Gcaud7808.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7808.t1
Unique NameGcaud7808.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length234
Homology
BLAST of Gcaud7808.t1 vs. uniprot
Match: A0A2V3INL6_9FLOR (Ribosome-recycling factor n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INL6_9FLOR)

HSP 1 Score: 299 bits (765), Expect = 6.280e-100
Identity = 163/232 (70.26%), Postives = 186/232 (80.17%), Query Frame = 0
Query:    2 AFCFTGFPVSPSFTHSPLHRTISRPHSFRLPHSTRSRVNTRQIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            AFC T  P      +  +   ISRP S RL  S RSR+ T  IR ELT+NETA KSEERM KT+DS+Q+NFNTVRTGRA+PSILDRV+VSYYG +TPLNQLAS+S+SGTSTL+VEPYDK+++ DVE+AI+QS+VGITPN+DGSKIRL VPQLTEERRK+LAKQVKAIAEE R+AIRNIRRDAVDALKK EKK+ LGKDESMTMQDEVQK               KEADIMKV
Sbjct:    5 AFCVTSVPCGLGLRYDIVRHGISRPQSLRLSRSHRSRIYTPTIRSELTQNETAKKSEERMNKTIDSVQTNFNTVRTGRASPSILDRVLVSYYGADTPLNQLASVSVSGTSTLVVEPYDKNAIQDVEKAIMQSDVGITPNSDGSKIRLAVPQLTEERRKELAKQVKAIAEEGRIAIRNIRRDAVDALKKQEKKNNLGKDESMTMQDEVQKXXXXXXXXXXXXXXQKEADIMKV 236          
BLAST of Gcaud7808.t1 vs. uniprot
Match: R7QEJ9_CHOCR (Ribosome-recycling factor RRF, Rhodoplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QEJ9_CHOCR)

HSP 1 Score: 271 bits (693), Expect = 7.700e-89
Identity = 147/226 (65.04%), Postives = 182/226 (80.53%), Query Frame = 0
Query:   13 SFTHSPLHRTISRPHSF-----RLPHSTRSRVNTRQIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            SFT         + H F     RL HS  S+ N   +RCELT+NET  ++ +RM KT+DS+QS F+TVRTGRA+ S++DRVMVSYY  ETPLNQLAS+S+SGTST++VEPYDKS + DVER I++S+VGITPNNDGS IRL+VP LTE+RRK+L KQVK +AEE RVA+RNIRRDAVD+LKK+EKK ELGKDES T+Q EVQK+TDK+VK +D++LK KEADI+KV
Sbjct:   22 SFTRGVCQIAAPQRHGFSTSTRRLQHSP-SQSNPSSVRCELTQNETGKETTDRMGKTLDSVQSAFSTVRTGRASTSMVDRVMVSYYDVETPLNQLASVSLSGTSTILVEPYDKSCMGDVERGIMESDVGITPNNDGSCIRLSVPPLTEDRRKELVKQVKGLAEEGRVALRNIRRDAVDSLKKLEKKKELGKDESKTLQSEVQKITDKHVKRIDELLKQKEADILKV 246          
BLAST of Gcaud7808.t1 vs. uniprot
Match: Q7XY97_GRIJA (Ribosome recycling factor n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY97_GRIJA)

HSP 1 Score: 263 bits (671), Expect = 9.890e-86
Identity = 129/188 (68.62%), Postives = 169/188 (89.89%), Query Frame = 0
Query:   46 CELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            CELT+N+TA KSE RM+KT+DS++S FN+VRTGRA+PS+LDR+ V+YYG +TPLN LA++S+SGTSTL+VEPYDKS + D+ER++++S++G+TPN+DGS IRL++PQLT+ERR QL KQVK++AE+ RVAIRNIRRDAVD++KK+EKKSELGKDES T+QD VQK+TDKYVK ++ + K KE DIMKV
Sbjct:   43 CELTENDTAEKSEARMQKTIDSVKSAFNSVRTGRASPSLLDRIQVNYYGADTPLNSLATVSVSGTSTLVVEPYDKSCISDIERSLMESDIGLTPNSDGSTIRLSIPQLTKERRSQLVKQVKSMAEDGRVAIRNIRRDAVDSIKKLEKKSELGKDESKTLQDRVQKLTDKYVKTIESVYKQKEEDIMKV 230          
BLAST of Gcaud7808.t1 vs. uniprot
Match: A0A7S1TJD3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TJD3_9RHOD)

