Gcaud7806.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7806.t1
Unique NameGcaud7806.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length475
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_213_length_36751_cov_4.280933contigNODE_213_length_36751_cov_4.280933:6235..7947 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002601223.1
Preferred namePOLI
PFAMsIMS,IMS_C,IMS_HHH
Max annot lvl33208|Metazoa
KEGG koko:K03510
KEGG Pathwayko03460,map03460
GOsGO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010225,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071214,GO:0071478,GO:0071482,GO:0071494,GO:0071704,GO:0071897,GO:0090304,GO:0104004,GO:0140097,GO:1901360,GO:1901362,GO:1901576,GO:1990904
Evalue4.66e-26
EggNOG OGsCOG0389@1|root,KOG2095@2759|Eukaryota,38CM1@33154|Opisthokonta,3BCX5@33208|Metazoa,3CV7D@33213|Bilateria,48CIW@7711|Chordata
EC2.7.7.7
DescriptionDNA-directed DNA polymerase activity
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7806Gcaud7806Gracilaria caudata M_176_S67 malegeneNODE_213_length_36751_cov_4.280933 6235..7947 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7806.t1Gcaud7806.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_213_length_36751_cov_4.280933 6235..7947 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7806.t1.stop1Gcaud7806.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_213_length_36751_cov_4.280933 6235..6237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7806.t1.CDS1Gcaud7806.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_213_length_36751_cov_4.280933 6235..7381 -
Gcaud7806.t1.CDS2Gcaud7806.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_213_length_36751_cov_4.280933 7465..7502 -
Gcaud7806.t1.CDS3Gcaud7806.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_213_length_36751_cov_4.280933 7708..7947 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7806.t1.exon1Gcaud7806.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_213_length_36751_cov_4.280933 6235..7381 -
Gcaud7806.t1.exon2Gcaud7806.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_213_length_36751_cov_4.280933 7465..7502 -
Gcaud7806.t1.exon3Gcaud7806.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_213_length_36751_cov_4.280933 7708..7947 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7806.t1.intron1Gcaud7806.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_213_length_36751_cov_4.280933 7382..7464 -
