Gcaud2296.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2296.t1
Unique NameGcaud2296.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length216
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_220_length_36054_cov_4.510163contigNODE_220_length_36054_cov_4.510163:33131..33909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2296Gcaud2296Gracilaria caudata M_176_S67 malegeneNODE_220_length_36054_cov_4.510163 33131..33909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2296.t1Gcaud2296.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_220_length_36054_cov_4.510163 33131..33909 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2296.t1.stop1Gcaud2296.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_220_length_36054_cov_4.510163 33131..33133 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2296.t1.CDS1Gcaud2296.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_220_length_36054_cov_4.510163 33131..33711 -
Gcaud2296.t1.CDS2Gcaud2296.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_220_length_36054_cov_4.510163 33844..33909 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2296.t1.exon1Gcaud2296.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_220_length_36054_cov_4.510163 33131..33711 -
Gcaud2296.t1.exon2Gcaud2296.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_220_length_36054_cov_4.510163 33844..33909 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2296.t1.intron1Gcaud2296.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_220_length_36054_cov_4.510163 33712..33843 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2296.t1 ID=Gcaud2296.t1|Name=Gcaud2296.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=216bp
XPRINHQHKKNPTIAFHHNHHNNNSGQNKRSSSASSSRDHPSTPPHSPEM
TSDKGPKKRSPKPSSSSSHSHASRSNRPSGSSQSSSRHRHSTPSASHQTN
PAASSSSGSMPASSTQQLPNSVRNAPPELRSAIRRKQNNESARRSRERKR
AEEAEMKRRMNENDARIQHLEREVENLTAALLMDEENESGSRSGRRHPNP
PSSPSSNPGFYGDPF*
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spliced messenger RNA

>Gcaud2296.t1 ID=Gcaud2296.t1|Name=Gcaud2296.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=647bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:33131..33909- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CACCACGGATCAACCATCAGCATAAAAAAAATCCTACAATCGCATTTCAC
CACAACCACCACAACAACAACTCTGGGCAAAACAAACGCTCCTCATCTGC
CTCTTCCAGTCGAGATCATCCAAGCACCCCGCCGCATTCCCCCGAAATGA
CCTCCGACAAGGGACCGAAAAAGCGTTCTCCAAAACCATCCTCCTCTTCC
TCTCACTCGCACGCCTCCCGCTCCAATCGTCCCAGCGGCTCGTCCCAGTC
CAGCAGCCGCCACCGTCACTCCACACCTTCCGCCTCCCATCAAACCAACC
CAGCCGCCTCCTCATCCTCCGGTTCCATGCCTGCCAGCTCCACGCAACAA
CTGCCCAACAGCGTGCGAAACGCGCCGCCGGAGCTGCGTAGCGCCATCAG
AAGGAAACAGAACAATGAGAGCGCTCGGAGAAGTCGGGAGCGAAAGAGAG
CGGAGGAGGCGGAAATGAAACGGCGCATGAACGAGAATGATGCGCGTATT
CAACATTTGGAACGCGAGGTGGAAAACCTTACCGCCGCTTTGTTGATGGA
TGAAGAGAATGAGAGTGGTTCGAGATCGGGCAGACGTCACCCAAATCCTC
CGTCTTCGCCGAGCTCTAATCCGGGCTTCTACGGCGACCCGTTCTGA
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protein sequence of Gcaud2296.t1

>Gcaud2296.t1 ID=Gcaud2296.t1|Name=Gcaud2296.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=216bp
XPRINHQHKKNPTIAFHHNHHNNNSGQNKRSSSASSSRDHPSTPPHSPEM
TSDKGPKKRSPKPSSSSSHSHASRSNRPSGSSQSSSRHRHSTPSASHQTN
PAASSSSGSMPASSTQQLPNSVRNAPPELRSAIRRKQNNESARRSRERKR
AEEAEMKRRMNENDARIQHLEREVENLTAALLMDEENESGSRSGRRHPNP
PSSPSSNPGFYGDPF*
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mRNA from alignment at NODE_220_length_36054_cov_4.510163:33131..33909-

