Gcaud934.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud934.t1
Unique Name	Gcaud934.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	317

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_212_length_36801_cov_4.990929	contig	NODE_212_length_36801_cov_4.990929:10810..11760 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7668.SPU_005982-tr
PFAMs	RVT_1,rve
Max annot lvl	33208\|Metazoa
Evalue	2.87e-56
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,3AH2J@33154\|Opisthokonta,3BX3Q@33208\|Metazoa
Description	transposition, RNA-mediated
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud934	Gcaud934	Gracilaria caudata M_176_S67 male	gene	NODE_212_length_36801_cov_4.990929 10810..11760 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud934.t1.start1	Gcaud934.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_212_length_36801_cov_4.990929 10810..10812 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud934.t1.CDS1	Gcaud934.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_212_length_36801_cov_4.990929 10810..11760 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud934.t1.exon1	Gcaud934.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_212_length_36801_cov_4.990929 10810..11760 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud934.t1.stop1	Gcaud934.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_212_length_36801_cov_4.990929 11758..11760 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud934.t1	Gcaud934.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_212_length_36801_cov_4.990929 10810..11760 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_212_length_36801_cov_4.990929:10810..11760+
coding sequence from alignment at NODE_212_length_36801_cov_4.990929:10810..11760+

mRNA sequence

>Gcaud934.t1 ID=Gcaud934.t1|Name=Gcaud934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=317bp
MFSEFAXXXXGSGRKHTESPSASVAVEPKSSDESVAPTSSGENTPISSGE
AVPNSSGEKPVSTGTEKKDPVDELQSLDFTHVPGTHCVKLREMLREFTSM
WDGFLGKIGITEHGIDLLPSTPPISQNPYRSGPTAREEEKTQVKKMLRAG
VIEPAQSPWASPVVLALKADGSWRFCIDYSNAVTVKDVYPIPRMDKCFDS
LGSARLFSTLDANWGYWHVPVREEDRDKRAFVCHQGLYRFNQMPFGLTNA
PATFQHAVDILLARFKWKTCLVYLDDIIVFSRSLDEHLNHVREDMRVLRD
AGITLKLKKREFLPKM*

spliced messenger RNA

>Gcaud934.t1 ID=Gcaud934.t1|Name=Gcaud934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=951bp|location=Sequence derived from alignment at NODE_212_length_36801_cov_4.990929:10810..11760+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
atgttctcggaattcgcgnnnnnnnnnngggggtcggggcggaagcatac
tgaatcgccttcagcttcagtcgctgttgaaccgaaatcttcggatgagt
cggttgcaccgacctcgtcgggagagaataccccaatctcgtcgggagaa
gcagtaccgaactcgtcgggagaaaaaccagtgtcaactggaacggagaa
gaaggatcctgttgacgagctccagtccctggactttacccatgttcctg
ggacgcactgtgtaaagctacgggaaatgttgcgtgaattcacgtccatg
tgggacggtttccttggtaagattgggatcaccgaacatgggattgattt
gcttccgagtactcctccgatttcacagaacccttacaggtcgggaccga
cagctcgggaggaagagaagacccaagtgaagaaaatgctccgggctggt
gtaattgaaccggctcaatctccatgggcctcacccgtggtacttgctct
caaagctgatgggtcttggcgtttttgcattgactacagcaacgcggtca
ccgtcaaagacgtatatcccatcccgagaatggacaaatgttttgactcg
ctgggaagcgcgagattgttctcgacccttgatgcgaactggggatattg
gcatgtcccagtcagggaagaagaccgtgataagagggcttttgtgtgcc
atcaaggcctctaccgatttaatcagatgccgttcggtcttacgaacgct
cctgctactttccagcatgcggtagatattttgcttgcccgcttcaaatg
gaagacttgcctggtctacctggacgatatcattgtattttctaggtctc
tggacgaacacttgaaccatgtcagggaagatatgcgagtcctacgagat
gcaggtattacattgaagttgaaaaagcgtgagttcttaccgaaaatgtg
a

