Gcaud8093.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8093.t1
Unique Name	Gcaud8093.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	654

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_211_length_36859_cov_4.689676	contig	NODE_211_length_36859_cov_4.689676:16756..19016 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK068CT
PFAMs	XRN_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12618,ko:K12619
KEGG Pathway	ko03008,ko03018,map03008,map03018
Evalue	3.43e-88
EggNOG OGs	COG5049@1\|root,KOG2044@2759\|Eukaryota
Description	5'-3' exoribonuclease activity
COG category	ADL
BRITE	ko00000,ko00001,ko01000,ko03009,ko03016,ko03019,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8093	Gcaud8093	Gracilaria caudata M_176_S67 male	gene	NODE_211_length_36859_cov_4.689676 16756..19016 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8093.t1	Gcaud8093.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_211_length_36859_cov_4.689676 16756..19016 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8093.t1.stop1	Gcaud8093.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_211_length_36859_cov_4.689676 16756..16758 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8093.t1.CDS1	Gcaud8093.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_211_length_36859_cov_4.689676 16756..18038 -
Gcaud8093.t1.CDS2	Gcaud8093.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_211_length_36859_cov_4.689676 18130..18261 -
Gcaud8093.t1.CDS3	Gcaud8093.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_211_length_36859_cov_4.689676 18379..18828 -
Gcaud8093.t1.CDS4	Gcaud8093.t1.CDS4	Gracilaria caudata M_176_S67 male	CDS	NODE_211_length_36859_cov_4.689676 18920..19016 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8093.t1.exon1	Gcaud8093.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_211_length_36859_cov_4.689676 16756..18038 -
Gcaud8093.t1.exon2	Gcaud8093.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_211_length_36859_cov_4.689676 18130..18261 -
Gcaud8093.t1.exon3	Gcaud8093.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_211_length_36859_cov_4.689676 18379..18828 -
Gcaud8093.t1.exon4	Gcaud8093.t1.exon4	Gracilaria caudata M_176_S67 male	exon	NODE_211_length_36859_cov_4.689676 18920..19016 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8093.t1.intron1	Gcaud8093.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_211_length_36859_cov_4.689676 18039..18129 -
Gcaud8093.t1.intron2	Gcaud8093.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_211_length_36859_cov_4.689676 18262..18378 -
Gcaud8093.t1.intron3	Gcaud8093.t1.intron3	Gracilaria caudata M_176_S67 male	intron	NODE_211_length_36859_cov_4.689676 18829..18919 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8093.t1.start1	Gcaud8093.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_211_length_36859_cov_4.689676 19014..19016 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_211_length_36859_cov_4.689676:16756..19016-
coding sequence from alignment at NODE_211_length_36859_cov_4.689676:16756..19016-

mRNA sequence

>Gcaud8093.t1 ID=Gcaud8093.t1|Name=Gcaud8093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=654bp
MGIIGFQKWFLGTFPEVVRVQHGPKFGEVYDHVAFDINQILHQVLRRATN
RQTLAAAIFRELDQILKNCVPRKSVFFAFDGPAPLAKLVTQRRRRRKKTT
EYVSDYVDENGVLRKPKFARPAIDALEMTPGVETLYFVRDSVEYWAYSRL
QNDRKYRNVDIRISGADVPGEGELKLVDYCRTGTRGKRQNYVISVWELAR
TFERIFPNESSSVRLDFVLLAILNGNDYIPKVRGISLTRTWRRYVSLKLV
SKGGDLPPFHGHSLVDAEKRTLNWPMFYALMDSVGVPVPSIAEAEQEKRM
GAEMSPVVRKKQGYMSMSDSEVEEHIVYTGNEDGIPMDRLDDGPNSEEIE
SASEGSTTDSEDSGSDFAEKEDEDYFDEEQEHIQTLIALSGDTTKFYDTC
RWVRALLWNLQMYVDGNCGDYYFQYGKPYGPPIEEILKYIRIHDGDPFLI
QAPISRSRPLLPHEAAMAVLPKHAKHLLPVPLQRMYDNPAMLKKIFTGKD
EVNVASMVTEISRIPESEFSTEELLRTVFGSPILLRLPRLNDSVQYMNPR
VKKPGQRFEEVRHRPVIYRVPFTMTTLPPCYEWPKGSIPSMLDLSYKTVR
GSLLRAKNNVPAENNGSASKLSERPQRRTHRGVRHIRPRTSPSRRDYPTK
PHS*

