Gcaud2056.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2056.t1
Unique Name	Gcaud2056.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	216

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2346_length_6019_cov_4.279521	contig	NODE_2346_length_6019_cov_4.279521:2736..5832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1415779.JOMH01000001_gene2153
PFAMs	CitMHS,TrkA_C
Max annot lvl	135614\|Xanthomonadales
Evalue	1.25e-09
EggNOG OGs	COG0471@1\|root,COG0471@2\|Bacteria,1MU0K@1224\|Proteobacteria,1RMI1@1236\|Gammaproteobacteria,1X4JA@135614\|Xanthomonadales
Description	TrkA-C domain
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2056	Gcaud2056	Gracilaria caudata M_176_S67 male	gene	NODE_2346_length_6019_cov_4.279521 2736..5832 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2056.t1	Gcaud2056.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2346_length_6019_cov_4.279521 2736..5832 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2056.t1.start1	Gcaud2056.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2346_length_6019_cov_4.279521 2736..2738 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2056.t1.CDS1	Gcaud2056.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2346_length_6019_cov_4.279521 2736..3052 +
Gcaud2056.t1.CDS2	Gcaud2056.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2346_length_6019_cov_4.279521 5502..5832 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2056.t1.exon1	Gcaud2056.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2346_length_6019_cov_4.279521 2736..3052 +
Gcaud2056.t1.exon2	Gcaud2056.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2346_length_6019_cov_4.279521 5502..5832 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2056.t1.intron1	Gcaud2056.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2346_length_6019_cov_4.279521 3053..5501 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2056.t1.stop1	Gcaud2056.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2346_length_6019_cov_4.279521 5830..5832 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2346_length_6019_cov_4.279521:2736..5832+
coding sequence from alignment at NODE_2346_length_6019_cov_4.279521:2736..5832+

mRNA sequence

>Gcaud2056.t1 ID=Gcaud2056.t1|Name=Gcaud2056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=216bp
MPLNDAAVLGGTTFLTGTSTNLVVNGLAIKTRIFGNVDGNKDGVGMGLPV
FGSTPVGALMLVTGIITMVICSRCLLPDRGPTGVDSIIRSPRDYSVALLC
NNDRPLGHLFSRVRETVHSWGNILVECLPNMQWTAQEIKDVIAFVNIHAI
EQLYKSCKVAARVVGALARCLDKQKVEHIILPRALLLFDNTEIEVRGMVV
ESQAQVGAALPIRVT*

spliced messenger RNA

>Gcaud2056.t1 ID=Gcaud2056.t1|Name=Gcaud2056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=648bp|location=Sequence derived from alignment at NODE_2346_length_6019_cov_4.279521:2736..5832+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACTGAACGATGCCGCCGTTCTTGGGGGCACCACGTTTTTGACTGG
TACCAGTACCAATCTTGTCGTCAATGGTCTCGCCATCAAGACAAGGATCT
TTGGAAACGTTGACGGCAACAAGGATGGTGTTGGAATGGGCTTGCCCGTC
TTTGGTAGTACTCCAGTTGGTGCGCTCATGCTCGTTACAGGCATCATCAC
CATGGTAATCTGCTCGCGCTGCTTGTTGCCCGATAGAGGTCCAACTGGTG
TCGATTCAATTATTCGCAGTCCCAGAGATTATTCTGTTGCGTTGCTCTGC
AACAACGATCGCCCATTAGGGCATCTCTTCTCCCGAGTACGAGAAACTGT
ACACTCTTGGGGGAACATCCTGGTCGAATGTTTACCTAACATGCAATGGA
CTGCCCAGGAGATCAAGGATGTCATTGCCTTTGTGAACATTCACGCCATC
GAGCAGTTGTACAAGTCGTGCAAGGTTGCTGCCCGTGTTGTAGGTGCATT
GGCCCGGTGTCTCGACAAGCAAAAGGTTGAGCATATCATACTTCCTCGAG
CGCTGCTCCTCTTTGATAATACCGAAATTGAAGTGCGCGGTATGGTCGTG
GAGAGTCAGGCGCAGGTTGGTGCTGCTTTGCCCATTCGCGTAACGTAG

protein sequence of Gcaud2056.t1

>Gcaud2056.t1 ID=Gcaud2056.t1|Name=Gcaud2056.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=216bp
MPLNDAAVLGGTTFLTGTSTNLVVNGLAIKTRIFGNVDGNKDGVGMGLPV
FGSTPVGALMLVTGIITMVICSRCLLPDRGPTGVDSIIRSPRDYSVALLC
NNDRPLGHLFSRVRETVHSWGNILVECLPNMQWTAQEIKDVIAFVNIHAI
EQLYKSCKVAARVVGALARCLDKQKVEHIILPRALLLFDNTEIEVRGMVV
ESQAQVGAALPIRVT*

