Gcaud2998.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2998.t1
Unique Name	Gcaud2998.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	359

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_222_length_35706_cov_4.342356	contig	NODE_222_length_35706_cov_4.342356:19868..21056 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ09912
PFAMs	UEV,Vps23_core
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12183
KEGG Pathway	ko04144,map04144
KEGG Module	M00409
GOs	GO:0000813,GO:0000902,GO:0000904,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010008,GO:0010026,GO:0010090,GO:0010091,GO:0012505,GO:0016020,GO:0016043,GO:0030154,GO:0031090,GO:0031410,GO:0031982,GO:0032182,GO:0032502,GO:0032989,GO:0032991,GO:0036452,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048856,GO:0048869,GO:0051301,GO:0071840,GO:0090558,GO:0090626,GO:0097708,GO:0098588,GO:0098796,GO:0098805
Evalue	2.6e-30
EggNOG OGs	KOG2391@1\|root,KOG2391@2759\|Eukaryota,37J7A@33090\|Viridiplantae,3GF9B@35493\|Streptophyta
Description	trichome branching
COG category	U
BRITE	ko00000,ko00001,ko00002,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2998	Gcaud2998	Gracilaria caudata M_176_S67 male	gene	NODE_222_length_35706_cov_4.342356 19868..21056 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2998.t1	Gcaud2998.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_222_length_35706_cov_4.342356 19868..21056 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2998.t1.start1	Gcaud2998.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_222_length_35706_cov_4.342356 19868..19870 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2998.t1.CDS1	Gcaud2998.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 19868..19930 +
Gcaud2998.t1.CDS2	Gcaud2998.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_222_length_35706_cov_4.342356 20043..21056 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2998.t1.exon1	Gcaud2998.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 19868..19930 +
Gcaud2998.t1.exon2	Gcaud2998.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_222_length_35706_cov_4.342356 20043..21056 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2998.t1.intron1	Gcaud2998.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_222_length_35706_cov_4.342356 19931..20042 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2998.t1.stop1	Gcaud2998.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_222_length_35706_cov_4.342356 21054..21056 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_222_length_35706_cov_4.342356:19868..21056+
coding sequence from alignment at NODE_222_length_35706_cov_4.342356:19868..21056+

mRNA sequence

>Gcaud2998.t1 ID=Gcaud2998.t1|Name=Gcaud2998.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=359bp
MPCPPRAPVPLQIPQHIRACIQQSRAYQPQNEPRVIHDLIECCTRYPTLR
ARISNFRPERCAQRLVALRGTIPIVYKGAPYKIPVHIWVMAYHPLGPPHI
FVVPTPTMVLRPRHPHVAQNGFVHLPYLSQWDPLTSTLQECVDAMRQAFS
IKPPVYSRDTASAQPPEQQQKQNLIRTLSARLTSALQARQRAADEHMHKL
HLRRSNIVAEENTNHALNQHNTKQYLPLLQHHELLATKQATLTEWLSHHP
PPPPRASIDDVTHPLTVLSEQSLKAKAADAAMADALDQMDEAIDKGVVDT
DTYMREVRKLARMQFFHRVMLRKIQLLLAATESHPGYHPVMPNASPRLQP
VPHTAFKI*

