Gcaud2241.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2241.t1
Unique Name	Gcaud2241.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2174_length_6571_cov_4.069753	contig	NODE_2174_length_6571_cov_4.069753:3535..4671 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2241	Gcaud2241	Gracilaria caudata M_176_S67 male	gene	NODE_2174_length_6571_cov_4.069753 3535..4671 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2241.t1.start1	Gcaud2241.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2174_length_6571_cov_4.069753 3535..3537 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2241.t1.CDS1	Gcaud2241.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2174_length_6571_cov_4.069753 3535..4671 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2241.t1.exon1	Gcaud2241.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2174_length_6571_cov_4.069753 3535..4671 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2241.t1.stop1	Gcaud2241.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2174_length_6571_cov_4.069753 4669..4671 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2241.t1	Gcaud2241.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2174_length_6571_cov_4.069753 3535..4671 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2174_length_6571_cov_4.069753:3535..4671+
coding sequence from alignment at NODE_2174_length_6571_cov_4.069753:3535..4671+

mRNA sequence

>Gcaud2241.t1 ID=Gcaud2241.t1|Name=Gcaud2241.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=379bp
MSAPPFYAPVALRHDLRTLGHPSPDEPTLLVCHGKPRLDLLRWLARRIDA
DASVEDADQLSQFWGALGIQSEPPNQKGVRFPLTAAPQRARDRAAAAAFL
RACIDLTFAFERRKDDLEQSALCEPTEETEHNDAAPFSDADVAMFEQTAS
LIQDRHLLFPSTTRLLDAAPKRKPLSKRPALGANKPARQFDANKPSQSHL
SAKTQQKQPPLISREKILNQLRTLQRETVELKQALKSSDPPVEIESDTED
EESEQVEAPAITAETLPDLQTISQLTEDANELCQLFDQFIQFTDDKFAER
DACDEIAVFDPEQHQRASDLMPLGRQLIEHTCDLLAGLHHAQRTTAQLQQ
ANTFLEVLPNSAPVRAVEKQKLRTEAQQ*

spliced messenger RNA

>Gcaud2241.t1 ID=Gcaud2241.t1|Name=Gcaud2241.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:3535..4671+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCGCCGCCCTTCTACGCGCCCGTCGCTCTTCGGCACGACCTGCG
CACTCTCGGCCATCCGTCGCCGGATGAGCCCACGCTGCTCGTCTGTCACG
GCAAGCCGCGACTGGATCTTCTTCGATGGCTTGCGCGCAGGATTGATGCG
GACGCGTCCGTCGAAGACGCCGATCAACTCTCCCAATTCTGGGGAGCGCT
GGGAATTCAATCTGAACCGCCCAATCAGAAGGGCGTCCGCTTCCCTCTTA
ccgccgcgccgcagcgcgcaagggaccgcgccgccgccgccgcGTTTCTG
CGCGCGTGCATTGACTTGACGTTTGCGTTTGAGAGACGGAAAGATGATCT
CGAACAGAGCGCACTTTGTGAACCCACGGAGGAGACTGAGCACAACGATG
CTGCACCGTTTTCCGACGCCGACGTCGCGATGTTCGAGCAAACCGCCTCC
TTGATTCAAGATCGCCACCTTCTGTTCCCATCAACCACCCGCTTGTTGGA
CGCCGCCCCGAAAAGAAAGCCGCTTTCCAAACGGCCTGCGCTCGGCGCCA
ACAAGCCTGCAAGGCAGTTTGACGCCAACAAACCGTCACAATCGCACCTC
TCCGCCAAGACGCAGCAGAAGCAACCGCCGCTCATCTCCCGCGAAAAGAT
TCTCAACCAGTTGCGAACGCTGCAACGAGAAACCGTAGAGCTCAAGCAAG
CCCTCAAGTCGTCCGACCCACCCGTCGAGATCGAATCGGACACGGAAGAT
GAAGAGTCGGAACAAGTTGAAGCCCCCGCCATCACCGCTGAAACGCTTCC
AGATCTGCAAACCATCTCACAGCTCACAGAGGATGCAAACGAGCTTTGCC
AATTGTTCGACCAGTTCATTCAGTTCACTGACGACAAATTCGCCGAACGA
GACGCGTGTGATGAGATTGCTGTCTTCGATCCGGAGCAACATCAACGCGC
AAGTGATTTGATGCCGTTGGGCAGACAGCTCATTGAGCATACATGTGATT
TACTCGCAGGTCTGCACCACGCTCAACGAACCACCGCGCAGCTGCAACAG
GCCAACACGTTTTTGGAAGTTCTTCCCAATTCCGCGCCAGTACGGGCGGT
AGAGAAACAAAAACTGCGTACCGAAGCGCAACAATGA

protein sequence of Gcaud2241.t1

>Gcaud2241.t1 ID=Gcaud2241.t1|Name=Gcaud2241.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=379bp
MSAPPFYAPVALRHDLRTLGHPSPDEPTLLVCHGKPRLDLLRWLARRIDA
DASVEDADQLSQFWGALGIQSEPPNQKGVRFPLTAAPQRARDRAAAAAFL
RACIDLTFAFERRKDDLEQSALCEPTEETEHNDAAPFSDADVAMFEQTAS
LIQDRHLLFPSTTRLLDAAPKRKPLSKRPALGANKPARQFDANKPSQSHL
SAKTQQKQPPLISREKILNQLRTLQRETVELKQALKSSDPPVEIESDTED
EESEQVEAPAITAETLPDLQTISQLTEDANELCQLFDQFIQFTDDKFAER
DACDEIAVFDPEQHQRASDLMPLGRQLIEHTCDLLAGLHHAQRTTAQLQQ
ANTFLEVLPNSAPVRAVEKQKLRTEAQQ*

