGTCGAAGTAATGGAATCTAATC
GTGAAATAGTGTTGTTAGATTCTAAAGGTCGTGTTCATTCTTCGATACTG
GAGAGTGGAGGTTTCGAACCTGCAAAGAGACTCGAAGGGGCTCTGAAGCG
AATGAAAGTCCAGCATTTGAAATGTGGGAAAGAACATTGTGCTGCAATTG
CTGACAATGGACATGTTGTAACTTGGGGCAATACCAATAAATCAGGTCAG
TTAGGGACTCCGGAATCGACAGTGGAAGAGCAGAACAACCCTCGTATACC
TCGTTTGGTGAAGTTTCCCGGCGATTTTCCAGTATACGACGTTGCGTGCG
GTGATAGGCACACAGTGTTCCTGGACAGAAACGGAAGTCTTTATGGCGTA
GGGTGTGACCGATGGGCACAATTGGGAGTGTCTGCAGAACCATGGTTGAG
TAATCACGAGAGCTTCACTCGCGTAGTTCAAAAGGCAAGCCTCATGGAAG
GGCTCGCAGGTGCTGAAGTTGCATGCGGTGGTCAACACAGTGTCTTGCTC
ATCAAGGATGGTACGGTGTTTTCGTTTGGATTCAACCAATGGGGTCAGCT
TGGTCATCACAATTATTCTTCGTTTGGGCCTCCCTCTCCAATTGCGCAGT
ATCGTATTAGAGCGATATCAATATGTGCAGGAGAAAACCATACCTGTCTC
GTCACTGATCAAGGAGAACTCATGTGCATTGGAAGTAATGAGCATGGACA
ACTTGGAAACGGAACCTTGCAGTCGTCTATGAAATGGAAAAAGGTCAAAA
CTGAGAAGAGAGTGATAAAACCGTTCTATCTATATTCTTCAGGATGTACA
ACAGCGGTTGTTGTCGAGAAATCTGAGCATGACCGCTAG
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protein sequence of Gcaud3534.t1

>Gcaud3534.t1 ID=Gcaud3534.t1|Name=Gcaud3534.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=413bp
MYNRLKALLCLGFASRSFASLAEGDFQNDDRSWLQWILNKDKDREPDTGN
VKKKVLSERPGRVMVWGGHYGKVPRCVAGLKSNMTKVAVGNGFGGAISSD
NEVYGFYNDRGRDVVQRISMNGKSKHVEVMESNREIVLLDSKGRVHSSIL
ESGGFEPAKRLEGALKRMKVQHLKCGKEHCAAIADNGHVVTWGNTNKSGQ
LGTPESTVEEQNNPRIPRLVKFPGDFPVYDVACGDRHTVFLDRNGSLYGV
GCDRWAQLGVSAEPWLSNHESFTRVVQKASLMEGLAGAEVACGGQHSVLL
IKDGTVFSFGFNQWGQLGHHNYSSFGPPSPIAQYRIRAISICAGENHTCL
VTDQGELMCIGSNEHGQLGNGTLQSSMKWKKVKTEKRVIKPFYLYSSGCT
TAVVVEKSEHDR*
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mRNA from alignment at NODE_237_length_34827_cov_4.750864:4022..5260-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3534.t1 ID=Gcaud3534.t1|Name=Gcaud3534.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1239bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:4022..5260- (Gracilaria caudata M_176_S67 male)
ATGTACAATAGGCTTAAAGCCCTACTATGCCTCGGATTCGCATCGAGGTC
TTTTGCTAGTCTTGCTGAGGGCGACTTCCAAAACGATGATAGGTCGTGGC
TACAATGGATTCTCAATAAGGATAAGGATCGCGAACCGGATACAGGGAAT
GTCAAAAAGAAAGTGCTGTCTGAAAGGCCAGGGAGGGTAATGGTCTGGGG
TGGGCATTATGGCAAGGTACCTCGTTGTGTAGCTGGATTGAAATCTAATA
TGACAAAGGTGGCAGTAGGGAATGGTTTCGGTGGAGCTATCTCAAGTGAT
AATGAAGTGTATGGATTTTACAACGACCGAGGTAGGGATGTCGTGCAACG
TATTTCGATGAACGGAAAATCGAAGCATGTCGAAGTAATGGAATCTAATC
GTGAAATAGTGTTGTTAGATTCTAAAGGTCGTGTTCATTCTTCGATACTG
GAGAGTGGAGGTTTCGAACCTGCAAAGAGACTCGAAGGGGCTCTGAAGCG
AATGAAAGTCCAGCATTTGAAATGTGGGAAAGAACATTGTGCTGCAATTG
