Gcaud2284.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2284.t1
Unique Name	Gcaud2284.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_220_length_36054_cov_4.510163	contig	NODE_220_length_36054_cov_4.510163:4765..5676 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	656024.FsymDg_0880
Preferred name	celA
PFAMs	Glyco_hydro_6
Max annot lvl	201174\|Actinobacteria
KEGG ko	ko:K01179
KEGG Reaction	R06200,R11307,R11308
KEGG Pathway	ko00500,ko01100,map00500,map01100
Evalue	2.3e-54
EggNOG OGs	COG5297@1\|root,COG5297@2\|Bacteria,2GK39@201174\|Actinobacteria,4EV09@85013\|Frankiales
EC	3.2.1.4
Description	Belongs to the glycosyl hydrolase family 6
COG category	G
CAZy	GH5,GH9
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2284	Gcaud2284	Gracilaria caudata M_176_S67 male	gene	NODE_220_length_36054_cov_4.510163 4765..5676 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2284.t1.start1	Gcaud2284.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_220_length_36054_cov_4.510163 4765..4767 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2284.t1.CDS1	Gcaud2284.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_220_length_36054_cov_4.510163 4765..5676 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2284.t1.exon1	Gcaud2284.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_220_length_36054_cov_4.510163 4765..5676 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2284.t1.stop1	Gcaud2284.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_220_length_36054_cov_4.510163 5674..5676 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2284.t1	Gcaud2284.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_220_length_36054_cov_4.510163 4765..5676 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_220_length_36054_cov_4.510163:4765..5676+
coding sequence from alignment at NODE_220_length_36054_cov_4.510163:4765..5676+

mRNA sequence

>Gcaud2284.t1 ID=Gcaud2284.t1|Name=Gcaud2284.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=304bp
MIRNPLAGQELDFVEQQVDRWIRFNREDWRAEIFKTHLANTPVFQWVGDW
IPDIRRHISRIVNNAKANQALFQIVLYNIPNRDAGGFSAGGAASRREYLQ
WIRAVASAIGSAKGILCIEPDALAHAQSFSGSRRENRIQILREVVMLLSR
RCKNAYIYLDVGHPDWLGAGHATELFLDAGGRFAHGISLNVSNSQTSEDC
FRYGLEIVERVSAYHGMIIDTSRNGAGPPPRSLTGTEAWANVPTNRLGMR
PTLRVSTPNIFNNRLHGLLWIKVPGESDGNYRGAPHAGQFWPEGALRLIG
RGT*

spliced messenger RNA

>Gcaud2284.t1 ID=Gcaud2284.t1|Name=Gcaud2284.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:4765..5676+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCGGAATCCCTTGGCTGGACAAGAGCTGGATTTTGTTGAACAGCA
AGTGGATAGATGGATTCGATTTAACAGGGAGGACTGGCGCGCAGAAATTT
TCAAGACTCACCTGGCTAATACACCAGTCTTCCAATGGGTTGGAGATTGG
ATCCCTGACATTCGGCGTCACATATCTCGTATAGTAAACAACGCCAAAGC
AAACCAAGCTCTCTTCCAAATCGTCCTCTACAACATTCCCAACCGTGACG
CAGGGGGCTTTTCAGCTGGTGGAGCAGCTTCCAGAAGGGAATACTTGCAA
TGGATTCGCGCCGTTGCTTCTGCCATCGGTTCAGCGAAAGGCATCCTGTG
CATTGAACCTGACGCCTTGGCTCATGCTCAGAGCTTCTCCGGCTCAAGGA
GGGAAAATCGCATTCAAATTCTGCGTGAAGTGGTGATGCTTCTGTCGCGA
AGATGCAAGAATGCCTACATATATCTGGATGTAGGCCATCCGGATTGGCT
TGGCGCGGGACATGCAACCGAATTGTTTCTGGACGCCGGAGGGCGGTTTG
CACATGGCATAAGCCTAAATGTATCTAATTCTCAGACTTCGGAAGATTGC
TTCAGGTATGGGTTGGAAATCGTGGAACGAGTCTCTGCTTACCATGGGAT
GATAATAGACACATCTAGAAACGGTGCAGGTCCCCCACCGAGGTCTTTGA
CAGGTACCGAAGCATGGGCAAATGTTCCCACCAACCGATTAGGTATGCGT
CCCACACTAAGAGTGAGTACTCCCAACATATTCAACAACCGACTTCACGG
GTTGTTATGGATAAAAGTTCCTGGAGAAAGCGATGGCAACTACCGTGGTG
CACCGCATGCAGGGCAATTTTGGCCTGAGGGAGCTTTAAGGTTGATTGGA
AGAGGCACTTAA