spliced messenger RNA

>Gcaud2998.t1 ID=Gcaud2998.t1|Name=Gcaud2998.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1077bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:19868..21056+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTGTCCGCCTCGTGCGCCAGTGCCGCTGCAGATCCCACAGCATAT
CAGGGCCTGCATTCAACAGTCGCGCGCGTACCAACCGCAGAATGAGCCGC
GAGTCATTCACGACCTCATCGAATGCTGCACTCGGTATCCCACGCTTCGC
GCGCGCATTTCCAACTTTCGCCCCGAGCGTTGCGCGCAGCGACTGGTCGC
GTTGCGAGGAACCATCCCAATTGTGTACAAGGGCGCGCCGTACAAGATTC
CGGTCCATATTTGGGTAATGGCTTACCATCCTCTGGGTCCGCCTCACATA
TTCGTTGTGCCTACACCCACAATGGTCTTGCGCCCACGTCATCCGCACGT
CGCCCAGAATGGCTTCGTTCATTTACCCTACCTCTCTCAGTGGGACCCGC
TTACCAGTACTCTCCAGGAATGTGTCGATGCCATGAGACAAGCCTTTTCC
ATCAAACCGCCAGTATACTCGCGAGACACCGCCTCTGCCCAGCCTCCAGA
ACAACAGCAAAAGCAGAATCTCATACGCACACTTTCTGCGCGCCTCACAT
CTGCACTGCAAGCGCGTCAAAGAGCCGCCGACGAACACATGCACAAACTC
CACTTGCGTCGGAGTAACATTGTTGCCGAAGAAAATACGAATCACGCGCT
CAATCAGCACAACACAAAGCAATACCTACCTCTGCTGCAACACCATGAAC
TCCTCGCCACCAAGCAAGCCACGCTCACTGAATGGCTTTCTCATCATCCG
CCGCCACCACCGCGCGCATCCATAGACGACGTCACGCACCCTCTAACAGT
GCTCTCTGAACAGAGTTTAAAGGCCAAAGCGGCCGATGCTGCCATGGCGG
ATGCACTGGATCAGATGGATGAAGCAATTGATAAGGGCGTCGTTGACACC
GACACATACATGAGAGAGGTTCGTAAACTGGCTCGTATGCAGTTCTTCCA
TCGTGTCATGTTGCGAAAAATACAGCTGCTGCTGGCGGCAACTGAATCTC
ACCCTGGATATCATCCTGTCATGCCCAATGCTTCACCGAGACTGCAACCA
GTTCCGCATACCGCCTTCAAAATCTAA

protein sequence of Gcaud2998.t1

>Gcaud2998.t1 ID=Gcaud2998.t1|Name=Gcaud2998.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=359bp
MPCPPRAPVPLQIPQHIRACIQQSRAYQPQNEPRVIHDLIECCTRYPTLR
ARISNFRPERCAQRLVALRGTIPIVYKGAPYKIPVHIWVMAYHPLGPPHI
FVVPTPTMVLRPRHPHVAQNGFVHLPYLSQWDPLTSTLQECVDAMRQAFS
IKPPVYSRDTASAQPPEQQQKQNLIRTLSARLTSALQARQRAADEHMHKL
HLRRSNIVAEENTNHALNQHNTKQYLPLLQHHELLATKQATLTEWLSHHP
PPPPRASIDDVTHPLTVLSEQSLKAKAADAAMADALDQMDEAIDKGVVDT
DTYMREVRKLARMQFFHRVMLRKIQLLLAATESHPGYHPVMPNASPRLQP
VPHTAFKI*

mRNA from alignment at NODE_222_length_35706_cov_4.342356:19868..21056+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2998.t1 ID=Gcaud2998.t1|Name=Gcaud2998.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1189bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:19868..21056+ (Gracilaria caudata M_176_S67 male)
ATGCCGTGTCCGCCTCGTGCGCCAGTGCCGCTGCAGATCCCACAGCATAT
CAGGGCCTGCATTGTAAGTTCGTCTCTCCCTCTACACGCTCCCCGTGCTG
ACTGCTTCCTCCAGAGTCGTGCGCGGCAGCCTTCCTGACTTTGTGCTCTG
TTCTTTCTCCTTATGTGTGCCTCAGCAACAGTCGCGCGCGTACCAACCGC
AGAATGAGCCGCGAGTCATTCACGACCTCATCGAATGCTGCACTCGGTAT
CCCACGCTTCGCGCGCGCATTTCCAACTTTCGCCCCGAGCGTTGCGCGCA
GCGACTGGTCGCGTTGCGAGGAACCATCCCAATTGTGTACAAGGGCGCGC
CGTACAAGATTCCGGTCCATATTTGGGTAATGGCTTACCATCCTCTGGGT
CCGCCTCACATATTCGTTGTGCCTACACCCACAATGGTCTTGCGCCCACG
TCATCCGCACGTCGCCCAGAATGGCTTCGTTCATTTACCCTACCTCTCTC
AGTGGGACCCGCTTACCAGTACTCTCCAGGAATGTGTCGATGCCATGAGA
CAAGCCTTTTCCATCAAACCGCCAGTATACTCGCGAGACACCGCCTCTGC
CCAGCCTCCAGAACAACAGCAAAAGCAGAATCTCATACGCACACTTTCTG
CGCGCCTCACATCTGCACTGCAAGCGCGTCAAAGAGCCGCCGACGAACAC
ATGCACAAACTCCACTTGCGTCGGAGTAACATTGTTGCCGAAGAAAATAC
GAATCACGCGCTCAATCAGCACAACACAAAGCAATACCTACCTCTGCTGC
AACACCATGAACTCCTCGCCACCAAGCAAGCCACGCTCACTGAATGGCTT
TCTCATCATCCGCCGCCACCACCGCGCGCATCCATAGACGACGTCACGCA
CCCTCTAACAGTGCTCTCTGAACAGAGTTTAAAGGCCAAAGCGGCCGATG
CTGCCATGGCGGATGCACTGGATCAGATGGATGAAGCAATTGATAAGGGC
GTCGTTGACACCGACACATACATGAGAGAGGTTCGTAAACTGGCTCGTAT
GCAGTTCTTCCATCGTGTCATGTTGCGAAAAATACAGCTGCTGCTGGCGG
CAACTGAATCTCACCCTGGATATCATCCTGTCATGCCCAATGCTTCACCG
AGACTGCAACCAGTTCCGCATACCGCCTTCAAAATCTAA

