Gcaud4082.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud4082.t1
Unique NameGcaud4082.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_21_length_76236_cov_4.890459contigNODE_21_length_76236_cov_4.890459:5981..6571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud4082Gcaud4082Gracilaria caudata M_176_S67 malegeneNODE_21_length_76236_cov_4.890459 5981..6571 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4082.t1.stop1Gcaud4082.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_21_length_76236_cov_4.890459 5981..5983 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4082.t1.CDS1Gcaud4082.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_21_length_76236_cov_4.890459 5981..6571 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4082.t1.exon1Gcaud4082.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_21_length_76236_cov_4.890459 5981..6571 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4082.t1.start1Gcaud4082.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_21_length_76236_cov_4.890459 6731..6733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud4082.t1Gcaud4082.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_21_length_76236_cov_4.890459 5981..6571 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud4082.t1 ID=Gcaud4082.t1|Name=Gcaud4082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=197bp
IGDDKHDIDCKRGEDIEDLERKNQFWIKAARKAHEAVNDNSSLQEQQRSI
EDLEQLKQELLDALVKGKNENVELQEKVRELQGPMQHLEHFNRHVHQKEH
SEVPTNKFTLKVLKLLSAAYLQDDGDSKVFKGFFTNPKTNDVIPFKYNEE
VPEAERVEEVWDTLSEIIDVDPKNGRQVKTRQSWEESGDLQTMRGT*
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spliced messenger RNA

>Gcaud4082.t1 ID=Gcaud4082.t1|Name=Gcaud4082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_21_length_76236_cov_4.890459:5981..6571- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATCGGAGATGATAAACACGACATTGATTGCAAAAGGGGTGAAGATATTGA
GGACTTAGAACGGAAGAATCAATTTTGGATTAAAGCTGCGAGAAAGGCTC
ACGAAGCAGTGAATGACAACTCTTCACTACAAGAACAACAAAGGTCAATT
GAAGATCTTGAGCAGCTCAAGCAAGAGTTGTTGGATGCGCTCGTTAAGGG
CAAAAATGAAAATGTTGAACTTCAAGAAAAGGTTAGGGAGCTTCAAGGAC
CTATGCAACATCTTGAACACTTTAACCGTCATGTGCACCAAAAAGAACAC
TCCGAAGTTCCAACCAACAAATTTACTCTGAAGGTGCTAAAGTTGTTATC
GGCAGCTTACTTGCAGGATGATGGGGATTCAAAAGTCTTCAAAGGATTCT
TCACTAATCCTAAGACGAATGACGTGATTCCTTTCAAATACAATGAAGAA
GTGCCCGAAGCTGAGCGTGTAGAAGAGGTATGGGATACACTTTCAGAAAT
CATAGATGTCGACCCAAAAAATGGTCGCCAGGTCAAGACGCGACAGTCAT
GGGAGGAGAGTGGGGACTTGCAAACAATGCGCGGAACATAG
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protein sequence of Gcaud4082.t1

>Gcaud4082.t1 ID=Gcaud4082.t1|Name=Gcaud4082.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=197bp
IGDDKHDIDCKRGEDIEDLERKNQFWIKAARKAHEAVNDNSSLQEQQRSI
EDLEQLKQELLDALVKGKNENVELQEKVRELQGPMQHLEHFNRHVHQKEH
SEVPTNKFTLKVLKLLSAAYLQDDGDSKVFKGFFTNPKTNDVIPFKYNEE
VPEAERVEEVWDTLSEIIDVDPKNGRQVKTRQSWEESGDLQTMRGT*
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mRNA from alignment at NODE_21_length_76236_cov_4.890459:5981..6571-

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud4082.t1 ID=Gcaud4082.t1|Name=Gcaud4082.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=591bp|location=Sequence derived from alignment at NODE_21_length_76236_cov_4.890459:5981..6571- (Gracilaria caudata M_176_S67 male)
ATCGGAGATGATAAACACGACATTGATTGCAAAAGGGGTGAAGATATTGA
GGACTTAGAACGGAAGAATCAATTTTGGATTAAAGCTGCGAGAAAGGCTC
ACGAAGCAGTGAATGACAACTCTTCACTACAAGAACAACAAAGGTCAATT
GAAGATCTTGAGCAGCTCAAGCAAGAGTTGTTGGATGCGCTCGTTAAGGG
CAAAAATGAAAATGTTGAACTTCAAGAAAAGGTTAGGGAGCTTCAAGGAC
CTATGCAACATCTTGAACACTTTAACCGTCATGTGCACCAAAAAGAACAC
TCCGAAGTTCCAACCAACAAATTTACTCTGAAGGTGCTAAAGTTGTTATC
GGCAGCTTACTTGCAGGATGATGGGGATTCAAAAGTCTTCAAAGGATTCT
TCACTAATCCTAAGACGAATGACGTGATTCCTTTCAAATACAATGAAGAA
GTGCCCGAAGCTGAGCGTGTAGAAGAGGTATGGGATACACTTTCAGAAAT
CATAGATGTCGACCCAAAAAATGGTCGCCAGGTCAAGACGCGACAGTCAT
GGGAGGAGAGTGGGGACTTGCAAACAATGCGCGGAACATAG
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Coding sequence (CDS) from alignment at NODE_21_length_76236_cov_4.890459:5981..6571-

>Gcaud4082.t1 ID=Gcaud4082.t1|Name=Gcaud4082.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=591bp|location=Sequence derived from alignment at NODE_21_length_76236_cov_4.890459:5981..6571- (Gracilaria caudata M_176_S67 male)
ATCGGAGATGATAAACACGACATTGATTGCAAAAGGGGTGAAGATATTGA
GGACTTAGAACGGAAGAATCAATTTTGGATTAAAGCTGCGAGAAAGGCTC
ACGAAGCAGTGAATGACAACTCTTCACTACAAGAACAACAAAGGTCAATT
GAAGATCTTGAGCAGCTCAAGCAAGAGTTGTTGGATGCGCTCGTTAAGGG
CAAAAATGAAAATGTTGAACTTCAAGAAAAGGTTAGGGAGCTTCAAGGAC
CTATGCAACATCTTGAACACTTTAACCGTCATGTGCACCAAAAAGAACAC
TCCGAAGTTCCAACCAACAAATTTACTCTGAAGGTGCTAAAGTTGTTATC
GGCAGCTTACTTGCAGGATGATGGGGATTCAAAAGTCTTCAAAGGATTCT
TCACTAATCCTAAGACGAATGACGTGATTCCTTTCAAATACAATGAAGAA
GTGCCCGAAGCTGAGCGTGTAGAAGAGGTATGGGATACACTTTCAGAAAT
CATAGATGTCGACCCAAAAAATGGTCGCCAGGTCAAGACGCGACAGTCAT
GGGAGGAGAGTGGGGACTTGCAAACAATGCGCGGAACATAG
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