Gcaud2021.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2021.t1
Unique Name	Gcaud2021.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	657

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2232_length_6368_cov_4.621635	contig	NODE_2232_length_6368_cov_4.621635:2187..4415 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2021	Gcaud2021	Gracilaria caudata M_176_S67 male	gene	NODE_2232_length_6368_cov_4.621635 2187..4415 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2021.t1	Gcaud2021.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2232_length_6368_cov_4.621635 2187..4415 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2021.t1.CDS1	Gcaud2021.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2232_length_6368_cov_4.621635 2187..3339 -
Gcaud2021.t1.CDS2	Gcaud2021.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_2232_length_6368_cov_4.621635 3598..4415 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2021.t1.exon1	Gcaud2021.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2232_length_6368_cov_4.621635 2187..3339 -
Gcaud2021.t1.exon2	Gcaud2021.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_2232_length_6368_cov_4.621635 3598..4415 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2021.t1.intron1	Gcaud2021.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_2232_length_6368_cov_4.621635 3340..3597 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2021.t1.start1	Gcaud2021.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2232_length_6368_cov_4.621635 4413..4415 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2232_length_6368_cov_4.621635:2187..4415-
coding sequence from alignment at NODE_2232_length_6368_cov_4.621635:2187..4415-

mRNA sequence

>Gcaud2021.t1 ID=Gcaud2021.t1|Name=Gcaud2021.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=657bp
MINADSRLVYTTRENDLAIKADKYIEFKPRKAKESRAMFLKHSGLEHCVI
GKKANTEALEGILKACGGIPLLLAVTGLGVREYFSSVKGPKEDALKLYHD
KLRREPDAMIKGEMEGYGLVRNVTDTSISVLNLRWEERKKKEEFPMSIRE
MHQSLCVLQKQQEVPASMLRRLWSLSDERKALEAMRALNSVGVVDVTIPE
NEGELSSVLRVHDDIIDALFYDSTNEKKRHFNRLLDNYLRDSGGAVDAER
NMISVNADEREGRGIGPWLNLKRGKQAIDCCDMETKEEKKRAMDLISQAA
RLSHQAVAENPREATFQLYGRLIWYSEKCETARRFVEEIEEIAEKPWAKA
RKGFLSAAGDAILESISVGGKVERIVEKENELWVLCWRPGKKLQQIVKYN
LKYGNQTKVEIEGKFGEAAMYNDFQIDMCMCGDRFMECTTSSEDLRWGAS
VFPEHGTVIVWDRQHVHEPRKLVTGRKEKVCCVALSAIRKKLVCGLADGT
IYVWDLESGDAIFEALQGHRSSVRCLALSENGDMIASGSSDGSIRLWNTE
SGRCFGVVEIGNDVGSVAFAKGGKRVLWSAIGGEYGFSEHANGRVVTTVV
GVNTNKITTFLGSSKDGSVGFFGFTDGTVRLWDLRRAQSEMDDREEGGHE
KKIHCAE