mRNA from alignment at NODE_2346_length_6019_cov_4.279521:2736..5832+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2056.t1 ID=Gcaud2056.t1|Name=Gcaud2056.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3097bp|location=Sequence derived from alignment at NODE_2346_length_6019_cov_4.279521:2736..5832+ (Gracilaria caudata M_176_S67 male)
ATGCCACTGAACGATGCCGCCGTTCTTGGGGGCACCACGTTTTTGACTGG
TACCAGTACCAATCTTGTCGTCAATGGTCTCGCCATCAAGACAAGGATCT
TTGGAAACGTTGACGGCAACAAGGATGGTGTTGGAATGGGCTTGCCCGTC
TTTGGTAGTACTCCAGTTGGTGCGCTCATGCTCGTTACAGGCATCATCAC
CATGGTAATCTGCTCGCGCTGCTTGTTGCCCGATAGAGGTCCAACTGGTG
TCGATTCAATTATTCGCAGTCCCAGAGATTATTCTGTTGCGTTGCTCTGC
AACAACGATCGCCCATTGTGAGTGACACCGTAAAGGAGGCTGGTTTGCGT
CATCTGCCAGGCCTTTACTTGGTCAAAGTTACCCGTGCAGACTGTTAGCT
CATCCCGACTGTGGCCCCAGACATCAAGATTGAATCGGGTGGCACCCTAC
TCTCTGCGGAAGTTATGGAACGTTCGAAGAGCTGTATCACATCCCTGTAC
TTGTCCCCGCTACGAGGATAATCACAAAAGATGGGGATCGAGCGTCATCA
TTTCAGATTTTTCGAGCTCGTTATCGCGTCATCGTCCATGCTCGAAGGGA
ACACTGCGACGGGGGAGCCCGAGACGTGAAGAACGCGGGGATGGGGAAAC
TGGCTGTAACCAAGAGAGCAGTGGAACGGAGGGTGGGCGTAGAGGCTGGG
AGCAGAGGTATGGCGTGGTGGGAGGCAGGAGGGGTATGCCGTGCTGTGGC
CACGATATGTTTCCCCAAAGTCCACGGGGAGAAACCTCGAACGTGCTGAA
CGACATATTGCAGCTAGAATGATGACCATAATGTGCCGTCATGTAACGTG
ACGGTCATTATGTGATCTTAATATGGATAGTGACAAAGGATGACCGCTGA
TGTTGccaagggtgccaaattgcgtccatatcccgaacggtaaatatatt
ctgacagaaagttggccaaattctggggagtgataattcatcataaattc
gggatcatgcgacgcggcagtgcgctggcattatttagatgtgcaaaaaa
cattttggatttaattgaggccatgttttggcaatattttgccgagaaac
actgttcataaggattgttcactgggtaaaGGCTCAGTTGCACAATAGCG
CTTGTCCGTGGAGGATGTAATGTGAGACGCGGTATATCTTGGTACGTATG
GAAAAGAAGATTTCGTCTTGTGCAGCTTGAACTGTTAGGGCGTGGAGATA
CACTACTTGCCGAGATGGAAACGGTAtccctggaagaaaaaatattatgc
gactggcgaacttataccctcgaaaagttgacaaatggaggtctgtaggc
gtacatttgtttacatgagtggcgtacaatttcgagcttgtccgccattt
gaacgccattcgtaaccaaaagtaagtcattggtagttttctttactaag
ttacacaactggcgtacgaatTTAGTTCATGTTTTGTACGCCATTTATGA
CAAGCACCACTACTGGCGTACTCATGGCTACGAATGGCGAACAAATAGCG
CAGAATCTTGAAATCGTACGCCAGTTGTCTGATCAAAGGCATGCCCCTAG
AACGCCATTGGTCAACTTTTCCAGGGTGTGGGTACGCCAGTCCCATCATA
TTTTTTCGTCTAGGGTATCTCATTCTTCCAAACCTGTCTGTACCTAGGTG
GAGCGCCGCCATTCGTCAAGTTATCAGCGAAGTAGTATTTTTGTTGTAAA
AAACCTCCTTTGGGTCTGAGGGCATACTGAAACAGTATGTTCTTGTGTAT
TCATTTGCGTACATGATGATTGTCACTAGCTATAGATATGAGTACGAGAA
ATCCCAATAGAGTACCACTCTTGTTACGATTTCGTCATTTTCGAGGCAGT
ATCTTGGCCACTCCAGCGCCGTAGAGTGAACGAGATAGGGGAAAACTTTA
GCGTACGGAAGAAAAGATATTGTCCACAAAATGTGCTTGAGTTGTATATC
TCCAGCGATAGTAGAAGTACTGTCAATAGTGTTTCCTGCACTACTACGGG
CCACTATTTGGCTCTTTTCTCGAAATCTATGTAGGCCACTGCCGCTCTGA
ATTCAGACCGAAACGGGGCAGCTTTGGCCACAGTCTGTCCTCTCCTCGGT
GTACATAGGCCTATAACGTCCGTCCTGTGATCTATGTGGGAACGCGACAC
GCGTACACGAAGAgcctaccatatgcccaccaatcggcaatctgaatgtg
gccatttttcggcaaacgattttgtactccacctggccgtatttcagcca
tttgttgtacatgtattggtttgatgcttgacacgccctattggcctttt
attggccgtatgtgggtcagatctgtgcccttcacattgctcacagggAA
AACCTGCCACTTTCGCCCATGAAATCTAGGGACCTATGCTGCTCAAAAGC
CGCAGGCTTCTGAGCCCGATGACCGTCTCATCGATATTGGTAATCTCGAG
GCAATATACAGCGTCCAAAGATGGCAGAGGTGCTTGTCTCGGGCGCCGAC
TACGAGCGCGAATTCATTCTCTTCGAACTGCAGCAGCTCCTGGACTACTG
TCTGGACGACACAATGAAAAGTCTCCTGCCGGTTCTTTGCGAACACCTGC
CTATGTGGAATATCGAGCTACAGATCAAGTCCGCCAAGCGTTTGTACGAC
GTTGTCGCCCTCAATTTGCTGCTAACATGATACCTGTGGCCTCGTTTGGC
GTTCTCCACCGAGCAGAGGGCATCTCTTCTCCCGAGTACGAGAAACTGTA
CACTCTTGGGGGAACATCCTGGTCGAATGTTTACCTAACATGCAATGGAC
TGCCCAGGAGATCAAGGATGTCATTGCCTTTGTGAACATTCACGCCATCG
AGCAGTTGTACAAGTCGTGCAAGGTTGCTGCCCGTGTTGTAGGTGCATTG
GCCCGGTGTCTCGACAAGCAAAAGGTTGAGCATATCATACTTCCTCGAGC
GCTGCTCCTCTTTGATAATACCGAAATTGAAGTGCGCGGTATGGTCGTGG
AGAGTCAGGCGCAGGTTGGTGCTGCTTTGCCCATTCGCGTAACGTAG