HSP 1 Score: 223 bits (569), Expect = 1.820e-70
Identity = 111/196 (56.63%), Postives = 156/196 (79.59%), Query Frame = 0
Query:   38 RVNTRQIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            RV     R  ++  + A  SEERMKK+++++ ++FNT+RTGRANP+ILDRVMVSYYG ETPL QLAS+S   ++ + ++ +DKS + D+ERAI++S++G+TP+NDG+ IRL +P LT++RRK++ KQ+K +AEE RVA+RNIRRD VD +K +EK S++GKDES   QDE+QK+TDKYVK VD +LK KE ++MKV
Sbjct:   20 RVEPAAKRWRMSVKDIAKGSEERMKKSIEAVGTSFNTIRTGRANPAILDRVMVSYYGAETPLKQLASVSTPSSTVIAIDAFDKSCIKDIERAIMESDLGLTPSNDGNVIRLNIPALTQDRRKEMVKQLKQLAEEGRVALRNIRRDGVDQIKALEKSSDIGKDESKIAQDEIQKLTDKYVKTVDSLLKDKEGEVMKV 215          
BLAST of Gcaud7808.t1 vs. uniprot
Match: A0A7S0BL39_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BL39_9RHOD)

HSP 1 Score: 216 bits (550), Expect = 1.780e-67
Identity = 109/192 (56.77%), Postives = 152/192 (79.17%), Query Frame = 0
Query:   42 RQIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            + +R  + ++E   ++E+RMKKT+++++SNFNTVRTGRAN S+LDRV+V YY  +TPLNQLASISI  ++T+ ++PYDKS L D+ER+++++++G+ PN+DGS IRL VP LT+ERRK+  K VKAIAE  RVA+RNIRRDA++  KK EK  ++ KDES T QD  QK+TDKYVK++D +   KE DI+KV
Sbjct:   32 KMVRVFMAQDERLKRAEDRMKKTVETVKSNFNTVRTGRANASMLDRVVVPYYEVDTPLNQLASISIPSSTTIQIDPYDKSVLADIERSLMEADLGMNPNSDGSVIRLIVPPLTQERRKEFVKSVKAIAEHGRVAVRNIRRDAIEKYKKAEKDGDMSKDESKTNQDGAQKLTDKYVKMIDTLASEKEKDILKV 223          
BLAST of Gcaud7808.t1 vs. uniprot
Match: A0A5J4Z4W6_PORPP (Ribosome-recycling factor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4W6_PORPP)

HSP 1 Score: 213 bits (542), Expect = 4.820e-66
Identity = 108/190 (56.84%), Postives = 150/190 (78.95%), Query Frame = 0
Query:   44 IRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            ++  ++ ++  A +EERM K+MD++  +FNT+RTGRANP++LDRV+VSY+G ETPL QLAS+S   ++ L VE +D S + DVERAI++S++G+TP  DGS +RL VP LT+ERRK+  KQ+K +AE+ RVA+RNIRRD V+ +KKMEK SE+GKDES   QD +QK+TDKYVK+VD+ L  KE ++MKV
Sbjct:   50 VQPRMSVDDLVANAEERMSKSMDAVGQSFNTIRTGRANPAVLDRVVVSYWGVETPLKQLASVSTPSSTVLQVEVFDPSCVKDVERAIMESDLGMTPQTDGSTLRLNVPALTQERRKEFVKQLKQLAEDGRVAVRNIRRDIVEKIKKMEKDSEIGKDESKDGQDRIQKLTDKYVKMVDNALAEKEKEVMKV 239          
BLAST of Gcaud7808.t1 vs. uniprot
Match: A0A7S2S100_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S100_9STRA)