Gcaud7806.t1.intron2Gcaud7806.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_213_length_36751_cov_4.280933 7503..7707 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7806.t1.start1Gcaud7806.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_213_length_36751_cov_4.280933 7945..7947 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7806.t1 ID=Gcaud7806.t1|Name=Gcaud7806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=475bp
MVSTKKRPRPGTTRAIIALDLDCFYASVAIRARPHLKDKPVVIVQKHLCV
TSNYIARSRAKGAVQKMTPVSQALQKCPELAELRFYLKATYLGTELTMCA
GVSDSKQLAKLAVNMHKPNDQTTFLPGQSAEYINTLPPRALTGFGHHTLE
KIITWTKEHAQDMSVETVADVLLLFGKDGSGLRQLADIMGNEKQARHLLD
LCRGVDTTEVVDCGNAPKSISAEDSCRSCDNMKDVNRRLTVQISRLVSRL
RDDGMMFSRRPKTLTVSYRFRGDGFVGTMRSVPMPMEIVSVCRSRQSKAI
QKAIDGIRKAALMVLEEHAGVCAKNKFDLTLLAVGASNFTSAKANNGDGF
IEDISRFFSRPKGNDADKHRKANVPLYGSSGKSGVSAQPACRGKIPEVPE
VPENNTQRVSESSRAMEARCPICNRRLPGDNSAQNKHIDTCLKTASATQE
IGGSKRRRKTPKIRTVDTYFAKRS*
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spliced messenger RNA

>Gcaud7806.t1 ID=Gcaud7806.t1|Name=Gcaud7806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1425bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:6235..7947- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCAACGAAGAAACGGCCGCGCCCTGGGACTACCAGGGCAATCAT
TGCTCTCGACTTGGACTGTTTCTATGCATCTGTAGCGATACGAGCTCGCC
CACACCTGAAAGACAAACCGGTCGTTATTGTTCAGAAACACTTATGCGTA
ACCAGTAACTATATTGCAAGAAGTCGAGCAAAAGGCGCAGTTCAAAAGAT
GACTCCAGTCTCTCAGGCTTTACAAAAGTGTCCTGAATTGGCGGAGCTCC
GTTTCTATTTAAAGGCAACGTATTTGGGAACGGAACTGACGATGTGTGCC
GGTGTCAGCGATTCGAAGCAATTGGCGAAACTTGCGGTGAACATGCATAA
GCCCAATGACCAAACAACATTCTTGCCAGGACAATCTGCAGAATACATCA
ACACTTTGCCGCCCCGAGCGCTCACAGGGTTCGGTCATCATACTCTTGAA
AAGATAATCACATGGACAAAGGAGCATGCTCAAGATATGTCCGTTGAGAC
CGTTGCAGATGTCCTGCTGTTGTTTGGAAAGGATGGCAGCGGTTTGCGAC
AGCTTGCTGATATCATGGGGAATGAAAAACAAGCTCGGCACCTTCTTGAT
CTCTGTCGTGGGGTCGATACCACAGAAGTGGTGGATTGCGGAAATGCACC
AAAGTCTATTTCAGCTGAGGATTCGTGTCGGAGCTGTGATAATATGAAAG
ATGTCAACCGACGTCTCACCGTTCAAATAAGTCGGTTGGTTTCGCGCCTA
CGGGATGATGGCATGATGTTCTCAAGGCGACCTAAGACGCTGACTGTGTC
GTATAGGTTTCGTGGAGATGGGTTTGTCGGTACGATGCGCTCTGTACCGA
TGCCTATGGAGATCGTGTCTGTGTGCCGCTCACGACAAAGTAAGGCAATT
CAGAAGGCAATAGATGGAATACGGAAAGCGGCTTTAATGGTCCTTGAAGA
GCACGCTGGAGTGTGTGCTAAAAACAAGTTTGATCTAACTCTACTAGCGG
TCGGGGCAAGTAACTTTACAAGTGCCAAAGCTAACAATGGAGACGGATTC
ATTGAGGATATATCGAGGTTTTTCTCCAGACCTAAAGGAAACGATGCAGA
CAAGCATCGCAAAGCAAACGTGCCTCTCTATGGTTCTTCGGGAAAGTCTG
GCGTCTCGGCTCAGCCAGCGTGTCGAGGCAAAATACCGGAAGTACCGGAA
