Gcaud4082.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud4082.t1
Unique Name	Gcaud4082.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	197

Homology

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BLAST of Gcaud4082.t1 vs. uniprot
Match: R7QMD5_CHOCR (Chromosome segregation protein SMC, ParB family n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMD5_CHOCR)

HSP 1 Score: 73.2 bits (178), Expect = 1.930e-12
Identity = 44/156 (28.21%), Postives = 84/156 (53.85%), Query Frame = 0

Query:   11 KRGEDIEDLERKNQFWIKAARKAHEAVNDNSSLQEQQRSIEDLEQLKQELLDALVKGKNENVELQEKVRELQGPMQHLEHFNRHVHQKEHSEVPTNKFTLKVLKLLSAAYLQDDGDSKVFKGFFTNPKTNDVIPFKYNEEVPEAERVEEVWDTLSE 166
            +R E I +L      W+    KA +   +  SL ++QR ++ +E  +++L+  ++ G  E   L++K  +L+  + HLE     + +K+  E+PT  F  K+   +SA  +    DS + +GF +  +  +V+PF+Y+   P  ERV ++W+ +SE
Sbjct:   69 ERTERITELRDLLSEWVARTEKAKKQSENVESLFDRQRYVQQMEAEREDLIQEILAGTEETGRLEQKNDDLKEKLAHLEQIAESLKKKKKEEIPTYLFLRKIFCQVSATKIVTS-DSDLLEGFVSKSERKEVLPFRYDRTKPTFERVNDLWNKISE 223

The following BLAST results are available for this feature:

BLAST of Gcaud4082.t1 vs. uniprot

BLAST of Gcaud4082.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
R7QMD5_CHOCR	1.930e-12	28.21	Chromosome segregation protein SMC, ParB family n=...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	COILS	Coil	Coil	coord: 43..77
None	No IPR available	COILS	Coil	Coil	coord: 190..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..196

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_21_length_76236_cov_4.890459	contig	NODE_21_length_76236_cov_4.890459:5981..6571 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud4082.t1	Gcaud4082.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_21_length_76236_cov_4.890459 5981..6571 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud4082.t1 ID=Gcaud4082.t1|Name=Gcaud4082.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
IGDDKHDIDCKRGEDIEDLERKNQFWIKAARKAHEAVNDNSSLQEQQRSI
EDLEQLKQELLDALVKGKNENVELQEKVRELQGPMQHLEHFNRHVHQKEH
SEVPTNKFTLKVLKLLSAAYLQDDGDSKVFKGFFTNPKTNDVIPFKYNEE
VPEAERVEEVWDTLSEIIDVDPKNGRQVKTRQSWEESGDLQTMRGT*