Gcaud2277.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2277.t1
Unique Name	Gcaud2277.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	652

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2244_length_6318_cov_4.442749	contig	NODE_2244_length_6318_cov_4.442749:4269..6295 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2277	Gcaud2277	Gracilaria caudata M_176_S67 male	gene	NODE_2244_length_6318_cov_4.442749 4269..6295 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2277.t1	Gcaud2277.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2244_length_6318_cov_4.442749 4269..6295 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2277.t1.start1	Gcaud2277.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2244_length_6318_cov_4.442749 4269..4271 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2277.t1.CDS1	Gcaud2277.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2244_length_6318_cov_4.442749 4269..6205 +
Gcaud2277.t1.CDS2	Gcaud2277.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2244_length_6318_cov_4.442749 6277..6295 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2277.t1.exon1	Gcaud2277.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2244_length_6318_cov_4.442749 4269..6205 +
Gcaud2277.t1.exon2	Gcaud2277.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2244_length_6318_cov_4.442749 6277..6295 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2277.t1.intron1	Gcaud2277.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2244_length_6318_cov_4.442749 6206..6276 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2277.t1.stop1	Gcaud2277.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2244_length_6318_cov_4.442749 6293..6295 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2244_length_6318_cov_4.442749:4269..6295+
coding sequence from alignment at NODE_2244_length_6318_cov_4.442749:4269..6295+

mRNA sequence

>Gcaud2277.t1 ID=Gcaud2277.t1|Name=Gcaud2277.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=652bp
MVSISFIVMVLSFFFDAGTAALQHPSFFPPTLDSYRQLATIPPVGISVES
QSEVSFFLVNGESDELVVSFVFMPPSGSSPEEFVLSFGCESSVVLFNDSC
TITNTVSTIVGTDATAFNTTVACTFEGFPATTSCSLTATSIARQLLQFES
DEVPVNVYGIVLYEPDEQGEVSENARIISGYANSYELETYDREDQGVREI
QSYGVLPDNIIFEGSNGISFLNLASVSVIADDQVFWFNISACSITGSSYD
SSGIVLDNPTQCGLSFAARGEDVFPTFGAHFRPYKSGKFTLQLNWDSIGT
SDEPYEQAVVFSVVERAPPVITGISKLSNYQSLPCGVETLNITGYNFRFS
DKRELLTNNEDGSVSVWPEVEDLFSHNEGEDVSFLSFESSGGVGKDVSFN
VIVFYGSESENAVTLQDDTLFTTNFSTPPVLLSLAPNVTEPEGGTRIILN
GVFDGFKTSSLVRVGGFDVRGSDVEIAEDGSLAFLAPSLSSLGKQFTYDV
SVAVCAERSGSLPLIYNVAPMVLITAADSSTNDDSSYVIPYDGEVTFVAE
VSANNVNVTYLWSLVNADGNAVSLGNSTVNEQIFIVTPDMIRPSGTPYSL
RVIVTNSIGLTDNSDVAIVLANPVDEYILVNVFEIETLQRSLNTTTRKIC
C*

