Gcaud9345.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9345.t1
Unique Name	Gcaud9345.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	487

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2185_length_6534_cov_3.538414	contig	NODE_2185_length_6534_cov_3.538414:5..1465 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3055.EDP05922
Max annot lvl	3041\|Chlorophyta
Evalue	2.69e-06
EggNOG OGs	KOG1595@1\|root,KOG1595@2759\|Eukaryota,37ZJ4@33090\|Viridiplantae,34KPX@3041\|Chlorophyta
Description	DNA binding
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9345	Gcaud9345	Gracilaria caudata M_176_S67 male	gene	NODE_2185_length_6534_cov_3.538414 5..1465 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9345.t1.start1	Gcaud9345.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2185_length_6534_cov_3.538414 5..7 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9345.t1.CDS1	Gcaud9345.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2185_length_6534_cov_3.538414 5..1465 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9345.t1.exon1	Gcaud9345.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2185_length_6534_cov_3.538414 5..1465 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9345.t1.stop1	Gcaud9345.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2185_length_6534_cov_3.538414 1463..1465 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9345.t1	Gcaud9345.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2185_length_6534_cov_3.538414 5..1465 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2185_length_6534_cov_3.538414:5..1465+
coding sequence from alignment at NODE_2185_length_6534_cov_3.538414:5..1465+

mRNA sequence

>Gcaud9345.t1 ID=Gcaud9345.t1|Name=Gcaud9345.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=487bp
MTTAQPHRTSADLPPIAAPPTAMASTRHPSVWPASPPVPRRVPPIAVPSL
DPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDFT
PAPAPFRAGLFAPPRKDGIAAIAAPHHHTPPHSAQPAQQAQDFPRMFKVY
PCRTRDQCLAAGTAPDCFYYHSPRTDRRRANVSMYKPHMCRFIDDASGCR
KADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQ
VSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAKKHSGWRLQG
FDPRGRDDQKIKFVGARVDQVKRTLKVAGEKKWASTLKTSSLRDMMSGVR
KVAEEVRERCRADERYGATATDGGSQEVHRLIRAIFSNTNWSCHSQEGDN
PFLVTPENQNDAMTALEKLVHIVVMCNRDKQAALSNVENNGAAHNKTNST
TACADKNREGGAREVQPANVVSTLWACPSSLGQLTA*

spliced messenger RNA

>Gcaud9345.t1 ID=Gcaud9345.t1|Name=Gcaud9345.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at NODE_2185_length_6534_cov_3.538414:5..1465+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACAGCccaaccccaccgcacctccgccgatctgccgcccatcgc
cgcccccccaaccgccatggcctccacccgccacccgTCTGTGTGGCCCG
CCTCGCCGCCCGTTCCCCGTCGCGTCCCCCCAATCGCCGTGCCCTCTCTC
GACCCACCGCCCGCAATCACCTCCTCTTCCGTCTCCAGCCCGTCCGCCCC
GCACTCGGACGGCCCCGACGAAGTGGACGAGCTCCTCGACGGCATCGATC
GCGTGCGCATCGACGACCTGTGGCAGACGCCTCGTCACCTCGACTTCACC
CCTGCGCCCGCCCCGTTCCGCGCCGGTCTCTTCGCCCCGCCCCGTAAGGA
TGGCATCGCCGCCATTGCCGCTCCCCACCACCACACTCCTCCGCACTCCG
CGCAACCCGCGCAGCAGGCTCAAGACTTTCCTCGCATGTTCAAAGTGTAT
CCGTGTCGTACACGTGATCAATGTCTTGCTGCCGGCACCGCACCGGATTG
TTTCTACTATCATTCTCCGCGTACTGATCGCCGTCGTGCTAACGTGTCCA
TGTACAAGCCGCACATGTGCCGTTTTATCGACGACGCCTCCGGCTGTCGC
AAGGCCGACCGCTGTCCGTTCTCGCACAACGACTTTGAGCGTCGTTACCA
CCCCGACCGCTTCGGCAAGGAGACGTGTCGCGACTATCTTCGCGGGGACT
GTCCACGTCGTTACTGCACGTTTCGTCATGAGGTGTCTTCCAACGTGCAG
GTGTCGCTGCTACACATGCAGCAAATGAGCGACAAGGAGTTGCTACAGCT
GGTGCTCAAGATCCCCGAGGCTCAGGGACGCGCGCTGTGCGAAAAGCTAT
TGCGTCGTTTTGGGCACGCTAAGAAGCACTCTGGCTGGCGTCTACAGGGC
TTCGACCCGCGCGGACGCGATGACCAGAAGATCAAGTTTGTGGGCGCGCG
AGTGGACCAGGTGAAGCGCACGCTCAAGGTGGCGGGGGAGAAGAAATGGG
CGTCCACGCTCAAGACGTCCAGCCTGCGTGACATGATGAGCGGCGTGCGT
AAGGTGGCCGAGGAGGTTCGTGAACGCTGTCGCGCCGATGAACGTTACGG
GGCGACGGCCACTGACGGCGGTTCGCAGGAGGTGCATCGGCTGATTCGCG
CCATTTTCTCCAACACTAACTGGAGCTGTCACTCGCAAGAGGGAGATAAT
CCGTTCCTGGTCACACCGGAGAACCAAAACGATGCTATGACTGCGTTGGA
GAAACTGGTGCATATCGTTGTGATGTGCAACCGCGACAAGCAAGCTGCGT
TGAGCAATGTGGAGAATAACGGCGCTGCGCACAACAAGACTAACAGCACG
ACCGCGTGTGCGGACAAGAACAGGGAGGGCGGCGCGCGCGAAGTGCAGCC
GGCGAACGTGGTGTCGACTCTATGGGCGTGCCCGTCGTCGCTGGGTCAGC
TGACTGCATGA