Coding sequence (CDS) from alignment at NODE_222_length_35706_cov_4.342356:19868..21056+

>Gcaud2998.t1 ID=Gcaud2998.t1|Name=Gcaud2998.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1077bp|location=Sequence derived from alignment at NODE_222_length_35706_cov_4.342356:19868..21056+ (Gracilaria caudata M_176_S67 male)
ATGCCGTGTCCGCCTCGTGCGCCAGTGCCGCTGCAGATCCCACAGCATAT
CAGGGCCTGCATTCAACAGTCGCGCGCGTACCAACCGCAGAATGAGCCGC
GAGTCATTCACGACCTCATCGAATGCTGCACTCGGTATCCCACGCTTCGC
GCGCGCATTTCCAACTTTCGCCCCGAGCGTTGCGCGCAGCGACTGGTCGC
GTTGCGAGGAACCATCCCAATTGTGTACAAGGGCGCGCCGTACAAGATTC
CGGTCCATATTTGGGTAATGGCTTACCATCCTCTGGGTCCGCCTCACATA
TTCGTTGTGCCTACACCCACAATGGTCTTGCGCCCACGTCATCCGCACGT
CGCCCAGAATGGCTTCGTTCATTTACCCTACCTCTCTCAGTGGGACCCGC
TTACCAGTACTCTCCAGGAATGTGTCGATGCCATGAGACAAGCCTTTTCC
ATCAAACCGCCAGTATACTCGCGAGACACCGCCTCTGCCCAGCCTCCAGA
ACAACAGCAAAAGCAGAATCTCATACGCACACTTTCTGCGCGCCTCACAT
CTGCACTGCAAGCGCGTCAAAGAGCCGCCGACGAACACATGCACAAACTC
CACTTGCGTCGGAGTAACATTGTTGCCGAAGAAAATACGAATCACGCGCT
CAATCAGCACAACACAAAGCAATACCTACCTCTGCTGCAACACCATGAAC
TCCTCGCCACCAAGCAAGCCACGCTCACTGAATGGCTTTCTCATCATCCG
CCGCCACCACCGCGCGCATCCATAGACGACGTCACGCACCCTCTAACAGT
GCTCTCTGAACAGAGTTTAAAGGCCAAAGCGGCCGATGCTGCCATGGCGG
ATGCACTGGATCAGATGGATGAAGCAATTGATAAGGGCGTCGTTGACACC
GACACATACATGAGAGAGGTTCGTAAACTGGCTCGTATGCAGTTCTTCCA
TCGTGTCATGTTGCGAAAAATACAGCTGCTGCTGGCGGCAACTGAATCTC
ACCCTGGATATCATCCTGTCATGCCCAATGCTTCACCGAGACTGCAACCA
GTTCCGCATACCGCCTTCAAAATCTAA