spliced messenger RNA

>Gcaud2277.t1 ID=Gcaud2277.t1|Name=Gcaud2277.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:4269..6295+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCGATCTCATTTATTGTGATGGTGCTCAGTTTCTTCTTTGACGC
TGGGACTGCAGCACTTCAACACCCTTCGTTTTTTCCGCCGACACTCGACT
CTTACCGACAACTTGCGACAATTCCCCCCGTTGGAATATCTGTTGAGTCA
CAGAGTGAGGTGAGTTTTTTCCTGGTCAATGGGGAATCAGATGAATTGGT
TGTGAGCTTTGTTTTCATGCCCCCAAGTGGATCTTCCCCCGAAGAATTCG
TTCTTAGCTTTGGTTGCGAATCGTCTGTCGTGTTGTTTAACGACTCTTGT
ACGATCACGAATACCGTATCTACAATTGTTGGCACGGATGCCACCGCCTT
CAACACTACTGTTGCCTGCACCTTTGAAGGGTTTCCGGCCACAACTTCAT
GTTCGCTGACCGCTACTTCGATTGCACGACAGCTTCTGCAGTTTGAATCG
GATGAAGTTCCTGTAAATGTCTATGGAATTGTGCTTTACGAGCCTGATGA
ACAGGGTGAAGTTTCCGAGAACGCAAGAATTATATCGGGATACGCCAATT
CTTATGAACTTGAAACTTATGACCGAGAAGATCAGGGTGTTCGAGAGATT
CAGTCGTACGGAGTGCTACCGGATAATATCATCTTCGAAGGCTCGAATGG
AATATCTTTTCTCAACTTGGCGTCAGTGTCTGTCATTGCCGACGACCAAG
TATTTTGGTTCAACATCTCCGCATGTTCCATTACTGGAAGCTCTTATGAT
TCCTCTGGGATAGTCTTGGATAATCCTACTCAGTGTGGACTAAGTTTCGC
CGCCAGGGGTGAGGATGTGTTCCCGACTTTTGGGGCACACTTTCGTCCGT
ACAAGTCAGGGAAGTTCACGTTGCAACTAAATTGGGACTCGATCGGTACA
AGCGACGAACCGTATGAACAAGCTGTCGTCTTCAGCGTGGTAGAGCGAGC
ACCTCCAGTGATTACGGGTATCTCCAAACTGTCGAATTACCAGAGTCTCC
CGTGCGGGGTTGAGACATTGAACATAACTGGGTACAATTTCCGATTTAGT
GACAAACGTGAACTTCTAACGAACAACGAAGATGGATCCGTTTCGGTTTG
GCCTGAAGTTGAGGACTTGTTTTCCCACAATGAAGGAGAAGATGTCTCAT
TCTTATCCTTCGAGAGCTCTGGAGGAGTCGGCAAAGATGTTTCCTTCAAT
GTTATAGTTTTCTACGGATCTGAATCAGAAAACGCCGTTACCTTGCAGGA
TGATACTCTCTTTACGACTAACTTCAGCACTCCGCCCGTACTGCTCAGCC
TAGCTCCTAATGTGACAGAGCCGGAAGGTGGCACAAGGATCATTCTGAAT
GGTGTTTTCGATGGATTCAAGACTTCCAGCCTCGTAAGAGTTGGCGGCTT
TGATGTTCGCGGAAGCGATGTCGAAATCGCTGAAGATGGAAGTCTGGCTT
TTCTTGCACCGTCTTTATCATCGCTGGGGAAGCAGTTCACATATGACGTA
TCCGTAGCGGTATGTGCAGAACGTTCTGGCTCTCTACCCTTGATATACAA
CGTTGCTCCAATGGTACTTATCACAGCTGCTGATAGTAGCACAAACGACG
ACAGCTCGTACGTGATACCATACGACGGAGAAGTTACCTTTGTTGCCGAG
GTCTCGGCTAACAACGTTAACGTTACATATCTCTGGAGTTTGGTGAATGC
TGATGGGAACGCGGTTTCTCTGGGGAACTCAACAGTCAACGAACAGATAT
TTATCGTCACTCCAGATATGATACGGCCGAGTGGAACTCCGTATTCGCTA
CGAGTCATCGTAACGAACTCCATTGGACTCACAGATAACTCAGATGTTGC
TATTGTACTTGCCAATCCCGTTGATGAGTATATTTTGGTGAATGTCTTCG
AAATCGAGACTTTGCAGCGTTCTCTGAATACTACAACgcgaaagatttgt
tgttga

protein sequence of Gcaud2277.t1

>Gcaud2277.t1 ID=Gcaud2277.t1|Name=Gcaud2277.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=652bp
MVSISFIVMVLSFFFDAGTAALQHPSFFPPTLDSYRQLATIPPVGISVES
QSEVSFFLVNGESDELVVSFVFMPPSGSSPEEFVLSFGCESSVVLFNDSC
TITNTVSTIVGTDATAFNTTVACTFEGFPATTSCSLTATSIARQLLQFES
DEVPVNVYGIVLYEPDEQGEVSENARIISGYANSYELETYDREDQGVREI
QSYGVLPDNIIFEGSNGISFLNLASVSVIADDQVFWFNISACSITGSSYD
SSGIVLDNPTQCGLSFAARGEDVFPTFGAHFRPYKSGKFTLQLNWDSIGT
SDEPYEQAVVFSVVERAPPVITGISKLSNYQSLPCGVETLNITGYNFRFS
DKRELLTNNEDGSVSVWPEVEDLFSHNEGEDVSFLSFESSGGVGKDVSFN
VIVFYGSESENAVTLQDDTLFTTNFSTPPVLLSLAPNVTEPEGGTRIILN
GVFDGFKTSSLVRVGGFDVRGSDVEIAEDGSLAFLAPSLSSLGKQFTYDV
SVAVCAERSGSLPLIYNVAPMVLITAADSSTNDDSSYVIPYDGEVTFVAE
VSANNVNVTYLWSLVNADGNAVSLGNSTVNEQIFIVTPDMIRPSGTPYSL
RVIVTNSIGLTDNSDVAIVLANPVDEYILVNVFEIETLQRSLNTTTRKIC
C*