spliced messenger RNA

>Gcaud2021.t1 ID=Gcaud2021.t1|Name=Gcaud2021.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1971bp|location=Sequence derived from alignment at NODE_2232_length_6368_cov_4.621635:2187..4415- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAACGCTGACAGCCGTCTTGTATATACGACGAGGGAGAATGACCT
TGCCATTAAGGCGGATAAATACATAGAGTTTAAGCCTAGGAAAGCGAAAG
AGTCGCGAGCTATGTTCTTGAAGCACTCTGGCCTGGAGCACTGTGTGATT
GGGAAGAAGGCAAACACGGAAGCATTAGAGGGTATTCTGAAGGCGTGTGG
AGGAATTCCTTTATTGCTTGCTGTGACAGGGTTAGGCGTTCGGGAGTACT
TTTCATCCGTGAAGGGACCCAAGGAAGATGCTCTGAAACTCTATCACGAC
AAACTGCGGAGAGAACCAGATGCAATGATAAAGGGAGAGATGGAGGGCTA
TGGTCTGGTGCGAAATGTTACAGACACTTCAATCTCGGTGCTAAATCTTC
GTTGGGAAGAGAGGAAAAAGAAGGAAGAGTTTCCCATGTCGATTAGAGAA
ATGCATCAATCTCTGTGCGTGTTGCAGAAACAGCAGGAAGTGCCCGCGTC
GATGCTTCGACGGCTATGGAGTCTGAGTGATGAAAGGAAGGCTTTGGAAG
CGATGAGAGCATTGAACTCGGTCGGAGTTGTTGATGTCACGATCCCTGAA
AATGAAGGCGAACTGAGTTCGGTTTTGCGTGTGCACGACGACATCATTGA
CGCGCTCTTTTACGATTCAACGAATGAGAAGAAAAGGCATTTCAATCGCT
TGTTGGACAACTATCTTCGTGATAGTGGTGGTGCTGTTGACGCTGAACGG
AACATGATTTCTGTAAATGCTGATGAGAGAGAAGGGAGAGGCATTGGACC
TTGGTTGAACCTGAAGCGAGGGAAGCAGGCTATTGATTGTTGTGATATGG
AAACAAAGGAGGAGAAGAAGAGGGCAATGGATTTAATTTCGCAAGCAGCA
CGGTTAAGTCATCAAGCTGTCGCAGAGAACCCCAGAGAAGCCACTTTTCA
GCTGTATGGACGTCTGATATGGTACTCAGAGAAGTGCGAAACGGCACGAA
GGTTTGTAGAGGAAATCGAAGAGATTGCAGAGAAGCCTTGGGCAAAAGCC
AGAAAGGGTTTCTTATCTGCTGCAGGAGATGCTATTCTGGAGAGTATTTC
AGTGGGTGGGAAAGTCGAAAGAATTGTGGAGAAGGAGAACGAGCTGTGGG
TGCTCTGCTGGCGTCCGGGTAAAAAGCTGCAGCAGATAGTGAAATACAAC
CTCAAGTACGGTAACCAAACCAAAGTTGAAATCGAAGGAAAGTTTGGAGA
AGCCGCGATGTACAACGATTTCCAAATAGATATGTGCATGTGCGGTGATC
GTTTCATGGAGTGCACTACTTCCAGCGAGGACTTGCGATGGGGTGCATCT
GTATTTCCAGAGCATGGAACGGTGATAGTGTGGGACCGGCAGCATGTTCA
CGAGCCGCGTAAACTTGTGACTGGGAGGAAGGAGAAGGTCTGTTGTGTTG
CTCTGAGTGCCATACGGAAGAAACTTGTTTGTGGGTTAGCTGACGGCACG
ATATATGTATGGGATTTAGAGAGTGGGGACGCAATTTTTGAAGCGCTGCA
GGGGCATCGAAGTTCGGTACGTTGTCTGGCATTGAGTGAGAACGGGGACA
TGATTGCTTCCGGGTCCAGCGATGGAAGTATTCGCCTTTGGAATACAGAG
AGCGGCAGATGCTTCGGGGTTGTTGAGATTGGAAACGATGTCGGAAGCGT
GGCGTTCGCCAAAGGAGGGAAAAGGGTTTTGTGGTCCGCTATTGGAGGAG
AGTATGGGTTCTCGGAGCATGCGAACGGACGTGTCGTGACAACAGTGGTT
GGCGTTAACACGAACAAAATCACTACGTTCCTTGGTTCAAGTAAGGATGG
CTCTGTTGGATTTTTTGGGTTTACAGACGGAACCGTTCGATTGTGGGATC
TCAGACGCGCGCAGTCGGAGATGGACGACCGGGAAGAGGGCGGACACGAG
AAGAAAATACACTGTGCCGAA

