Gcaud1750.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1750.t1
Unique Name	Gcaud1750.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	262

Homology

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BLAST of Gcaud1750.t1 vs. uniprot
Match: A0A2V3IPJ0_9FLOR (Putative serine/threonine-protein kinase roco5 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPJ0_9FLOR)

HSP 1 Score: 323 bits (828), Expect = 2.370e-98
Identity = 156/261 (59.77%), Postives = 200/261 (76.63%), Query Frame = 0

Query:    1 MWMNEDNVQAFVACSPHADSGRGPPITQLIESMRAFAMRGRLFVVESSLSALAMIILYPRQRVQFIHRHGFKVFFETLQFHPCQSSTVSLVFWMITTMFSEPVKSAKESEAFWNAFVIDQGSQELVRSISNVRRGVSSEKDRVELLEHGFYAMLAVVRFNSSMRKSLIDSGCIQHVQTALTDISNNTVTGVQNVDKVMMTHKARLGTVLCDVIKELGADGSGYAYMREQNVKRSLEDLMSMYSGDGTFAHSCRDAIAMLSY 261
            MWMNE NVQAFV CS   D   GPPIT LI+S+R F+  G+  VV+S+LSALA+II YPRQR +F+HRHGFK FFETLQ  P ++S  +L+F M+  MFS PV +  +S+AFW AFVIDQGSQ L++S+ +VRRGV SEK+R+E+LE GFYA+L V RF+SS+R+SLID+GC+Q V   L DIS++ +TGVQ  D  ++  + RLG  LCDV++ELG D +GY Y+RE NV+RSLED+M  Y GD  FAHSCR A+A+LSY
Sbjct: 1141 MWMNEANVQAFVTCSG-GDGQTGPPITHLIQSLRTFSYAGKTHVVQSTLSALALIIYYPRQRAEFMHRHGFKAFFETLQQQPQETSATALIFSMLAAMFSGPVSNPNDSDAFWKAFVIDQGSQGLIQSLDHVRRGVPSEKERLEVLERGFYAVLTVARFHSSLRRSLIDAGCMQQVHAVLRDISSSAMTGVQTADNSLIACRTRLGARLCDVVRELGTDNNGYRYLRENNVRRSLEDMMRRYPGDSAFAHSCRGALALLSY 1400

The following BLAST results are available for this feature:

BLAST of Gcaud1750.t1 vs. uniprot

BLAST of Gcaud1750.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IPJ0_9FLOR	2.370e-98	59.77	Putative serine/threonine-protein kinase roco5 n=1...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..41
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 60..261
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 42..59
None	No IPR available	TMHMM	TMhelix		coord: 42..59

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2120_length_6764_cov_4.274090	contig	NODE_2120_length_6764_cov_4.274090:5963..6748 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1750.t1	Gcaud1750.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_2120_length_6764_cov_4.274090 5963..6748 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1750.t1 ID=Gcaud1750.t1|Name=Gcaud1750.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=262bp
MWMNEDNVQAFVACSPHADSGRGPPITQLIESMRAFAMRGRLFVVESSLS
ALAMIILYPRQRVQFIHRHGFKVFFETLQFHPCQSSTVSLVFWMITTMFS
EPVKSAKESEAFWNAFVIDQGSQELVRSISNVRRGVSSEKDRVELLEHGF
YAMLAVVRFNSSMRKSLIDSGCIQHVQTALTDISNNTVTGVQNVDKVMMT
HKARLGTVLCDVIKELGADGSGYAYMREQNVKRSLEDLMSMYSGDGTFAH
SCRDAIAMLSY*