CTGACAATGGACATGTTGTAACTTGGGGCAATACCAATAAATCAGGTCAG
TTAGGGACTCCGGAATCGACAGTGGAAGAGCAGAACAACCCTCGTATACC
TCGTTTGGTGAAGTTTCCCGGCGATTTTCCAGTATACGACGTTGCGTGCG
GTGATAGGCACACAGTGTTCCTGGACAGAAACGGAAGTCTTTATGGCGTA
GGGTGTGACCGATGGGCACAATTGGGAGTGTCTGCAGAACCATGGTTGAG
TAATCACGAGAGCTTCACTCGCGTAGTTCAAAAGGCAAGCCTCATGGAAG
GGCTCGCAGGTGCTGAAGTTGCATGCGGTGGTCAACACAGTGTCTTGCTC
ATCAAGGATGGTACGGTGTTTTCGTTTGGATTCAACCAATGGGGTCAGCT
TGGTCATCACAATTATTCTTCGTTTGGGCCTCCCTCTCCAATTGCGCAGT
ATCGTATTAGAGCGATATCAATATGTGCAGGAGAAAACCATACCTGTCTC
GTCACTGATCAAGGAGAACTCATGTGCATTGGAAGTAATGAGCATGGACA
ACTTGGAAACGGAACCTTGCAGTCGTCTATGAAATGGAAAAAGGTCAAAA
CTGAGAAGAGAGTGATAAAACCGTTCTATCTATATTCTTCAGGATGTACA
ACAGCGGTTGTTGTCGAGAAATCTGAGCATGACCGCTAG
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Coding sequence (CDS) from alignment at NODE_237_length_34827_cov_4.750864:4022..5260-

>Gcaud3534.t1 ID=Gcaud3534.t1|Name=Gcaud3534.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1239bp|location=Sequence derived from alignment at NODE_237_length_34827_cov_4.750864:4022..5260- (Gracilaria caudata M_176_S67 male)
ATGTACAATAGGCTTAAAGCCCTACTATGCCTCGGATTCGCATCGAGGTC
TTTTGCTAGTCTTGCTGAGGGCGACTTCCAAAACGATGATAGGTCGTGGC
TACAATGGATTCTCAATAAGGATAAGGATCGCGAACCGGATACAGGGAAT
GTCAAAAAGAAAGTGCTGTCTGAAAGGCCAGGGAGGGTAATGGTCTGGGG
TGGGCATTATGGCAAGGTACCTCGTTGTGTAGCTGGATTGAAATCTAATA
TGACAAAGGTGGCAGTAGGGAATGGTTTCGGTGGAGCTATCTCAAGTGAT
AATGAAGTGTATGGATTTTACAACGACCGAGGTAGGGATGTCGTGCAACG
TATTTCGATGAACGGAAAATCGAAGCATGTCGAAGTAATGGAATCTAATC
GTGAAATAGTGTTGTTAGATTCTAAAGGTCGTGTTCATTCTTCGATACTG
GAGAGTGGAGGTTTCGAACCTGCAAAGAGACTCGAAGGGGCTCTGAAGCG
AATGAAAGTCCAGCATTTGAAATGTGGGAAAGAACATTGTGCTGCAATTG
CTGACAATGGACATGTTGTAACTTGGGGCAATACCAATAAATCAGGTCAG
TTAGGGACTCCGGAATCGACAGTGGAAGAGCAGAACAACCCTCGTATACC
TCGTTTGGTGAAGTTTCCCGGCGATTTTCCAGTATACGACGTTGCGTGCG
GTGATAGGCACACAGTGTTCCTGGACAGAAACGGAAGTCTTTATGGCGTA
GGGTGTGACCGATGGGCACAATTGGGAGTGTCTGCAGAACCATGGTTGAG
TAATCACGAGAGCTTCACTCGCGTAGTTCAAAAGGCAAGCCTCATGGAAG
GGCTCGCAGGTGCTGAAGTTGCATGCGGTGGTCAACACAGTGTCTTGCTC
ATCAAGGATGGTACGGTGTTTTCGTTTGGATTCAACCAATGGGGTCAGCT
TGGTCATCACAATTATTCTTCGTTTGGGCCTCCCTCTCCAATTGCGCAGT
ATCGTATTAGAGCGATATCAATATGTGCAGGAGAAAACCATACCTGTCTC
GTCACTGATCAAGGAGAACTCATGTGCATTGGAAGTAATGAGCATGGACA
ACTTGGAAACGGAACCTTGCAGTCGTCTATGAAATGGAAAAAGGTCAAAA
CTGAGAAGAGAGTGATAAAACCGTTCTATCTATATTCTTCAGGATGTACA
ACAGCGGTTGTTGTCGAGAAATCTGAGCATGACCGCTAG
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