protein sequence of Gcaud2021.t1

>Gcaud2021.t1 ID=Gcaud2021.t1|Name=Gcaud2021.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=657bp
MINADSRLVYTTRENDLAIKADKYIEFKPRKAKESRAMFLKHSGLEHCVI
GKKANTEALEGILKACGGIPLLLAVTGLGVREYFSSVKGPKEDALKLYHD
KLRREPDAMIKGEMEGYGLVRNVTDTSISVLNLRWEERKKKEEFPMSIRE
MHQSLCVLQKQQEVPASMLRRLWSLSDERKALEAMRALNSVGVVDVTIPE
NEGELSSVLRVHDDIIDALFYDSTNEKKRHFNRLLDNYLRDSGGAVDAER
NMISVNADEREGRGIGPWLNLKRGKQAIDCCDMETKEEKKRAMDLISQAA
RLSHQAVAENPREATFQLYGRLIWYSEKCETARRFVEEIEEIAEKPWAKA
RKGFLSAAGDAILESISVGGKVERIVEKENELWVLCWRPGKKLQQIVKYN
LKYGNQTKVEIEGKFGEAAMYNDFQIDMCMCGDRFMECTTSSEDLRWGAS
VFPEHGTVIVWDRQHVHEPRKLVTGRKEKVCCVALSAIRKKLVCGLADGT
IYVWDLESGDAIFEALQGHRSSVRCLALSENGDMIASGSSDGSIRLWNTE
SGRCFGVVEIGNDVGSVAFAKGGKRVLWSAIGGEYGFSEHANGRVVTTVV
GVNTNKITTFLGSSKDGSVGFFGFTDGTVRLWDLRRAQSEMDDREEGGHE
KKIHCAE