protein sequence of Gcaud9345.t1

>Gcaud9345.t1 ID=Gcaud9345.t1|Name=Gcaud9345.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=487bp
MTTAQPHRTSADLPPIAAPPTAMASTRHPSVWPASPPVPRRVPPIAVPSL
DPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDFT
PAPAPFRAGLFAPPRKDGIAAIAAPHHHTPPHSAQPAQQAQDFPRMFKVY
PCRTRDQCLAAGTAPDCFYYHSPRTDRRRANVSMYKPHMCRFIDDASGCR
KADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQ
VSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAKKHSGWRLQG
FDPRGRDDQKIKFVGARVDQVKRTLKVAGEKKWASTLKTSSLRDMMSGVR
KVAEEVRERCRADERYGATATDGGSQEVHRLIRAIFSNTNWSCHSQEGDN
PFLVTPENQNDAMTALEKLVHIVVMCNRDKQAALSNVENNGAAHNKTNST
TACADKNREGGAREVQPANVVSTLWACPSSLGQLTA*

mRNA from alignment at NODE_2185_length_6534_cov_3.538414:5..1465+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9345.t1 ID=Gcaud9345.t1|Name=Gcaud9345.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at NODE_2185_length_6534_cov_3.538414:5..1465+ (Gracilaria caudata M_176_S67 male)
ATGACCACAGCccaaccccaccgcacctccgccgatctgccgcccatcgc
cgcccccccaaccgccatggcctccacccgccacccgTCTGTGTGGCCCG
CCTCGCCGCCCGTTCCCCGTCGCGTCCCCCCAATCGCCGTGCCCTCTCTC
GACCCACCGCCCGCAATCACCTCCTCTTCCGTCTCCAGCCCGTCCGCCCC
GCACTCGGACGGCCCCGACGAAGTGGACGAGCTCCTCGACGGCATCGATC
GCGTGCGCATCGACGACCTGTGGCAGACGCCTCGTCACCTCGACTTCACC
CCTGCGCCCGCCCCGTTCCGCGCCGGTCTCTTCGCCCCGCCCCGTAAGGA
TGGCATCGCCGCCATTGCCGCTCCCCACCACCACACTCCTCCGCACTCCG
CGCAACCCGCGCAGCAGGCTCAAGACTTTCCTCGCATGTTCAAAGTGTAT
CCGTGTCGTACACGTGATCAATGTCTTGCTGCCGGCACCGCACCGGATTG
TTTCTACTATCATTCTCCGCGTACTGATCGCCGTCGTGCTAACGTGTCCA
TGTACAAGCCGCACATGTGCCGTTTTATCGACGACGCCTCCGGCTGTCGC
AAGGCCGACCGCTGTCCGTTCTCGCACAACGACTTTGAGCGTCGTTACCA
CCCCGACCGCTTCGGCAAGGAGACGTGTCGCGACTATCTTCGCGGGGACT
GTCCACGTCGTTACTGCACGTTTCGTCATGAGGTGTCTTCCAACGTGCAG
GTGTCGCTGCTACACATGCAGCAAATGAGCGACAAGGAGTTGCTACAGCT
GGTGCTCAAGATCCCCGAGGCTCAGGGACGCGCGCTGTGCGAAAAGCTAT
TGCGTCGTTTTGGGCACGCTAAGAAGCACTCTGGCTGGCGTCTACAGGGC
TTCGACCCGCGCGGACGCGATGACCAGAAGATCAAGTTTGTGGGCGCGCG
AGTGGACCAGGTGAAGCGCACGCTCAAGGTGGCGGGGGAGAAGAAATGGG
CGTCCACGCTCAAGACGTCCAGCCTGCGTGACATGATGAGCGGCGTGCGT
AAGGTGGCCGAGGAGGTTCGTGAACGCTGTCGCGCCGATGAACGTTACGG
GGCGACGGCCACTGACGGCGGTTCGCAGGAGGTGCATCGGCTGATTCGCG
CCATTTTCTCCAACACTAACTGGAGCTGTCACTCGCAAGAGGGAGATAAT
CCGTTCCTGGTCACACCGGAGAACCAAAACGATGCTATGACTGCGTTGGA
GAAACTGGTGCATATCGTTGTGATGTGCAACCGCGACAAGCAAGCTGCGT
TGAGCAATGTGGAGAATAACGGCGCTGCGCACAACAAGACTAACAGCACG
ACCGCGTGTGCGGACAAGAACAGGGAGGGCGGCGCGCGCGAAGTGCAGCC
GGCGAACGTGGTGTCGACTCTATGGGCGTGCCCGTCGTCGCTGGGTCAGC
TGACTGCATGA