mRNA from alignment at NODE_2244_length_6318_cov_4.442749:4269..6295+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2277.t1 ID=Gcaud2277.t1|Name=Gcaud2277.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2027bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:4269..6295+ (Gracilaria caudata M_176_S67 male)
ATGGTTTCGATCTCATTTATTGTGATGGTGCTCAGTTTCTTCTTTGACGC
TGGGACTGCAGCACTTCAACACCCTTCGTTTTTTCCGCCGACACTCGACT
CTTACCGACAACTTGCGACAATTCCCCCCGTTGGAATATCTGTTGAGTCA
CAGAGTGAGGTGAGTTTTTTCCTGGTCAATGGGGAATCAGATGAATTGGT
TGTGAGCTTTGTTTTCATGCCCCCAAGTGGATCTTCCCCCGAAGAATTCG
TTCTTAGCTTTGGTTGCGAATCGTCTGTCGTGTTGTTTAACGACTCTTGT
ACGATCACGAATACCGTATCTACAATTGTTGGCACGGATGCCACCGCCTT
CAACACTACTGTTGCCTGCACCTTTGAAGGGTTTCCGGCCACAACTTCAT
GTTCGCTGACCGCTACTTCGATTGCACGACAGCTTCTGCAGTTTGAATCG
GATGAAGTTCCTGTAAATGTCTATGGAATTGTGCTTTACGAGCCTGATGA
ACAGGGTGAAGTTTCCGAGAACGCAAGAATTATATCGGGATACGCCAATT
CTTATGAACTTGAAACTTATGACCGAGAAGATCAGGGTGTTCGAGAGATT
CAGTCGTACGGAGTGCTACCGGATAATATCATCTTCGAAGGCTCGAATGG
AATATCTTTTCTCAACTTGGCGTCAGTGTCTGTCATTGCCGACGACCAAG
TATTTTGGTTCAACATCTCCGCATGTTCCATTACTGGAAGCTCTTATGAT
TCCTCTGGGATAGTCTTGGATAATCCTACTCAGTGTGGACTAAGTTTCGC
CGCCAGGGGTGAGGATGTGTTCCCGACTTTTGGGGCACACTTTCGTCCGT
ACAAGTCAGGGAAGTTCACGTTGCAACTAAATTGGGACTCGATCGGTACA
AGCGACGAACCGTATGAACAAGCTGTCGTCTTCAGCGTGGTAGAGCGAGC
ACCTCCAGTGATTACGGGTATCTCCAAACTGTCGAATTACCAGAGTCTCC
CGTGCGGGGTTGAGACATTGAACATAACTGGGTACAATTTCCGATTTAGT
GACAAACGTGAACTTCTAACGAACAACGAAGATGGATCCGTTTCGGTTTG
GCCTGAAGTTGAGGACTTGTTTTCCCACAATGAAGGAGAAGATGTCTCAT
TCTTATCCTTCGAGAGCTCTGGAGGAGTCGGCAAAGATGTTTCCTTCAAT
GTTATAGTTTTCTACGGATCTGAATCAGAAAACGCCGTTACCTTGCAGGA
TGATACTCTCTTTACGACTAACTTCAGCACTCCGCCCGTACTGCTCAGCC
TAGCTCCTAATGTGACAGAGCCGGAAGGTGGCACAAGGATCATTCTGAAT
GGTGTTTTCGATGGATTCAAGACTTCCAGCCTCGTAAGAGTTGGCGGCTT
TGATGTTCGCGGAAGCGATGTCGAAATCGCTGAAGATGGAAGTCTGGCTT
TTCTTGCACCGTCTTTATCATCGCTGGGGAAGCAGTTCACATATGACGTA
TCCGTAGCGGTATGTGCAGAACGTTCTGGCTCTCTACCCTTGATATACAA
CGTTGCTCCAATGGTACTTATCACAGCTGCTGATAGTAGCACAAACGACG
ACAGCTCGTACGTGATACCATACGACGGAGAAGTTACCTTTGTTGCCGAG
GTCTCGGCTAACAACGTTAACGTTACATATCTCTGGAGTTTGGTGAATGC
TGATGGGAACGCGGTTTCTCTGGGGAACTCAACAGTCAACGAACAGATAT
TTATCGTCACTCCAGATATGATACGGCCGAGTGGAACTCCGTATTCGCTA
CGAGTCATCGTAACGAACTCCATTGGACTCACAGATAACTCAGATGTTGC
TATTGTACTTGCCAATCCCGTTGATGAGTATATTTTGGTGAATGTCTTCG
AAATCGAGACTTTGCAGCGTTCTCTGAATACTACAACGTTGATACAAGCA
TCCTTGGTAGTGGAAGTCAGCAATATTACCgaaatacttctcgaatgggt
ttacaaaggcgaaagatttgttgttga

Coding sequence (CDS) from alignment at NODE_2244_length_6318_cov_4.442749:4269..6295+