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2296.t1 ID=Gcaud2296.t1|Name=Gcaud2296.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=779bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:33131..33909- (Gracilaria caudata M_176_S67 male)
CACCACGGATCAACCATCAGCATAAAAAAAATCCTACAATCGCATTTCAC
CACAACCACCACAACAGTGAGTTCAAACCTCATCGTTCCACTCCCGCGCC
CGCTCTCATCCCACCCCCTCTCGTAGCCCAATTCATCTCCTCCCCTCTCC
CCAGGCCAGCTCTCAACTAACCTCCTCTCGTCATCATGTCTTCTTCAGAC
AACTCTGGGCAAAACAAACGCTCCTCATCTGCCTCTTCCAGTCGAGATCA
TCCAAGCACCCCGCCGCATTCCCCCGAAATGACCTCCGACAAGGGACCGA
AAAAGCGTTCTCCAAAACCATCCTCCTCTTCCTCTCACTCGCACGCCTCC
CGCTCCAATCGTCCCAGCGGCTCGTCCCAGTCCAGCAGCCGCCACCGTCA
CTCCACACCTTCCGCCTCCCATCAAACCAACCCAGCCGCCTCCTCATCCT
CCGGTTCCATGCCTGCCAGCTCCACGCAACAACTGCCCAACAGCGTGCGA
AACGCGCCGCCGGAGCTGCGTAGCGCCATCAGAAGGAAACAGAACAATGA
GAGCGCTCGGAGAAGTCGGGAGCGAAAGAGAGCGGAGGAGGCGGAAATGA
AACGGCGCATGAACGAGAATGATGCGCGTATTCAACATTTGGAACGCGAG
GTGGAAAACCTTACCGCCGCTTTGTTGATGGATGAAGAGAATGAGAGTGG
TTCGAGATCGGGCAGACGTCACCCAAATCCTCCGTCTTCGCCGAGCTCTA
ATCCGGGCTTCTACGGCGACCCGTTCTGA
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Coding sequence (CDS) from alignment at NODE_220_length_36054_cov_4.510163:33131..33909-

>Gcaud2296.t1 ID=Gcaud2296.t1|Name=Gcaud2296.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=647bp|location=Sequence derived from alignment at NODE_220_length_36054_cov_4.510163:33131..33909- (Gracilaria caudata M_176_S67 male)
CACCACGGATCAACCATCAGCATAAAAAAAATCCTACAATCGCATTTCAC
CACAACCACCACAACAACAACTCTGGGCAAAACAAACGCTCCTCATCTGC
CTCTTCCAGTCGAGATCATCCAAGCACCCCGCCGCATTCCCCCGAAATGA
CCTCCGACAAGGGACCGAAAAAGCGTTCTCCAAAACCATCCTCCTCTTCC
TCTCACTCGCACGCCTCCCGCTCCAATCGTCCCAGCGGCTCGTCCCAGTC
CAGCAGCCGCCACCGTCACTCCACACCTTCCGCCTCCCATCAAACCAACC
CAGCCGCCTCCTCATCCTCCGGTTCCATGCCTGCCAGCTCCACGCAACAA
CTGCCCAACAGCGTGCGAAACGCGCCGCCGGAGCTGCGTAGCGCCATCAG
AAGGAAACAGAACAATGAGAGCGCTCGGAGAAGTCGGGAGCGAAAGAGAG
CGGAGGAGGCGGAAATGAAACGGCGCATGAACGAGAATGATGCGCGTATT
CAACATTTGGAACGCGAGGTGGAAAACCTTACCGCCGCTTTGTTGATGGA
TGAAGAGAATGAGAGTGGTTCGAGATCGGGCAGACGTCACCCAAATCCTC
CGTCTTCGCCGAGCTCTAATCCGGGCTTCTACGGCGACCCGTTCTGA
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