mRNA from alignment at NODE_2174_length_6571_cov_4.069753:3535..4671+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2241.t1 ID=Gcaud2241.t1|Name=Gcaud2241.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:3535..4671+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCGCCGCCCTTCTACGCGCCCGTCGCTCTTCGGCACGACCTGCG
CACTCTCGGCCATCCGTCGCCGGATGAGCCCACGCTGCTCGTCTGTCACG
GCAAGCCGCGACTGGATCTTCTTCGATGGCTTGCGCGCAGGATTGATGCG
GACGCGTCCGTCGAAGACGCCGATCAACTCTCCCAATTCTGGGGAGCGCT
GGGAATTCAATCTGAACCGCCCAATCAGAAGGGCGTCCGCTTCCCTCTTA
ccgccgcgccgcagcgcgcaagggaccgcgccgccgccgccgcGTTTCTG
CGCGCGTGCATTGACTTGACGTTTGCGTTTGAGAGACGGAAAGATGATCT
CGAACAGAGCGCACTTTGTGAACCCACGGAGGAGACTGAGCACAACGATG
CTGCACCGTTTTCCGACGCCGACGTCGCGATGTTCGAGCAAACCGCCTCC
TTGATTCAAGATCGCCACCTTCTGTTCCCATCAACCACCCGCTTGTTGGA
CGCCGCCCCGAAAAGAAAGCCGCTTTCCAAACGGCCTGCGCTCGGCGCCA
ACAAGCCTGCAAGGCAGTTTGACGCCAACAAACCGTCACAATCGCACCTC
TCCGCCAAGACGCAGCAGAAGCAACCGCCGCTCATCTCCCGCGAAAAGAT
TCTCAACCAGTTGCGAACGCTGCAACGAGAAACCGTAGAGCTCAAGCAAG
CCCTCAAGTCGTCCGACCCACCCGTCGAGATCGAATCGGACACGGAAGAT
GAAGAGTCGGAACAAGTTGAAGCCCCCGCCATCACCGCTGAAACGCTTCC
AGATCTGCAAACCATCTCACAGCTCACAGAGGATGCAAACGAGCTTTGCC
AATTGTTCGACCAGTTCATTCAGTTCACTGACGACAAATTCGCCGAACGA
GACGCGTGTGATGAGATTGCTGTCTTCGATCCGGAGCAACATCAACGCGC
AAGTGATTTGATGCCGTTGGGCAGACAGCTCATTGAGCATACATGTGATT
TACTCGCAGGTCTGCACCACGCTCAACGAACCACCGCGCAGCTGCAACAG
GCCAACACGTTTTTGGAAGTTCTTCCCAATTCCGCGCCAGTACGGGCGGT
AGAGAAACAAAAACTGCGTACCGAAGCGCAACAATGA

Coding sequence (CDS) from alignment at NODE_2174_length_6571_cov_4.069753:3535..4671+

>Gcaud2241.t1 ID=Gcaud2241.t1|Name=Gcaud2241.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1137bp|location=Sequence derived from alignment at NODE_2174_length_6571_cov_4.069753:3535..4671+ (Gracilaria caudata M_176_S67 male)
ATGTCCGCGCCGCCCTTCTACGCGCCCGTCGCTCTTCGGCACGACCTGCG
CACTCTCGGCCATCCGTCGCCGGATGAGCCCACGCTGCTCGTCTGTCACG
GCAAGCCGCGACTGGATCTTCTTCGATGGCTTGCGCGCAGGATTGATGCG
GACGCGTCCGTCGAAGACGCCGATCAACTCTCCCAATTCTGGGGAGCGCT
GGGAATTCAATCTGAACCGCCCAATCAGAAGGGCGTCCGCTTCCCTCTTA
ccgccgcgccgcagcgcgcaagggaccgcgccgccgccgccgcGTTTCTG
CGCGCGTGCATTGACTTGACGTTTGCGTTTGAGAGACGGAAAGATGATCT
CGAACAGAGCGCACTTTGTGAACCCACGGAGGAGACTGAGCACAACGATG
CTGCACCGTTTTCCGACGCCGACGTCGCGATGTTCGAGCAAACCGCCTCC
TTGATTCAAGATCGCCACCTTCTGTTCCCATCAACCACCCGCTTGTTGGA
CGCCGCCCCGAAAAGAAAGCCGCTTTCCAAACGGCCTGCGCTCGGCGCCA
ACAAGCCTGCAAGGCAGTTTGACGCCAACAAACCGTCACAATCGCACCTC
TCCGCCAAGACGCAGCAGAAGCAACCGCCGCTCATCTCCCGCGAAAAGAT
TCTCAACCAGTTGCGAACGCTGCAACGAGAAACCGTAGAGCTCAAGCAAG
CCCTCAAGTCGTCCGACCCACCCGTCGAGATCGAATCGGACACGGAAGAT
GAAGAGTCGGAACAAGTTGAAGCCCCCGCCATCACCGCTGAAACGCTTCC
AGATCTGCAAACCATCTCACAGCTCACAGAGGATGCAAACGAGCTTTGCC
AATTGTTCGACCAGTTCATTCAGTTCACTGACGACAAATTCGCCGAACGA
GACGCGTGTGATGAGATTGCTGTCTTCGATCCGGAGCAACATCAACGCGC
AAGTGATTTGATGCCGTTGGGCAGACAGCTCATTGAGCATACATGTGATT
TACTCGCAGGTCTGCACCACGCTCAACGAACCACCGCGCAGCTGCAACAG
GCCAACACGTTTTTGGAAGTTCTTCCCAATTCCGCGCCAGTACGGGCGGT
AGAGAAACAAAAACTGCGTACCGAAGCGCAACAATGA