mRNA from alignment at NODE_2232_length_6368_cov_4.621635:2187..4415-

Legend: polypeptideCDSexonstart_codonintron

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2021.t1 ID=Gcaud2021.t1|Name=Gcaud2021.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2229bp|location=Sequence derived from alignment at NODE_2232_length_6368_cov_4.621635:2187..4415- (Gracilaria caudata M_176_S67 male)
ATGATCAACGCTGACAGCCGTCTTGTATATACGACGAGGGAGAATGACCT
TGCCATTAAGGCGGATAAATACATAGAGTTTAAGCCTAGGAAAGCGAAAG
AGTCGCGAGCTATGTTCTTGAAGCACTCTGGCCTGGAGCACTGTGTGATT
GGGAAGAAGGCAAACACGGAAGCATTAGAGGGTATTCTGAAGGCGTGTGG
AGGAATTCCTTTATTGCTTGCTGTGACAGGGTTAGGCGTTCGGGAGTACT
TTTCATCCGTGAAGGGACCCAAGGAAGATGCTCTGAAACTCTATCACGAC
AAACTGCGGAGAGAACCAGATGCAATGATAAAGGGAGAGATGGAGGGCTA
TGGTCTGGTGCGAAATGTTACAGACACTTCAATCTCGGTGCTAAATCTTC
GTTGGGAAGAGAGGAAAAAGAAGGAAGAGTTTCCCATGTCGATTAGAGAA
ATGCATCAATCTCTGTGCGTGTTGCAGAAACAGCAGGAAGTGCCCGCGTC
GATGCTTCGACGGCTATGGAGTCTGAGTGATGAAAGGAAGGCTTTGGAAG
CGATGAGAGCATTGAACTCGGTCGGAGTTGTTGATGTCACGATCCCTGAA
AATGAAGGCGAACTGAGTTCGGTTTTGCGTGTGCACGACGACATCATTGA
CGCGCTCTTTTACGATTCAACGAATGAGAAGAAAAGGCATTTCAATCGCT
TGTTGGACAACTATCTTCGTGATAGTGGTGGTGCTGTTGACGCTGAACGG
AACATGATTTCTGTAAATGCTGATGAGAGAGAAGGGAGAGGCATTGGACC
TTGGTTGAACCTGAAGCGGTTATGTTGCTGGATTTCAAACGATAGGGAGG
GAGAGATTGTGGACGAAACGGCAGTTGCAGACTGCACAACAGAACGCAAA
AAAAGAGAATGGTGGACTTTGGCAGACGAGCAACATTATCTAGAGAACAA
CGTTTGTCGACTTCTCTATGAAGCTGGAAATTATGAAGAATTGATTTGGC
TGTTGCTGAAACCGCAGTGGATTGTGAAGCGTCTCCAGACAGGTGGCATT
TTTGCACTTGAGAATGATATTTCCAGAGGGAAGCAGGCTATTGATTGTTG
TGATATGGAAACAAAGGAGGAGAAGAAGAGGGCAATGGATTTAATTTCGC
AAGCAGCACGGTTAAGTCATCAAGCTGTCGCAGAGAACCCCAGAGAAGCC
ACTTTTCAGCTGTATGGACGTCTGATATGGTACTCAGAGAAGTGCGAAAC
GGCACGAAGGTTTGTAGAGGAAATCGAAGAGATTGCAGAGAAGCCTTGGG
CAAAAGCCAGAAAGGGTTTCTTATCTGCTGCAGGAGATGCTATTCTGGAG
AGTATTTCAGTGGGTGGGAAAGTCGAAAGAATTGTGGAGAAGGAGAACGA
GCTGTGGGTGCTCTGCTGGCGTCCGGGTAAAAAGCTGCAGCAGATAGTGA
AATACAACCTCAAGTACGGTAACCAAACCAAAGTTGAAATCGAAGGAAAG
TTTGGAGAAGCCGCGATGTACAACGATTTCCAAATAGATATGTGCATGTG
CGGTGATCGTTTCATGGAGTGCACTACTTCCAGCGAGGACTTGCGATGGG
GTGCATCTGTATTTCCAGAGCATGGAACGGTGATAGTGTGGGACCGGCAG
CATGTTCACGAGCCGCGTAAACTTGTGACTGGGAGGAAGGAGAAGGTCTG
TTGTGTTGCTCTGAGTGCCATACGGAAGAAACTTGTTTGTGGGTTAGCTG
ACGGCACGATATATGTATGGGATTTAGAGAGTGGGGACGCAATTTTTGAA
GCGCTGCAGGGGCATCGAAGTTCGGTACGTTGTCTGGCATTGAGTGAGAA
CGGGGACATGATTGCTTCCGGGTCCAGCGATGGAAGTATTCGCCTTTGGA
ATACAGAGAGCGGCAGATGCTTCGGGGTTGTTGAGATTGGAAACGATGTC
GGAAGCGTGGCGTTCGCCAAAGGAGGGAAAAGGGTTTTGTGGTCCGCTAT
TGGAGGAGAGTATGGGTTCTCGGAGCATGCGAACGGACGTGTCGTGACAA
CAGTGGTTGGCGTTAACACGAACAAAATCACTACGTTCCTTGGTTCAAGT
AAGGATGGCTCTGTTGGATTTTTTGGGTTTACAGACGGAACCGTTCGATT
GTGGGATCTCAGACGCGCGCAGTCGGAGATGGACGACCGGGAAGAGGGCG
GACACGAGAAGAAAATACACTGTGCCGAA

Coding sequence (CDS) from alignment at NODE_2232_length_6368_cov_4.621635:2187..4415-