>Gcaud2277.t1 ID=Gcaud2277.t1|Name=Gcaud2277.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1956bp|location=Sequence derived from alignment at NODE_2244_length_6318_cov_4.442749:4269..6295+ (Gracilaria caudata M_176_S67 male)
ATGGTTTCGATCTCATTTATTGTGATGGTGCTCAGTTTCTTCTTTGACGC
TGGGACTGCAGCACTTCAACACCCTTCGTTTTTTCCGCCGACACTCGACT
CTTACCGACAACTTGCGACAATTCCCCCCGTTGGAATATCTGTTGAGTCA
CAGAGTGAGGTGAGTTTTTTCCTGGTCAATGGGGAATCAGATGAATTGGT
TGTGAGCTTTGTTTTCATGCCCCCAAGTGGATCTTCCCCCGAAGAATTCG
TTCTTAGCTTTGGTTGCGAATCGTCTGTCGTGTTGTTTAACGACTCTTGT
ACGATCACGAATACCGTATCTACAATTGTTGGCACGGATGCCACCGCCTT
CAACACTACTGTTGCCTGCACCTTTGAAGGGTTTCCGGCCACAACTTCAT
GTTCGCTGACCGCTACTTCGATTGCACGACAGCTTCTGCAGTTTGAATCG
GATGAAGTTCCTGTAAATGTCTATGGAATTGTGCTTTACGAGCCTGATGA
ACAGGGTGAAGTTTCCGAGAACGCAAGAATTATATCGGGATACGCCAATT
CTTATGAACTTGAAACTTATGACCGAGAAGATCAGGGTGTTCGAGAGATT
CAGTCGTACGGAGTGCTACCGGATAATATCATCTTCGAAGGCTCGAATGG
AATATCTTTTCTCAACTTGGCGTCAGTGTCTGTCATTGCCGACGACCAAG
TATTTTGGTTCAACATCTCCGCATGTTCCATTACTGGAAGCTCTTATGAT
TCCTCTGGGATAGTCTTGGATAATCCTACTCAGTGTGGACTAAGTTTCGC
CGCCAGGGGTGAGGATGTGTTCCCGACTTTTGGGGCACACTTTCGTCCGT
ACAAGTCAGGGAAGTTCACGTTGCAACTAAATTGGGACTCGATCGGTACA
AGCGACGAACCGTATGAACAAGCTGTCGTCTTCAGCGTGGTAGAGCGAGC
ACCTCCAGTGATTACGGGTATCTCCAAACTGTCGAATTACCAGAGTCTCC
CGTGCGGGGTTGAGACATTGAACATAACTGGGTACAATTTCCGATTTAGT
GACAAACGTGAACTTCTAACGAACAACGAAGATGGATCCGTTTCGGTTTG
GCCTGAAGTTGAGGACTTGTTTTCCCACAATGAAGGAGAAGATGTCTCAT
TCTTATCCTTCGAGAGCTCTGGAGGAGTCGGCAAAGATGTTTCCTTCAAT
GTTATAGTTTTCTACGGATCTGAATCAGAAAACGCCGTTACCTTGCAGGA
TGATACTCTCTTTACGACTAACTTCAGCACTCCGCCCGTACTGCTCAGCC
TAGCTCCTAATGTGACAGAGCCGGAAGGTGGCACAAGGATCATTCTGAAT
GGTGTTTTCGATGGATTCAAGACTTCCAGCCTCGTAAGAGTTGGCGGCTT
TGATGTTCGCGGAAGCGATGTCGAAATCGCTGAAGATGGAAGTCTGGCTT
TTCTTGCACCGTCTTTATCATCGCTGGGGAAGCAGTTCACATATGACGTA
TCCGTAGCGGTATGTGCAGAACGTTCTGGCTCTCTACCCTTGATATACAA
CGTTGCTCCAATGGTACTTATCACAGCTGCTGATAGTAGCACAAACGACG
ACAGCTCGTACGTGATACCATACGACGGAGAAGTTACCTTTGTTGCCGAG
GTCTCGGCTAACAACGTTAACGTTACATATCTCTGGAGTTTGGTGAATGC
TGATGGGAACGCGGTTTCTCTGGGGAACTCAACAGTCAACGAACAGATAT
TTATCGTCACTCCAGATATGATACGGCCGAGTGGAACTCCGTATTCGCTA
CGAGTCATCGTAACGAACTCCATTGGACTCACAGATAACTCAGATGTTGC
TATTGTACTTGCCAATCCCGTTGATGAGTATATTTTGGTGAATGTCTTCG
AAATCGAGACTTTGCAGCGTTCTCTGAATACTACAACgcgaaagatttgt
tgttga