spliced messenger RNA

>Gcaud8093.t1 ID=Gcaud8093.t1|Name=Gcaud8093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1962bp|location=Sequence derived from alignment at NODE_211_length_36859_cov_4.689676:16756..19016- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATCATTGGCTTTCAGAAATGGTTTCTTGGCACCTTTCCTGAGGT
TGTCAGAGTCCAGCACGGCCCCAAATTTGGGGAAGTATACGATCATGTCG
CATTCGACATCAATCAGATTCTACATCAGGTGCTACGGCGCGCTACCAAC
AGACAGACTCTGGCTGCCGCTATCTTCCGTGAACTTGACCAGATCTTGAA
AAACTGCGTTCCAAGGAAGTCAGTTTTCTTTGCTTTTGACGGTCCAGCTC
CGCTGGCGAAGCTGGTGACACAGCGACGACGCCGAAGAAAGAAGACCACA
GAGTATGTATCCGACTACGTTGACGAGAATGGAGTGCTCCGTAAACCGAA
ATTCGCCAGACCAGCTATCGATGCCCTAGAGATGACTCCCGGCGTCGAAA
CTTTATACTTCGTGCGCGACTCAGTAGAGTACTGGGCTTATTCGCGTTTG
CAAAATGATCGGAAGTATCGCAACGTCGACATTCGCATTTCCGGTGCTGA
TGTGCCCGGTGAGGGTGAATTGAAGCTCGTCGACTATTGCCGCACAGGAA
CGCGGGGTAAAAGGCAGAACTACGTCATCAGTGTTTGGGAACTGGCGCGA
ACATTTGAACGTATCTTTCCGAACGAATCGTCAAGCGTACGTCTCGACTT
TGTGCTTCTAGCGATTTTGAATGGTAACGATTACATTCCCAAAGTTCGAG
GCATTTCTCTTACACGGACATGGCGTCGCTACGTGAGCTTGAAGTTGGTT
TCGAAGGGCGGGGATTTACCGCCTTTTCACGGCCATTCTCTTGTTGATGC
GGAAAAGCGAACCCTGAACTGGCCCATGTTTTACGCGTTGATGGATAGCG
TTGGTGTGCCTGTGCCATCCATTGCCGAAGCGGAGCAAGAGAAGCGTATG
GGGGCAGAAATGTCTCCTGTTGTCCGAAAGAAGCAAGGTTACATGAGTAT
GTCGGATTCTGAAGTGGAAGAGCACATTGTATATACTGGTAATGAAGATG
GAATTCCCATGGATCGTCTCGACGATGGTCCAAACTCCGAGGAGATCGAG
TCTGCTTCTGAAGGGAGTACTACAGACTCAGAAGATAGCGGATCTGACTT
TGCGGAGAAAGAAGATGAGGATTACTTTGACGAAGAGCAAGAACACATTC
AAACATTGATAGCGCTCTCGGGTGACACCACGAAATTCTACGACACATGC
CGATGGGTAAGAGCACTGCTTTGGAACCTACAGATGTACGTAGACGGGAA
CTGTGGGGACTATTACTTTCAATATGGAAAGCCATATGGCCCACCTATCG
AAGAGATTTTGAAGTACATTCGCATTCATGATGGGGACCCATTCCTAATT
CAAGCTCCAATTTCGCGCTCAAGGCCACTTCTGCCACACGAAGCTGCTAT
GGCAGTTCTCCCAAAGCATGCCAAGCACCTGCTCCCCGTTCCGTTGCAAA
GAATGTATGATAATCCTGCGATGTTGAAAAAAATATTCACTGGTAAAGAC
GAAGTGAACGTGGCAAGCATGGTGACCGAGATCAGTCGCATACCAGAATC
GGAGTTCAGCACAGAAGAGTTACTGAGGACAGTGTTTGGCTCACCGATTC
TTTTGCGGCTACCGCGTCTAAACGACAGCGTTCAATACATGAACCCAAGA
GTCAAAAAGCCAGGTCAGAGATTTGAAGAGGTGCGGCACCGACCGGTAAT
ATATCGCGTTCCTTTTACTATGACTACTCTTCCTCCTTGCTATGAGTGGC
CGAAAGGTTCCATCCCAAGCATGTTAGACTTATCGTACAAAACCGTCAGA
GGATCTCTACTGAGGGCGAAGAACAATGTCCCTGCTGAAAACAACGGAAG
CGCAAGCAAGTTGAGCGAAAGGCCGCAGCGAAGAACCCATCGAGGTGTGA
GACACATTCGACCGCGGACTTCGCCATCGAGGAGGGACTATCCTACGAAG
CCTCACAGCTGA

protein sequence of Gcaud8093.t1

>Gcaud8093.t1 ID=Gcaud8093.t1|Name=Gcaud8093.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=654bp
MGIIGFQKWFLGTFPEVVRVQHGPKFGEVYDHVAFDINQILHQVLRRATN
RQTLAAAIFRELDQILKNCVPRKSVFFAFDGPAPLAKLVTQRRRRRKKTT
EYVSDYVDENGVLRKPKFARPAIDALEMTPGVETLYFVRDSVEYWAYSRL
QNDRKYRNVDIRISGADVPGEGELKLVDYCRTGTRGKRQNYVISVWELAR
TFERIFPNESSSVRLDFVLLAILNGNDYIPKVRGISLTRTWRRYVSLKLV
SKGGDLPPFHGHSLVDAEKRTLNWPMFYALMDSVGVPVPSIAEAEQEKRM
GAEMSPVVRKKQGYMSMSDSEVEEHIVYTGNEDGIPMDRLDDGPNSEEIE
SASEGSTTDSEDSGSDFAEKEDEDYFDEEQEHIQTLIALSGDTTKFYDTC
RWVRALLWNLQMYVDGNCGDYYFQYGKPYGPPIEEILKYIRIHDGDPFLI
QAPISRSRPLLPHEAAMAVLPKHAKHLLPVPLQRMYDNPAMLKKIFTGKD
EVNVASMVTEISRIPESEFSTEELLRTVFGSPILLRLPRLNDSVQYMNPR
VKKPGQRFEEVRHRPVIYRVPFTMTTLPPCYEWPKGSIPSMLDLSYKTVR
GSLLRAKNNVPAENNGSASKLSERPQRRTHRGVRHIRPRTSPSRRDYPTK
PHS*

