Gcaud2289.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2289.t1
Unique NameGcaud2289.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_220_length_36054_cov_4.510163contigNODE_220_length_36054_cov_4.510163:14770..15324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog985255.APHJ01000018_gene2959
PFAMsNUDIX
Max annot lvl976|Bacteroidetes
KEGG koko:K03574
Evalue1.08e-16
EggNOG OGsCOG1051@1|root,COG1051@2|Bacteria,4NSQ1@976|Bacteroidetes,1I3GH@117743|Flavobacteriia,2P6YX@244698|Gillisia
EC3.6.1.55
DescriptionNUDIX domain
COG categoryF
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2289Gcaud2289Gracilaria caudata M_176_S67 malegeneNODE_220_length_36054_cov_4.510163 14770..15324 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2289.t1.start1Gcaud2289.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_220_length_36054_cov_4.510163 14770..14772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2289.t1.CDS1Gcaud2289.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_220_length_36054_cov_4.510163 14770..15324 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2289.t1.exon1Gcaud2289.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_220_length_36054_cov_4.510163 14770..15324 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2289.t1.stop1Gcaud2289.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_220_length_36054_cov_4.510163 15322..15324 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2289.t1Gcaud2289.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_220_length_36054_cov_4.510163 14770..15324 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2289.t1 ID=Gcaud2289.t1|Name=Gcaud2289.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=185bp
MRGLSAFVLLQVVQPSLGFTQSLKHYPNRLVCTTAGLKPPKLAVSTALFR
KHGTRPEVLLIKRGREPNKGLWSLPGGKVEEHENLQDAALRELLEETAIV
SSHCRILPHPIDIAHVPSQRPAFRIYVFAGICDTDVILKAGDDAADVGFF
RTDEILSLALVDGLENRVLKALDAILDDTNDLNF*
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spliced messenger RNA

>Gcaud2289.t1 ID=Gcaud2289.t1|Name=Gcaud2289.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:14770..15324+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGAGGGCTTTCGGCATTCGTCCTTTTGCAAGTTGTGCAACCTTCTCT
GGGGTTTACTCAGAGTTTGAAACATTACCCAAATCGGTTGGTGTGCACTA
CCGCGGGGTTAAAGCCTCCCAAATTGGCTGTGTCAACAGCGTTGTTTCGC
AAGCACGGAACCCGTCCTGAGGTTCTCCTCATCAAGCGAGGAAGGGAGCC
TAACAAAGGCCTATGGTCACTACCGGGTGGGAAAGTTGAAGAGCACGAAA
ATCTACAAGACGCAGCACTTCGAGAACTTCTTGAGGAAACCGCGATAGTT
TCAAGCCACTGCCGCATTTTGCCGCACCCAATTGATATAGCACATGTTCC
ATCTCAAAGACCTGCGTTTCGCATTTACGTGTTTGCAGGAATATGTGACA
CGGACGTAATTTTGAAGGCCGGAGATGACGCCGCTGATGTTGGATTCTTT
CGAACGGATGAAATCCTTTCTCTGGCTTTGGTGGACGGCCTTGAAAATAG
AGTGCTTAAGGCACTTGATGCCATTCTCGACGACACGAACGACTTAAATT
TTTGA
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protein sequence of Gcaud2289.t1

>Gcaud2289.t1 ID=Gcaud2289.t1|Name=Gcaud2289.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MRGLSAFVLLQVVQPSLGFTQSLKHYPNRLVCTTAGLKPPKLAVSTALFR
KHGTRPEVLLIKRGREPNKGLWSLPGGKVEEHENLQDAALRELLEETAIV
SSHCRILPHPIDIAHVPSQRPAFRIYVFAGICDTDVILKAGDDAADVGFF
RTDEILSLALVDGLENRVLKALDAILDDTNDLNF*
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mRNA from alignment at NODE_220_length_36054_cov_4.510163:14770..15324+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2289.t1 ID=Gcaud2289.t1|Name=Gcaud2289.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:14770..15324+ (Gracilaria caudata M_176_S67 male)
ATGCGAGGGCTTTCGGCATTCGTCCTTTTGCAAGTTGTGCAACCTTCTCT
GGGGTTTACTCAGAGTTTGAAACATTACCCAAATCGGTTGGTGTGCACTA
CCGCGGGGTTAAAGCCTCCCAAATTGGCTGTGTCAACAGCGTTGTTTCGC
AAGCACGGAACCCGTCCTGAGGTTCTCCTCATCAAGCGAGGAAGGGAGCC
TAACAAAGGCCTATGGTCACTACCGGGTGGGAAAGTTGAAGAGCACGAAA
ATCTACAAGACGCAGCACTTCGAGAACTTCTTGAGGAAACCGCGATAGTT
TCAAGCCACTGCCGCATTTTGCCGCACCCAATTGATATAGCACATGTTCC
ATCTCAAAGACCTGCGTTTCGCATTTACGTGTTTGCAGGAATATGTGACA
CGGACGTAATTTTGAAGGCCGGAGATGACGCCGCTGATGTTGGATTCTTT
CGAACGGATGAAATCCTTTCTCTGGCTTTGGTGGACGGCCTTGAAAATAG
AGTGCTTAAGGCACTTGATGCCATTCTCGACGACACGAACGACTTAAATT
TTTGA
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Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:14770..15324+

>Gcaud2289.t1 ID=Gcaud2289.t1|Name=Gcaud2289.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=555bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:14770..15324+ (Gracilaria caudata M_176_S67 male)
ATGCGAGGGCTTTCGGCATTCGTCCTTTTGCAAGTTGTGCAACCTTCTCT
GGGGTTTACTCAGAGTTTGAAACATTACCCAAATCGGTTGGTGTGCACTA
CCGCGGGGTTAAAGCCTCCCAAATTGGCTGTGTCAACAGCGTTGTTTCGC
AAGCACGGAACCCGTCCTGAGGTTCTCCTCATCAAGCGAGGAAGGGAGCC
TAACAAAGGCCTATGGTCACTACCGGGTGGGAAAGTTGAAGAGCACGAAA
ATCTACAAGACGCAGCACTTCGAGAACTTCTTGAGGAAACCGCGATAGTT
TCAAGCCACTGCCGCATTTTGCCGCACCCAATTGATATAGCACATGTTCC
ATCTCAAAGACCTGCGTTTCGCATTTACGTGTTTGCAGGAATATGTGACA
CGGACGTAATTTTGAAGGCCGGAGATGACGCCGCTGATGTTGGATTCTTT
CGAACGGATGAAATCCTTTCTCTGGCTTTGGTGGACGGCCTTGAAAATAG
AGTGCTTAAGGCACTTGATGCCATTCTCGACGACACGAACGACTTAAATT
TTTGA
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