>Gcaud2021.t1 ID=Gcaud2021.t1|Name=Gcaud2021.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1971bp|location=Sequence derived from alignment at NODE_2232_length_6368_cov_4.621635:2187..4415- (Gracilaria caudata M_176_S67 male)
ATGATCAACGCTGACAGCCGTCTTGTATATACGACGAGGGAGAATGACCT
TGCCATTAAGGCGGATAAATACATAGAGTTTAAGCCTAGGAAAGCGAAAG
AGTCGCGAGCTATGTTCTTGAAGCACTCTGGCCTGGAGCACTGTGTGATT
GGGAAGAAGGCAAACACGGAAGCATTAGAGGGTATTCTGAAGGCGTGTGG
AGGAATTCCTTTATTGCTTGCTGTGACAGGGTTAGGCGTTCGGGAGTACT
TTTCATCCGTGAAGGGACCCAAGGAAGATGCTCTGAAACTCTATCACGAC
AAACTGCGGAGAGAACCAGATGCAATGATAAAGGGAGAGATGGAGGGCTA
TGGTCTGGTGCGAAATGTTACAGACACTTCAATCTCGGTGCTAAATCTTC
GTTGGGAAGAGAGGAAAAAGAAGGAAGAGTTTCCCATGTCGATTAGAGAA
ATGCATCAATCTCTGTGCGTGTTGCAGAAACAGCAGGAAGTGCCCGCGTC
GATGCTTCGACGGCTATGGAGTCTGAGTGATGAAAGGAAGGCTTTGGAAG
CGATGAGAGCATTGAACTCGGTCGGAGTTGTTGATGTCACGATCCCTGAA
AATGAAGGCGAACTGAGTTCGGTTTTGCGTGTGCACGACGACATCATTGA
CGCGCTCTTTTACGATTCAACGAATGAGAAGAAAAGGCATTTCAATCGCT
TGTTGGACAACTATCTTCGTGATAGTGGTGGTGCTGTTGACGCTGAACGG
AACATGATTTCTGTAAATGCTGATGAGAGAGAAGGGAGAGGCATTGGACC
TTGGTTGAACCTGAAGCGAGGGAAGCAGGCTATTGATTGTTGTGATATGG
AAACAAAGGAGGAGAAGAAGAGGGCAATGGATTTAATTTCGCAAGCAGCA
CGGTTAAGTCATCAAGCTGTCGCAGAGAACCCCAGAGAAGCCACTTTTCA
GCTGTATGGACGTCTGATATGGTACTCAGAGAAGTGCGAAACGGCACGAA
GGTTTGTAGAGGAAATCGAAGAGATTGCAGAGAAGCCTTGGGCAAAAGCC
AGAAAGGGTTTCTTATCTGCTGCAGGAGATGCTATTCTGGAGAGTATTTC
AGTGGGTGGGAAAGTCGAAAGAATTGTGGAGAAGGAGAACGAGCTGTGGG
TGCTCTGCTGGCGTCCGGGTAAAAAGCTGCAGCAGATAGTGAAATACAAC
CTCAAGTACGGTAACCAAACCAAAGTTGAAATCGAAGGAAAGTTTGGAGA
AGCCGCGATGTACAACGATTTCCAAATAGATATGTGCATGTGCGGTGATC
GTTTCATGGAGTGCACTACTTCCAGCGAGGACTTGCGATGGGGTGCATCT
GTATTTCCAGAGCATGGAACGGTGATAGTGTGGGACCGGCAGCATGTTCA
CGAGCCGCGTAAACTTGTGACTGGGAGGAAGGAGAAGGTCTGTTGTGTTG
CTCTGAGTGCCATACGGAAGAAACTTGTTTGTGGGTTAGCTGACGGCACG
ATATATGTATGGGATTTAGAGAGTGGGGACGCAATTTTTGAAGCGCTGCA
GGGGCATCGAAGTTCGGTACGTTGTCTGGCATTGAGTGAGAACGGGGACA
TGATTGCTTCCGGGTCCAGCGATGGAAGTATTCGCCTTTGGAATACAGAG
AGCGGCAGATGCTTCGGGGTTGTTGAGATTGGAAACGATGTCGGAAGCGT
GGCGTTCGCCAAAGGAGGGAAAAGGGTTTTGTGGTCCGCTATTGGAGGAG
AGTATGGGTTCTCGGAGCATGCGAACGGACGTGTCGTGACAACAGTGGTT
GGCGTTAACACGAACAAAATCACTACGTTCCTTGGTTCAAGTAAGGATGG
CTCTGTTGGATTTTTTGGGTTTACAGACGGAACCGTTCGATTGTGGGATC
TCAGACGCGCGCAGTCGGAGATGGACGACCGGGAAGAGGGCGGACACGAG
AAGAAAATACACTGTGCCGAA