HSP 1 Score: 211 bits (536), Expect = 4.030e-65
Identity = 111/200 (55.50%), Postives = 154/200 (77.00%), Query Frame = 0
Query:   36 RSRVNTRQIRCELTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQ--DEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            R+ V +R +    T +E  +++E +MKK+++S+Q+N NT+RTGRANPS+LDRV V YYGT TPLNQ+ASIS+S  ++LIV+PYDKSSL DVE+AI++S++GI P+NDG KIRL +P LTEERRK+L K  K++ E+ +VA+RN+RRDAVD++KK+ K  + G  E       D +QK+TDKYVK VD+++  KE DI KV
Sbjct:   41 RAVVRSRLLVGMKTLDEVESEAEVKMKKSVESVQTNLNTLRTGRANPSLLDRVQVDYYGTPTPLNQVASISVSSGTSLIVDPYDKSSLGDVEKAIMESDIGIVPSNDGEKIRLNIPSLTEERRKELMKTAKSLGEDGKVALRNVRRDAVDSIKKLAKDKDAGVSEDSVKDSTDSIQKLTDKYVKEVDEVVAGKEKDISKV 240          
BLAST of Gcaud7808.t1 vs. uniprot
Match: A0A1E7F508_9STRA (Ribosome releasing factor n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F508_9STRA)

HSP 1 Score: 208 bits (529), Expect = 2.790e-64
Identity = 105/186 (56.45%), Postives = 148/186 (79.57%), Query Frame = 0
Query:   48 LTKNETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            +T  ET A + ++MKK++DSL  N N+VRTGRA+P+ILDRV   YYGTETP++Q+A+IS+     L+V+P+DK++L D+ERAI+ +++G+TP NDGS IRL +P LTE+RRK++ KQ KAI EE +VAIRNIRR AV+ +KK+EK S++G+DES   QD++QK+TDK VK VDD++  KE ++M V
Sbjct:   39 VTVEETNADATDKMKKSIDSLYLNMNSVRTGRASPAILDRVRAQYYGTETPISQMATISVPSAQQLMVDPFDKTALGDIERAIVDADIGLTPQNDGSVIRLNIPALTEDRRKEMMKQCKAIGEEGKVAIRNIRRKAVETIKKLEKSSDIGEDESKMAQDKIQKMTDKNVKEVDDIVDRKEKEVMTV 224          
BLAST of Gcaud7808.t1 vs. uniprot
Match: A0A0G4H7Q4_VITBC (RRF domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4H7Q4_VITBC)

