Gcaud2290.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2290.t1
Unique Name	Gcaud2290.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	195

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_220_length_36054_cov_4.510163	contig	NODE_220_length_36054_cov_4.510163:16703..17554 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3983.cassava4.1_015148m
PFAMs	KH_2,Ribosomal_S3_C
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02985
KEGG Pathway	ko03010,map03010
KEGG Module	M00177
Evalue	6.67e-92
EggNOG OGs	COG0092@1\|root,KOG3181@2759\|Eukaryota,37M1Z@33090\|Viridiplantae,3GBVS@35493\|Streptophyta,4JDEI@91835\|fabids
Description	Belongs to the universal ribosomal protein uS3 family
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2290	Gcaud2290	Gracilaria caudata M_176_S67 male	gene	NODE_220_length_36054_cov_4.510163 16703..17554 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2290.t1	Gcaud2290.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_220_length_36054_cov_4.510163 16703..17554 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2290.t1.stop1	Gcaud2290.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_220_length_36054_cov_4.510163 16703..16705 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2290.t1.CDS1	Gcaud2290.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 16703..16999 -
Gcaud2290.t1.CDS2	Gcaud2290.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 17159..17332 -
Gcaud2290.t1.CDS3	Gcaud2290.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 17441..17554 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2290.t1.exon1	Gcaud2290.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 16703..16999 -
Gcaud2290.t1.exon2	Gcaud2290.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 17159..17332 -
Gcaud2290.t1.exon3	Gcaud2290.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 17441..17554 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2290.t1.intron1	Gcaud2290.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_220_length_36054_cov_4.510163 17000..17158 -
Gcaud2290.t1.intron2	Gcaud2290.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_220_length_36054_cov_4.510163 17333..17440 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2290.t1.start1	Gcaud2290.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_220_length_36054_cov_4.510163 17552..17554 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_220_length_36054_cov_4.510163:16703..17554-
coding sequence from alignment at NODE_220_length_36054_cov_4.510163:16703..17554-

mRNA sequence

>Gcaud2290.t1 ID=Gcaud2290.t1|Name=Gcaud2290.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=195bp
MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEKRFAYPENSVEL
FVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSV
SVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKV
MIMLPHDPTGKTGPQKPLPDVINVIEPKEEYTPPPAPITPVPVM*

spliced messenger RNA

>Gcaud2290.t1 ID=Gcaud2290.t1|Name=Gcaud2290.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:16703..17554- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCTCAGATCTCGAAGAAGAAGAAGTTTGTCGCGGATGGTGTCCT
GTTCGCGGAGCTCAATGAGCTCCTCACCCGCGAATTGGCTGAGGAGGGTT
ATTCCGGCGTCGAGAAGCGATTTGCCTATCCGGAAAACTCTGTCGAGCTT
TTCGTAGAGAAGGTGGCGAACCGTGGTCTTTGTGCCATCGCGCAGGCGGA
AAGTCTCAGATATAAGCTTGTCGGTGGCCTGGCTGTCCGGAGAGCATGCT
ACGGTGTTTTGCGGTTCGTCATGGAAAACGGCGCAAAGGGTTGCTCCGTT
TCCGTGTCAGGGAAGCTACGTGCGCAGCGTGCAAAGACCATGAAATTCAG
CGACGGATACATGATTTCATCAGGTAATCCAGTTAAGGATTACGTCGACA
CTGCGTATCGCCATGTGTTGCTGCGACAAGGAGTGCTTGGCATCAAGGTA
ATGATCATGCTTCCGCATGATCCCACTGGCAAGACTGGTCCCCAAAAGCC
GCTCCCAGATGTCATCAACGTTATCGAACCCAAGGAGGAATACACGCCTC
CACCTGCCCCCATCACTCCGGTACCGGTTATGTAA