GTACCAGAAAATAACACCCAACGCGTCAGTGAATCGAGCAGGGCCATGGA
AGCCAGATGCCCGATATGCAATAGGAGACTGCCCGGAGATAACTCAGCGC
AAAACAAACACATCGACACCTGCCTTAAAACGGCTTCTGCCACCCAAGAA
ATCGGCGGTTCGAAGCGACGGCGAAAGACTCCGAAGATAAGAACGGTAGA
CACTTACTTCGCAAAGCGCTCGTGA
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protein sequence of Gcaud7806.t1

>Gcaud7806.t1 ID=Gcaud7806.t1|Name=Gcaud7806.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=475bp
MVSTKKRPRPGTTRAIIALDLDCFYASVAIRARPHLKDKPVVIVQKHLCV
TSNYIARSRAKGAVQKMTPVSQALQKCPELAELRFYLKATYLGTELTMCA
GVSDSKQLAKLAVNMHKPNDQTTFLPGQSAEYINTLPPRALTGFGHHTLE
KIITWTKEHAQDMSVETVADVLLLFGKDGSGLRQLADIMGNEKQARHLLD
LCRGVDTTEVVDCGNAPKSISAEDSCRSCDNMKDVNRRLTVQISRLVSRL
RDDGMMFSRRPKTLTVSYRFRGDGFVGTMRSVPMPMEIVSVCRSRQSKAI
QKAIDGIRKAALMVLEEHAGVCAKNKFDLTLLAVGASNFTSAKANNGDGF
IEDISRFFSRPKGNDADKHRKANVPLYGSSGKSGVSAQPACRGKIPEVPE
VPENNTQRVSESSRAMEARCPICNRRLPGDNSAQNKHIDTCLKTASATQE
IGGSKRRRKTPKIRTVDTYFAKRS*
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mRNA from alignment at NODE_213_length_36751_cov_4.280933:6235..7947-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7806.t1 ID=Gcaud7806.t1|Name=Gcaud7806.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:6235..7947- (Gracilaria caudata M_176_S67 male)
ATGGTTTCAACGAAGAAACGGCCGCGCCCTGGGACTACCAGGGCAATCAT
TGCTCTCGACTTGGACTGTTTCTATGCATCTGTAGCGATACGAGCTCGCC
CACACCTGAAAGACAAACCGGTCGTTATTGTTCAGAAACACTTATGCGTA
ACCAGTAACTATATTGCAAGAAGTCGAGCAAAAGGCGCAGTTCAAAAGAT
GACTCCAGTCTCTCAGGCTTTACAAAAGTGTCCTGAATTGGTATGTATAG
ATGGATCTGACTTGACACCTTTTCGAGAAGCTAGTCTTGAGGTCCTCAAC
GTGATTCGGGCTTGGCTTCTCGAAAGGGCAAGAGAAGTATCGGTCGAGTT
GAGTAGCGAACCTCCCGTGTGTCCATGTCAACGATTAGGATTTGATGAAG
TGTTTATAGACGTGACAAATCTAACTTCTGCTCATATTGAAAAAGGCGGA
GCTCCGTTTCTATTTAAAGGCAACGTATTTGGGGTAACACAGGATGACGA
CGCTCGGCGAACGCTAATGGTCGCGTCACAGATTGCCCATGATCTCCGAA
CTCATGTGACCCAAAGAACGGAACTGACGATGTGTGCCGGTGTCAGCGAT
TCGAAGCAATTGGCGAAACTTGCGGTGAACATGCATAAGCCCAATGACCA
AACAACATTCTTGCCAGGACAATCTGCAGAATACATCAACACTTTGCCGC
CCCGAGCGCTCACAGGGTTCGGTCATCATACTCTTGAAAAGATAATCACA
TGGACAAAGGAGCATGCTCAAGATATGTCCGTTGAGACCGTTGCAGATGT
CCTGCTGTTGTTTGGAAAGGATGGCAGCGGTTTGCGACAGCTTGCTGATA
TCATGGGGAATGAAAAACAAGCTCGGCACCTTCTTGATCTCTGTCGTGGG
GTCGATACCACAGAAGTGGTGGATTGCGGAAATGCACCAAAGTCTATTTC
AGCTGAGGATTCGTGTCGGAGCTGTGATAATATGAAAGATGTCAACCGAC
GTCTCACCGTTCAAATAAGTCGGTTGGTTTCGCGCCTACGGGATGATGGC
ATGATGTTCTCAAGGCGACCTAAGACGCTGACTGTGTCGTATAGGTTTCG
TGGAGATGGGTTTGTCGGTACGATGCGCTCTGTACCGATGCCTATGGAGA