HSP 1 Score: 207 bits (526), Expect = 2.850e-64
Identity = 108/183 (59.02%), Postives = 141/183 (77.05%), Query Frame = 0
Query:   51 NETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            NE     EERM+K++D+L++N  T+RTGRANP +LDR+ + YYGT TPL QLAS      STL ++PYDKS +P +E+AILQSE+G+TPN+DG  IRL VP +TE+RRK +AKQ K IAE++RVAIRNIRRD VD++KKMEK SEL +D+S   Q E QK+TDK+VK +D+  K K+ +IM V
Sbjct:   10 NEYLLDGEERMQKSLDALRNNLATLRTGRANPGMLDRISIEYYGTPTPLKQLASYGAPDASTLRIDPYDKSVIPVIEKAILQSELGLTPNSDGKCIRLNVPAMTEDRRKGIAKQAKQIAEDSRVAIRNIRRDVVDSIKKMEKDSELSEDQSKDFQGEAQKLTDKFVKEIDETYKIKDKEIMTV 192          
BLAST of Gcaud7808.t1 vs. uniprot
Match: A0A7S4EEJ6_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEJ6_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.160e-64
Identity = 103/175 (58.86%), Postives = 143/175 (81.71%), Query Frame = 0
Query:   59 ERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLNQLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTVPQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDESMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV 233
            +RM+K+++S+  N NT+RTGRA+P+ILDRV   YYGTETP+NQ+ASIS+     L VEP+DKS L DVERAI++S+VG+TP NDG+ IRL +P LTE+RRK++ KQ KAI EE +VA+RNIRR AVD++KK+EK S++ +DES + QD++QK+TD+ VK +D +++ KE D+MKV
Sbjct:   54 DRMEKSIESVMQNMNTIRTGRASPAILDRVKCDYYGTETPINQMASISVPSAQQLTVEPFDKSMLGDVERAIMESDVGLTPMNDGTVIRLNIPSLTEDRRKEMMKQCKAIGEEGKVAVRNIRRKAVDSIKKLEKDSDISEDESKSSQDDIQKMTDEKVKEIDGIVEKKENDVMKV 228          
The following BLAST results are available for this feature:
BLAST of Gcaud7808.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INL6_9FLOR6.280e-10070.26Ribosome-recycling factor n=1 Tax=Gracilariopsis c... [more]
R7QEJ9_CHOCR7.700e-8965.04Ribosome-recycling factor RRF, Rhodoplastic n=1 Ta... [more]
Q7XY97_GRIJA9.890e-8668.62Ribosome recycling factor n=1 Tax=Griffithsia japo... [more]
A0A7S1TJD3_9RHOD1.820e-7056.63Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S0BL39_9RHOD1.780e-6756.77Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A5J4Z4W6_PORPP4.820e-6656.84Ribosome-recycling factor n=1 Tax=Porphyridium pur... [more]
A0A7S2S100_9STRA4.030e-6555.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1E7F508_9STRA2.790e-6456.45Ribosome releasing factor n=1 Tax=Fragilariopsis c... [more]
A0A0G4H7Q4_VITBC2.850e-6459.02RRF domain-containing protein n=2 Tax=Vitrella bra... [more]
A0A7S4EEJ6_9STRA3.160e-6458.86Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR023584Ribosome recycling factor domainPFAMPF01765RRFcoord: 68..231
e-value: 1.4E-61
score: 207.1
IPR002661Ribosome recycling factorTIGRFAMTIGR00496TIGR00496coord: 58..233
e-value: 1.4E-69
score: 231.1
IPR002661Ribosome recycling factorPANTHERPTHR20982RIBOSOME RECYCLING FACTORcoord: 50..232
IPR002661Ribosome recycling factorHAMAPMF_00040RRFcoord: 51..233
score: 26.775232
IPR002661Ribosome recycling factorCDDcd00520RRFcoord: 55..231
e-value: 2.22626E-78
score: 231.765
NoneNo IPR availableGENE3D3.30.1360.40coord: 79..153
e-value: 4.5E-68
score: 230.1
NoneNo IPR availablePANTHERPTHR20982:SF3MITOCHONDRIAL RIBOSOME RECYCLING FACTORcoord: 50..232
IPR036191RRF superfamilyGENE3D1.10.132.20coord: 59..230
e-value: 4.5E-68
score: 230.1
IPR036191RRF superfamilySUPERFAMILY55194Ribosome recycling factor, RRFcoord: 53..232

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_213_length_36751_cov_4.280933contigNODE_213_length_36751_cov_4.280933:12497..13198 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7808.t1Gcaud7808.t1Gracilaria caudata M_176_S67 malemRNANODE_213_length_36751_cov_4.280933 12497..13198 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7808.t1 ID=Gcaud7808.t1|Name=Gcaud7808.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=234bp
MAFCFTGFPVSPSFTHSPLHRTISRPHSFRLPHSTRSRVNTRQIRCELTK
NETAAKSEERMKKTMDSLQSNFNTVRTGRANPSILDRVMVSYYGTETPLN
QLASISISGTSTLIVEPYDKSSLPDVERAILQSEVGITPNNDGSKIRLTV
PQLTEERRKQLAKQVKAIAEEARVAIRNIRRDAVDALKKMEKKSELGKDE
SMTMQDEVQKVTDKYVKLVDDMLKSKEADIMKV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR023584Ribosome_recyc_fac_dom
IPR002661Ribosome_recyc_fac
IPR036191RRF_sf