Gcaud2294.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2294.t1
Unique NameGcaud2294.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length122
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_220_length_36054_cov_4.510163contigNODE_220_length_36054_cov_4.510163:27489..27956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2294Gcaud2294Gracilaria caudata M_176_S67 malegeneNODE_220_length_36054_cov_4.510163 27489..27956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2294.t1Gcaud2294.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_220_length_36054_cov_4.510163 27489..27956 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2294.t1.start1Gcaud2294.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_220_length_36054_cov_4.510163 27489..27491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2294.t1.CDS1Gcaud2294.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_220_length_36054_cov_4.510163 27489..27517 +
Gcaud2294.t1.CDS2Gcaud2294.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_220_length_36054_cov_4.510163 27620..27956 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2294.t1.exon1Gcaud2294.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_220_length_36054_cov_4.510163 27489..27517 +
Gcaud2294.t1.exon2Gcaud2294.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_220_length_36054_cov_4.510163 27620..27956 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2294.t1.intron1Gcaud2294.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_220_length_36054_cov_4.510163 27518..27619 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2294.t1.stop1Gcaud2294.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_220_length_36054_cov_4.510163 27954..27956 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2294.t1 ID=Gcaud2294.t1|Name=Gcaud2294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=122bp
MLYRAHTHYRRQANATVRCISENERYLNRICNRKNGTVFARRASPVLDGC
VTETMTTEEQELTQPFSFSRDSCVAKFGWLKDVQVSAASWMCECWQNDFY
EVKPGWAIYGIKGNATEAEEE*
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spliced messenger RNA

>Gcaud2294.t1 ID=Gcaud2294.t1|Name=Gcaud2294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=366bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:27489..27956+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTATCGAGCTCATACGCATTATCGTCGGCAAGCAAACGCAACCGT
GCGCTGCATTTCGGAGAACGAGCGATACTTAAACCGAATCTGTAATCGCA
AGAATGGTACCGTGTTCGCACGACGTGCGTCGCCGGTGTTGGACGGCTGT
GTCACTGAGACTATGACCACTGAGGAGCAGGAGCTGACGCAGCCGTTCTC
CTTCAGTAGGGATAGTTGCGTGGCTAAGTTTGGATGGTTGAAGGACGTGC
AGGTGTCTGCTGCTTCTTGGATGTGCGAATGTTGGCAGAACGACTTTTAT
GAGGTGAAGCCCGGATGGGCGATTTATGGTATCAAGGGCAACGCCACAGA
GGCGGAGGAGGAATAG
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protein sequence of Gcaud2294.t1

>Gcaud2294.t1 ID=Gcaud2294.t1|Name=Gcaud2294.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=122bp
MLYRAHTHYRRQANATVRCISENERYLNRICNRKNGTVFARRASPVLDGC
VTETMTTEEQELTQPFSFSRDSCVAKFGWLKDVQVSAASWMCECWQNDFY
EVKPGWAIYGIKGNATEAEEE*
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mRNA from alignment at NODE_220_length_36054_cov_4.510163:27489..27956+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2294.t1 ID=Gcaud2294.t1|Name=Gcaud2294.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=468bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:27489..27956+ (Gracilaria caudata M_176_S67 male)
ATGCTTTATCGAGCTCATACGCATTATCGGTAAGGGAGATCGCAACCGCT
ACTCGCTTATTTGAAAGTGTGATGCTCTGGTGGCCAAAGGCGGTACCTTC
ACTGCCGCACCACCTAAACCTGACGATACAGTCGGCAAGCAAACGCAACC
GTGCGCTGCATTTCGGAGAACGAGCGATACTTAAACCGAATCTGTAATCG
CAAGAATGGTACCGTGTTCGCACGACGTGCGTCGCCGGTGTTGGACGGCT
GTGTCACTGAGACTATGACCACTGAGGAGCAGGAGCTGACGCAGCCGTTC
TCCTTCAGTAGGGATAGTTGCGTGGCTAAGTTTGGATGGTTGAAGGACGT
GCAGGTGTCTGCTGCTTCTTGGATGTGCGAATGTTGGCAGAACGACTTTT
ATGAGGTGAAGCCCGGATGGGCGATTTATGGTATCAAGGGCAACGCCACA
GAGGCGGAGGAGGAATAG
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Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:27489..27956+

>Gcaud2294.t1 ID=Gcaud2294.t1|Name=Gcaud2294.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=366bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:27489..27956+ (Gracilaria caudata M_176_S67 male)
ATGCTTTATCGAGCTCATACGCATTATCGTCGGCAAGCAAACGCAACCGT
GCGCTGCATTTCGGAGAACGAGCGATACTTAAACCGAATCTGTAATCGCA
AGAATGGTACCGTGTTCGCACGACGTGCGTCGCCGGTGTTGGACGGCTGT
GTCACTGAGACTATGACCACTGAGGAGCAGGAGCTGACGCAGCCGTTCTC
CTTCAGTAGGGATAGTTGCGTGGCTAAGTTTGGATGGTTGAAGGACGTGC
AGGTGTCTGCTGCTTCTTGGATGTGCGAATGTTGGCAGAACGACTTTTAT
GAGGTGAAGCCCGGATGGGCGATTTATGGTATCAAGGGCAACGCCACAGA
GGCGGAGGAGGAATAG
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