protein sequence of Gcaud2290.t1

>Gcaud2290.t1 ID=Gcaud2290.t1|Name=Gcaud2290.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=195bp
MAAQISKKKKFVADGVLFAELNELLTRELAEEGYSGVEKRFAYPENSVEL
FVEKVANRGLCAIAQAESLRYKLVGGLAVRRACYGVLRFVMENGAKGCSV
SVSGKLRAQRAKTMKFSDGYMISSGNPVKDYVDTAYRHVLLRQGVLGIKV
MIMLPHDPTGKTGPQKPLPDVINVIEPKEEYTPPPAPITPVPVM*

mRNA from alignment at NODE_220_length_36054_cov_4.510163:16703..17554-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2290.t1 ID=Gcaud2290.t1|Name=Gcaud2290.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=852bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:16703..17554- (Gracilaria caudata M_176_S67 male)
ATGGCGGCTCAGATCTCGAAGAAGAAGAAGTTTGTCGCGGATGGTGTCCT
GTTCGCGGAGCTCAATGAGCTCCTCACCCGCGAATTGGCTGAGGAGGGTT
ATTCCGGCGTCGAGGTTCGTGTGACCCCGTCAAAAACTGAAGTCGTCATC
CGTGCCACCAGAACCCAGTCTGTGCTCGGCGAAAAGGGGCGTCGAATCCG
CGAACTTACTGCTGTTGTACAGAAGCGATTTGCCTATCCGGAAAACTCTG
TCGAGCTTTTCGTAGAGAAGGTGGCGAACCGTGGTCTTTGTGCCATCGCG
CAGGCGGAAAGTCTCAGATATAAGCTTGTCGGTGGCCTGGCTGTCCGGAG
AGCATGCTACGGTGTTTTGCGGTTCGTCATGGAAAACGGCGCAAAGGTAA
GTCCATAGTCTAATACCAAGCTGTACGAACCTACTATTCGTACAAGATCC
AAACCGGGTAATTGTAACGAGCACCCCTGATGCATTTCTCCATGACAGGA
CTTCTGACGGCAAAACACTTGCTTCTGTACTTTCTTCGAAACATTACTTT
ACTAGGGTTGCTCCGTTTCCGTGTCAGGGAAGCTACGTGCGCAGCGTGCA
AAGACCATGAAATTCAGCGACGGATACATGATTTCATCAGGTAATCCAGT
TAAGGATTACGTCGACACTGCGTATCGCCATGTGTTGCTGCGACAAGGAG
TGCTTGGCATCAAGGTAATGATCATGCTTCCGCATGATCCCACTGGCAAG
ACTGGTCCCCAAAAGCCGCTCCCAGATGTCATCAACGTTATCGAACCCAA
GGAGGAATACACGCCTCCACCTGCCCCCATCACTCCGGTACCGGTTATGT
AA

Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:16703..17554-

>Gcaud2290.t1 ID=Gcaud2290.t1|Name=Gcaud2290.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=585bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:16703..17554- (Gracilaria caudata M_176_S67 male)
ATGGCGGCTCAGATCTCGAAGAAGAAGAAGTTTGTCGCGGATGGTGTCCT
GTTCGCGGAGCTCAATGAGCTCCTCACCCGCGAATTGGCTGAGGAGGGTT
ATTCCGGCGTCGAGAAGCGATTTGCCTATCCGGAAAACTCTGTCGAGCTT
TTCGTAGAGAAGGTGGCGAACCGTGGTCTTTGTGCCATCGCGCAGGCGGA
AAGTCTCAGATATAAGCTTGTCGGTGGCCTGGCTGTCCGGAGAGCATGCT
ACGGTGTTTTGCGGTTCGTCATGGAAAACGGCGCAAAGGGTTGCTCCGTT
TCCGTGTCAGGGAAGCTACGTGCGCAGCGTGCAAAGACCATGAAATTCAG
CGACGGATACATGATTTCATCAGGTAATCCAGTTAAGGATTACGTCGACA
CTGCGTATCGCCATGTGTTGCTGCGACAAGGAGTGCTTGGCATCAAGGTA
ATGATCATGCTTCCGCATGATCCCACTGGCAAGACTGGTCCCCAAAAGCC
GCTCCCAGATGTCATCAACGTTATCGAACCCAAGGAGGAATACACGCCTC
CACCTGCCCCCATCACTCCGGTACCGGTTATGTAA