Gcaud9345.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud9345.t1
Unique Name	Gcaud9345.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	487

Homology

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BLAST of Gcaud9345.t1 vs. uniprot
Match: A0A2V3IK91_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IK91_9FLOR)

HSP 1 Score: 690 bits (1780), Expect = 2.810e-246
Identity = 352/480 (73.33%), Postives = 381/480 (79.38%), Query Frame = 0

Query:   50 LDPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDFTPAPAPFRAGLFAPPRKDGIAAIAAPHHHTPPHSAQPAQQ------------------AQDFPRMFKVYPCRTRDQCLAAGTAPDCFYYHSPRTDRRRANVSMYKPHMCRFIDDASGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVGARVDQVKRTLKVAGEKKWASTLKTSSLRDMMSGVRKVAEEVRERCRADERYGATATDGGSQEVHRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMTALEKLVHIVVMC---NRDKQAALSNVENNGAAHNKTNSTTACADKNREGG----------------------AREVQPANVVSTLWACPSSLGQLTA 486
            +DPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDF P PAPFRAGLFAPPRKDGIAAIAAP +                                DFPR+FKVYPCRTR+QCLAAGTAPDCF+YHS  TDRRR NVS+YKPHMCRFIDDA+GCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVS++VQ+SL HM QMSDKELLQLVLK+PEAQGRALCEKLLRRFGHAKKHSGW+LQGFDPRGR++QK++FV ARV+QVKR+LK AGEKKWA TLKTSSLRDMMSGVRKVAEEVRERCRADERYGA+ +DGGSQEV RLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAM+ALEKLVHIVV     N    AA +N  +     N  +S +      ++ G                      A + Q  +VVSTLWACPSSLG LTA
Sbjct:    1 MDPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDFIPTPAPFRAGLFAPPRKDGIAAIAAPTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTTHDFPRLFKVYPCRTREQCLAAGTAPDCFFYHSTNTDRRRLNVSLYKPHMCRFIDDAAGCRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSTHVQMSLAHMHQMSDKELLQLVLKMPEAQGRALCEKLLRRFGHAKKHSGWKLQGFDPRGREEQKVRFVTARVEQVKRSLKAAGEKKWACTLKTSSLRDMMSGVRKVAEEVRERCRADERYGASGSDGGSQEVQRLIRAIFSNTNWSCHSQEGDNPFLVTPENQNDAMSALEKLVHIVVRSHSNNDSNHAAGANTNDENVVKNANDSNSNMERSTKKVGVTXXXXXXXXXXXRSDGWSKAAAAQAQRHDVVSTLWACPSSLGHLTA 480

[Close]

BLAST of Gcaud9345.t1 vs. uniprot
Match: A0A1X6NIT3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIT3_PORUM)

HSP 1 Score: 157 bits (396), Expect = 7.950e-41
Identity = 95/248 (38.31%), Postives = 134/248 (54.03%), Query Frame = 0

Query:  199 CRKADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQVSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAKKHSGWRLQGFDPRGRDDQKIKFVGARVDQVKRTLKVAGEKKWASTLKTSSLRDMMSGVRKVAEEVRERCRADERYGATATDGG------------------------SQEVHRLIRAIFSNTNWSCHSQE---GDNPFLVTPENQNDAMTALEKL 419
            CR  D C  +HN +E R+HP R  + TCRD+++G C R YC++ HEV   V   L   + + ++E +Q VL++PEA   ++ +KL RR   +K+++GW L+G   R  DD     +  RV  VK  L+ AG  K AS LKT++LRDMM+ VRKVAEEVRE  R                                     S  +  L+R IF+NTNWS H++E    D PF V+  NQ+DA+  LE++
Sbjct:    6 CRFGDGCHHAHNRWEVRFHPSRVHQTTCRDWIKGACARSYCSYVHEVEPKVSSFLTLWESLDEREQVQAVLRMPEAMAASMMQKLQRRAAGSKRNNGWVLEGMTRRP-DDPVFVGLATRVGIVKARLRSAGHTKLASLLKTTTLRDMMNSVRKVAEEVRESGRGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSGSMQSLVRGIFTNTNWSMHAEEHGESDTPFRVSGANQSDAVAKLERV 252

The following BLAST results are available for this feature:

BLAST of Gcaud9345.t1 vs. uniprot

BLAST of Gcaud9345.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IK91_9FLOR	2.810e-246	73.33	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A1X6NIT3_PORUM	7.950e-41	38.31	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 184..211 e-value: 0.31 score: 20.1 coord: 220..245 e-value: 0.58 score: 18.2
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 220..246 score: 10.877837
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 184..212 score: 10.361437
None	No IPR available	GENE3D	3.30.1370.210		coord: 183..249 e-value: 5.0E-8 score: 34.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 32..51
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 181..216

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2185_length_6534_cov_3.538414	contig	NODE_2185_length_6534_cov_3.538414:5..1465 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9345.t1	Gcaud9345.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_2185_length_6534_cov_3.538414 5..1465 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud9345.t1 ID=Gcaud9345.t1|Name=Gcaud9345.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=487bp
MTTAQPHRTSADLPPIAAPPTAMASTRHPSVWPASPPVPRRVPPIAVPSL
DPPPAITSSSVSSPSAPHSDGPDEVDELLDGIDRVRIDDLWQTPRHLDFT
PAPAPFRAGLFAPPRKDGIAAIAAPHHHTPPHSAQPAQQAQDFPRMFKVY
PCRTRDQCLAAGTAPDCFYYHSPRTDRRRANVSMYKPHMCRFIDDASGCR
KADRCPFSHNDFERRYHPDRFGKETCRDYLRGDCPRRYCTFRHEVSSNVQ
VSLLHMQQMSDKELLQLVLKIPEAQGRALCEKLLRRFGHAKKHSGWRLQG
FDPRGRDDQKIKFVGARVDQVKRTLKVAGEKKWASTLKTSSLRDMMSGVR
KVAEEVRERCRADERYGATATDGGSQEVHRLIRAIFSNTNWSCHSQEGDN
PFLVTPENQNDAMTALEKLVHIVVMCNRDKQAALSNVENNGAAHNKTNST
TACADKNREGGAREVQPANVVSTLWACPSSLGQLTA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000571	Znf_CCCH
IPR036855	Znf_CCCH_sf