Coding sequence (CDS) from alignment at NODE_2185_length_6534_cov_3.538414:5..1465+

>Gcaud9345.t1 ID=Gcaud9345.t1|Name=Gcaud9345.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1461bp|location=Sequence derived from alignment at NODE_2185_length_6534_cov_3.538414:5..1465+ (Gracilaria caudata M_176_S67 male)
ATGACCACAGCccaaccccaccgcacctccgccgatctgccgcccatcgc
cgcccccccaaccgccatggcctccacccgccacccgTCTGTGTGGCCCG
CCTCGCCGCCCGTTCCCCGTCGCGTCCCCCCAATCGCCGTGCCCTCTCTC
GACCCACCGCCCGCAATCACCTCCTCTTCCGTCTCCAGCCCGTCCGCCCC
GCACTCGGACGGCCCCGACGAAGTGGACGAGCTCCTCGACGGCATCGATC
GCGTGCGCATCGACGACCTGTGGCAGACGCCTCGTCACCTCGACTTCACC
CCTGCGCCCGCCCCGTTCCGCGCCGGTCTCTTCGCCCCGCCCCGTAAGGA
TGGCATCGCCGCCATTGCCGCTCCCCACCACCACACTCCTCCGCACTCCG
CGCAACCCGCGCAGCAGGCTCAAGACTTTCCTCGCATGTTCAAAGTGTAT
CCGTGTCGTACACGTGATCAATGTCTTGCTGCCGGCACCGCACCGGATTG
TTTCTACTATCATTCTCCGCGTACTGATCGCCGTCGTGCTAACGTGTCCA
TGTACAAGCCGCACATGTGCCGTTTTATCGACGACGCCTCCGGCTGTCGC
AAGGCCGACCGCTGTCCGTTCTCGCACAACGACTTTGAGCGTCGTTACCA
CCCCGACCGCTTCGGCAAGGAGACGTGTCGCGACTATCTTCGCGGGGACT
GTCCACGTCGTTACTGCACGTTTCGTCATGAGGTGTCTTCCAACGTGCAG
GTGTCGCTGCTACACATGCAGCAAATGAGCGACAAGGAGTTGCTACAGCT
GGTGCTCAAGATCCCCGAGGCTCAGGGACGCGCGCTGTGCGAAAAGCTAT
TGCGTCGTTTTGGGCACGCTAAGAAGCACTCTGGCTGGCGTCTACAGGGC
TTCGACCCGCGCGGACGCGATGACCAGAAGATCAAGTTTGTGGGCGCGCG
AGTGGACCAGGTGAAGCGCACGCTCAAGGTGGCGGGGGAGAAGAAATGGG
CGTCCACGCTCAAGACGTCCAGCCTGCGTGACATGATGAGCGGCGTGCGT
AAGGTGGCCGAGGAGGTTCGTGAACGCTGTCGCGCCGATGAACGTTACGG
GGCGACGGCCACTGACGGCGGTTCGCAGGAGGTGCATCGGCTGATTCGCG
CCATTTTCTCCAACACTAACTGGAGCTGTCACTCGCAAGAGGGAGATAAT
CCGTTCCTGGTCACACCGGAGAACCAAAACGATGCTATGACTGCGTTGGA
GAAACTGGTGCATATCGTTGTGATGTGCAACCGCGACAAGCAAGCTGCGT
TGAGCAATGTGGAGAATAACGGCGCTGCGCACAACAAGACTAACAGCACG
ACCGCGTGTGCGGACAAGAACAGGGAGGGCGGCGCGCGCGAAGTGCAGCC
GGCGAACGTGGTGTCGACTCTATGGGCGTGCCCGTCGTCGCTGGGTCAGC
TGACTGCATGA