TCGTGTCTGTGTGCCGCTCACGACAAAGTAAGGCAATTCAGAAGGCAATA
GATGGAATACGGAAAGCGGCTTTAATGGTCCTTGAAGAGCACGCTGGAGT
GTGTGCTAAAAACAAGTTTGATCTAACTCTACTAGCGGTCGGGGCAAGTA
ACTTTACAAGTGCCAAAGCTAACAATGGAGACGGATTCATTGAGGATATA
TCGAGGTTTTTCTCCAGACCTAAAGGAAACGATGCAGACAAGCATCGCAA
AGCAAACGTGCCTCTCTATGGTTCTTCGGGAAAGTCTGGCGTCTCGGCTC
AGCCAGCGTGTCGAGGCAAAATACCGGAAGTACCGGAAGTACCAGAAAAT
AACACCCAACGCGTCAGTGAATCGAGCAGGGCCATGGAAGCCAGATGCCC
GATATGCAATAGGAGACTGCCCGGAGATAACTCAGCGCAAAACAAACACA
TCGACACCTGCCTTAAAACGGCTTCTGCCACCCAAGAAATCGGCGGTTCG
AAGCGACGGCGAAAGACTCCGAAGATAAGAACGGTAGACACTTACTTCGC
AAAGCGCTCGTGA
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Coding sequence (CDS) from alignment at NODE_213_length_36751_cov_4.280933:6235..7947-

>Gcaud7806.t1 ID=Gcaud7806.t1|Name=Gcaud7806.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1425bp|location=Sequence derived from alignment at NODE_213_length_36751_cov_4.280933:6235..7947- (Gracilaria caudata M_176_S67 male)
ATGGTTTCAACGAAGAAACGGCCGCGCCCTGGGACTACCAGGGCAATCAT
TGCTCTCGACTTGGACTGTTTCTATGCATCTGTAGCGATACGAGCTCGCC
CACACCTGAAAGACAAACCGGTCGTTATTGTTCAGAAACACTTATGCGTA
ACCAGTAACTATATTGCAAGAAGTCGAGCAAAAGGCGCAGTTCAAAAGAT
GACTCCAGTCTCTCAGGCTTTACAAAAGTGTCCTGAATTGGCGGAGCTCC
GTTTCTATTTAAAGGCAACGTATTTGGGAACGGAACTGACGATGTGTGCC
GGTGTCAGCGATTCGAAGCAATTGGCGAAACTTGCGGTGAACATGCATAA
GCCCAATGACCAAACAACATTCTTGCCAGGACAATCTGCAGAATACATCA
ACACTTTGCCGCCCCGAGCGCTCACAGGGTTCGGTCATCATACTCTTGAA
AAGATAATCACATGGACAAAGGAGCATGCTCAAGATATGTCCGTTGAGAC
CGTTGCAGATGTCCTGCTGTTGTTTGGAAAGGATGGCAGCGGTTTGCGAC
AGCTTGCTGATATCATGGGGAATGAAAAACAAGCTCGGCACCTTCTTGAT
CTCTGTCGTGGGGTCGATACCACAGAAGTGGTGGATTGCGGAAATGCACC
AAAGTCTATTTCAGCTGAGGATTCGTGTCGGAGCTGTGATAATATGAAAG
ATGTCAACCGACGTCTCACCGTTCAAATAAGTCGGTTGGTTTCGCGCCTA
CGGGATGATGGCATGATGTTCTCAAGGCGACCTAAGACGCTGACTGTGTC
GTATAGGTTTCGTGGAGATGGGTTTGTCGGTACGATGCGCTCTGTACCGA
TGCCTATGGAGATCGTGTCTGTGTGCCGCTCACGACAAAGTAAGGCAATT
CAGAAGGCAATAGATGGAATACGGAAAGCGGCTTTAATGGTCCTTGAAGA
GCACGCTGGAGTGTGTGCTAAAAACAAGTTTGATCTAACTCTACTAGCGG
TCGGGGCAAGTAACTTTACAAGTGCCAAAGCTAACAATGGAGACGGATTC
ATTGAGGATATATCGAGGTTTTTCTCCAGACCTAAAGGAAACGATGCAGA
CAAGCATCGCAAAGCAAACGTGCCTCTCTATGGTTCTTCGGGAAAGTCTG
GCGTCTCGGCTCAGCCAGCGTGTCGAGGCAAAATACCGGAAGTACCGGAA
GTACCAGAAAATAACACCCAACGCGTCAGTGAATCGAGCAGGGCCATGGA
AGCCAGATGCCCGATATGCAATAGGAGACTGCCCGGAGATAACTCAGCGC
AAAACAAACACATCGACACCTGCCTTAAAACGGCTTCTGCCACCCAAGAA
ATCGGCGGTTCGAAGCGACGGCGAAAGACTCCGAAGATAAGAACGGTAGA
CACTTACTTCGCAAAGCGCTCGTGA
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