Coding sequence (CDS) from alignment at NODE_2346_length_6019_cov_4.279521:2736..5832+

>Gcaud2056.t1 ID=Gcaud2056.t1|Name=Gcaud2056.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=648bp|location=Sequence derived from alignment at NODE_2346_length_6019_cov_4.279521:2736..5832+ (Gracilaria caudata M_176_S67 male)
ATGCCACTGAACGATGCCGCCGTTCTTGGGGGCACCACGTTTTTGACTGG
TACCAGTACCAATCTTGTCGTCAATGGTCTCGCCATCAAGACAAGGATCT
TTGGAAACGTTGACGGCAACAAGGATGGTGTTGGAATGGGCTTGCCCGTC
TTTGGTAGTACTCCAGTTGGTGCGCTCATGCTCGTTACAGGCATCATCAC
CATGGTAATCTGCTCGCGCTGCTTGTTGCCCGATAGAGGTCCAACTGGTG
TCGATTCAATTATTCGCAGTCCCAGAGATTATTCTGTTGCGTTGCTCTGC
AACAACGATCGCCCATTAGGGCATCTCTTCTCCCGAGTACGAGAAACTGT
ACACTCTTGGGGGAACATCCTGGTCGAATGTTTACCTAACATGCAATGGA
CTGCCCAGGAGATCAAGGATGTCATTGCCTTTGTGAACATTCACGCCATC
GAGCAGTTGTACAAGTCGTGCAAGGTTGCTGCCCGTGTTGTAGGTGCATT
GGCCCGGTGTCTCGACAAGCAAAAGGTTGAGCATATCATACTTCCTCGAG
CGCTGCTCCTCTTTGATAATACCGAAATTGAAGTGCGCGGTATGGTCGTG
GAGAGTCAGGCGCAGGTTGGTGCTGCTTTGCCCATTCGCGTAACGTAG