protein sequence of Gcaud2284.t1

>Gcaud2284.t1 ID=Gcaud2284.t1|Name=Gcaud2284.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=304bp
MIRNPLAGQELDFVEQQVDRWIRFNREDWRAEIFKTHLANTPVFQWVGDW
IPDIRRHISRIVNNAKANQALFQIVLYNIPNRDAGGFSAGGAASRREYLQ
WIRAVASAIGSAKGILCIEPDALAHAQSFSGSRRENRIQILREVVMLLSR
RCKNAYIYLDVGHPDWLGAGHATELFLDAGGRFAHGISLNVSNSQTSEDC
FRYGLEIVERVSAYHGMIIDTSRNGAGPPPRSLTGTEAWANVPTNRLGMR
PTLRVSTPNIFNNRLHGLLWIKVPGESDGNYRGAPHAGQFWPEGALRLIG
RGT*

mRNA from alignment at NODE_220_length_36054_cov_4.510163:4765..5676+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2284.t1 ID=Gcaud2284.t1|Name=Gcaud2284.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=912bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:4765..5676+ (Gracilaria caudata M_176_S67 male)
ATGATTCGGAATCCCTTGGCTGGACAAGAGCTGGATTTTGTTGAACAGCA
AGTGGATAGATGGATTCGATTTAACAGGGAGGACTGGCGCGCAGAAATTT
TCAAGACTCACCTGGCTAATACACCAGTCTTCCAATGGGTTGGAGATTGG
ATCCCTGACATTCGGCGTCACATATCTCGTATAGTAAACAACGCCAAAGC
AAACCAAGCTCTCTTCCAAATCGTCCTCTACAACATTCCCAACCGTGACG
CAGGGGGCTTTTCAGCTGGTGGAGCAGCTTCCAGAAGGGAATACTTGCAA
TGGATTCGCGCCGTTGCTTCTGCCATCGGTTCAGCGAAAGGCATCCTGTG
CATTGAACCTGACGCCTTGGCTCATGCTCAGAGCTTCTCCGGCTCAAGGA
GGGAAAATCGCATTCAAATTCTGCGTGAAGTGGTGATGCTTCTGTCGCGA
AGATGCAAGAATGCCTACATATATCTGGATGTAGGCCATCCGGATTGGCT
TGGCGCGGGACATGCAACCGAATTGTTTCTGGACGCCGGAGGGCGGTTTG
CACATGGCATAAGCCTAAATGTATCTAATTCTCAGACTTCGGAAGATTGC
TTCAGGTATGGGTTGGAAATCGTGGAACGAGTCTCTGCTTACCATGGGAT
GATAATAGACACATCTAGAAACGGTGCAGGTCCCCCACCGAGGTCTTTGA
CAGGTACCGAAGCATGGGCAAATGTTCCCACCAACCGATTAGGTATGCGT
CCCACACTAAGAGTGAGTACTCCCAACATATTCAACAACCGACTTCACGG
GTTGTTATGGATAAAAGTTCCTGGAGAAAGCGATGGCAACTACCGTGGTG
CACCGCATGCAGGGCAATTTTGGCCTGAGGGAGCTTTAAGGTTGATTGGA
AGAGGCACTTAA

Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:4765..5676+

>Gcaud2284.t1 ID=Gcaud2284.t1|Name=Gcaud2284.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=912bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:4765..5676+ (Gracilaria caudata M_176_S67 male)
ATGATTCGGAATCCCTTGGCTGGACAAGAGCTGGATTTTGTTGAACAGCA
AGTGGATAGATGGATTCGATTTAACAGGGAGGACTGGCGCGCAGAAATTT
TCAAGACTCACCTGGCTAATACACCAGTCTTCCAATGGGTTGGAGATTGG
ATCCCTGACATTCGGCGTCACATATCTCGTATAGTAAACAACGCCAAAGC
AAACCAAGCTCTCTTCCAAATCGTCCTCTACAACATTCCCAACCGTGACG
CAGGGGGCTTTTCAGCTGGTGGAGCAGCTTCCAGAAGGGAATACTTGCAA
TGGATTCGCGCCGTTGCTTCTGCCATCGGTTCAGCGAAAGGCATCCTGTG
CATTGAACCTGACGCCTTGGCTCATGCTCAGAGCTTCTCCGGCTCAAGGA
GGGAAAATCGCATTCAAATTCTGCGTGAAGTGGTGATGCTTCTGTCGCGA
AGATGCAAGAATGCCTACATATATCTGGATGTAGGCCATCCGGATTGGCT
TGGCGCGGGACATGCAACCGAATTGTTTCTGGACGCCGGAGGGCGGTTTG
CACATGGCATAAGCCTAAATGTATCTAATTCTCAGACTTCGGAAGATTGC
TTCAGGTATGGGTTGGAAATCGTGGAACGAGTCTCTGCTTACCATGGGAT
GATAATAGACACATCTAGAAACGGTGCAGGTCCCCCACCGAGGTCTTTGA
CAGGTACCGAAGCATGGGCAAATGTTCCCACCAACCGATTAGGTATGCGT
CCCACACTAAGAGTGAGTACTCCCAACATATTCAACAACCGACTTCACGG
GTTGTTATGGATAAAAGTTCCTGGAGAAAGCGATGGCAACTACCGTGGTG
CACCGCATGCAGGGCAATTTTGGCCTGAGGGAGCTTTAAGGTTGATTGGA
AGAGGCACTTAA