protein sequence of Gcaud934.t1

>Gcaud934.t1 ID=Gcaud934.t1|Name=Gcaud934.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=317bp
MFSEFAXXXXGSGRKHTESPSASVAVEPKSSDESVAPTSSGENTPISSGE
AVPNSSGEKPVSTGTEKKDPVDELQSLDFTHVPGTHCVKLREMLREFTSM
WDGFLGKIGITEHGIDLLPSTPPISQNPYRSGPTAREEEKTQVKKMLRAG
VIEPAQSPWASPVVLALKADGSWRFCIDYSNAVTVKDVYPIPRMDKCFDS
LGSARLFSTLDANWGYWHVPVREEDRDKRAFVCHQGLYRFNQMPFGLTNA
PATFQHAVDILLARFKWKTCLVYLDDIIVFSRSLDEHLNHVREDMRVLRD
AGITLKLKKREFLPKM*

mRNA from alignment at NODE_212_length_36801_cov_4.990929:10810..11760+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud934.t1 ID=Gcaud934.t1|Name=Gcaud934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=951bp|location=Sequence derived from alignment at NODE_212_length_36801_cov_4.990929:10810..11760+ (Gracilaria caudata M_176_S67 male)
atgttctcggaattcgcgnnnnnnnnnngggggtcggggcggaagcatac
tgaatcgccttcagcttcagtcgctgttgaaccgaaatcttcggatgagt
cggttgcaccgacctcgtcgggagagaataccccaatctcgtcgggagaa
gcagtaccgaactcgtcgggagaaaaaccagtgtcaactggaacggagaa
gaaggatcctgttgacgagctccagtccctggactttacccatgttcctg
ggacgcactgtgtaaagctacgggaaatgttgcgtgaattcacgtccatg
tgggacggtttccttggtaagattgggatcaccgaacatgggattgattt
gcttccgagtactcctccgatttcacagaacccttacaggtcgggaccga
cagctcgggaggaagagaagacccaagtgaagaaaatgctccgggctggt
gtaattgaaccggctcaatctccatgggcctcacccgtggtacttgctct
caaagctgatgggtcttggcgtttttgcattgactacagcaacgcggtca
ccgtcaaagacgtatatcccatcccgagaatggacaaatgttttgactcg
ctgggaagcgcgagattgttctcgacccttgatgcgaactggggatattg
gcatgtcccagtcagggaagaagaccgtgataagagggcttttgtgtgcc
atcaaggcctctaccgatttaatcagatgccgttcggtcttacgaacgct
cctgctactttccagcatgcggtagatattttgcttgcccgcttcaaatg
gaagacttgcctggtctacctggacgatatcattgtattttctaggtctc
tggacgaacacttgaaccatgtcagggaagatatgcgagtcctacgagat
gcaggtattacattgaagttgaaaaagcgtgagttcttaccgaaaatgtg
a

Coding sequence (CDS) from alignment at NODE_212_length_36801_cov_4.990929:10810..11760+

>Gcaud934.t1 ID=Gcaud934.t1|Name=Gcaud934.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=951bp|location=Sequence derived from alignment at NODE_212_length_36801_cov_4.990929:10810..11760+ (Gracilaria caudata M_176_S67 male)
atgttctcggaattcgcgnnnnnnnnnngggggtcggggcggaagcatac
tgaatcgccttcagcttcagtcgctgttgaaccgaaatcttcggatgagt
cggttgcaccgacctcgtcgggagagaataccccaatctcgtcgggagaa
gcagtaccgaactcgtcgggagaaaaaccagtgtcaactggaacggagaa
gaaggatcctgttgacgagctccagtccctggactttacccatgttcctg
ggacgcactgtgtaaagctacgggaaatgttgcgtgaattcacgtccatg
tgggacggtttccttggtaagattgggatcaccgaacatgggattgattt
gcttccgagtactcctccgatttcacagaacccttacaggtcgggaccga
cagctcgggaggaagagaagacccaagtgaagaaaatgctccgggctggt
gtaattgaaccggctcaatctccatgggcctcacccgtggtacttgctct
caaagctgatgggtcttggcgtttttgcattgactacagcaacgcggtca
ccgtcaaagacgtatatcccatcccgagaatggacaaatgttttgactcg
ctgggaagcgcgagattgttctcgacccttgatgcgaactggggatattg
gcatgtcccagtcagggaagaagaccgtgataagagggcttttgtgtgcc
atcaaggcctctaccgatttaatcagatgccgttcggtcttacgaacgct
cctgctactttccagcatgcggtagatattttgcttgcccgcttcaaatg
gaagacttgcctggtctacctggacgatatcattgtattttctaggtctc
tggacgaacacttgaaccatgtcagggaagatatgcgagtcctacgagat
gcaggtattacattgaagttgaaaaagcgtgagttcttaccgaaaatgtg
a