mRNA from alignment at NODE_211_length_36859_cov_4.689676:16756..19016-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8093.t1 ID=Gcaud8093.t1|Name=Gcaud8093.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2261bp|location=Sequence derived from alignment at NODE_211_length_36859_cov_4.689676:16756..19016- (Gracilaria caudata M_176_S67 male)
ATGGGCATCATTGGCTTTCAGAAATGGTTTCTTGGCACCTTTCCTGAGGT
TGTCAGAGTCCAGCACGGCCCCAAATTTGGGGAAGTATACGATCATGGTG
AGTTGAATCTCAGCAACTGCACTAGTCACAATCCCCCTGGTTGTGCTAAC
GTTCACGATCTAATCATCTTCAAAACCTGTGTTTACAGTCGCATTCGACA
TCAATCAGATTCTACATCAGGTGCTACGGCGCGCTACCAACAGACAGACT
CTGGCTGCCGCTATCTTCCGTGAACTTGACCAGATCTTGAAAAACTGCGT
TCCAAGGAAGTCAGTTTTCTTTGCTTTTGACGGTCCAGCTCCGCTGGCGA
AGCTGGTGACACAGCGACGACGCCGAAGAAAGAAGACCACAGAGTATGTA
TCCGACTACGTTGACGAGAATGGAGTGCTCCGTAAACCGAAATTCGCCAG
ACCAGCTATCGATGCCCTAGAGATGACTCCCGGCGTCGAAACTTTATACT
TCGTGCGCGACTCAGTAGAGTACTGGGCTTATTCGCGTTTGCAAAATGAT
CGGAAGTATCGCAACGTCGACATTCGCATTTCCGGTGCTGATGTGCCCGG
TGAGGGTGAATTGAAGCTCGTCGACTATTGCCGCACAGGTAAATTTCCGC
CAACGGATTCGGTTGTGGTTGTGGGTGGAGATGCGGACATTGTTCTTCAA
GGGCTTACAACCATTCCAATCCGAAATTTCTTCGTCTATTTGCGAAACTT
TGCAGGAACGCGGGGTAAAAGGCAGAACTACGTCATCAGTGTTTGGGAAC
TGGCGCGAACATTTGAACGTATCTTTCCGAACGAATCGTCAAGCGTACGT
CTCGACTTTGTGCTTCTAGCGATTTTGAATGGTAACGGTAAGTTCACATG
TAAAGTACTCGCTGCTAGATCGTTCAAGCTTGTCTGCGACGCGCCGGAAG
CCCAGTTTCTGACTTTAGCTCTGCATAGATTACATTCCCAAAGTTCGAGG
CATTTCTCTTACACGGACATGGCGTCGCTACGTGAGCTTGAAGTTGGTTT
CGAAGGGCGGGGATTTACCGCCTTTTCACGGCCATTCTCTTGTTGATGCG
GAAAAGCGAACCCTGAACTGGCCCATGTTTTACGCGTTGATGGATAGCGT
TGGTGTGCCTGTGCCATCCATTGCCGAAGCGGAGCAAGAGAAGCGTATGG
GGGCAGAAATGTCTCCTGTTGTCCGAAAGAAGCAAGGTTACATGAGTATG
TCGGATTCTGAAGTGGAAGAGCACATTGTATATACTGGTAATGAAGATGG
AATTCCCATGGATCGTCTCGACGATGGTCCAAACTCCGAGGAGATCGAGT
CTGCTTCTGAAGGGAGTACTACAGACTCAGAAGATAGCGGATCTGACTTT
GCGGAGAAAGAAGATGAGGATTACTTTGACGAAGAGCAAGAACACATTCA
AACATTGATAGCGCTCTCGGGTGACACCACGAAATTCTACGACACATGCC
GATGGGTAAGAGCACTGCTTTGGAACCTACAGATGTACGTAGACGGGAAC
TGTGGGGACTATTACTTTCAATATGGAAAGCCATATGGCCCACCTATCGA
AGAGATTTTGAAGTACATTCGCATTCATGATGGGGACCCATTCCTAATTC
AAGCTCCAATTTCGCGCTCAAGGCCACTTCTGCCACACGAAGCTGCTATG
GCAGTTCTCCCAAAGCATGCCAAGCACCTGCTCCCCGTTCCGTTGCAAAG
AATGTATGATAATCCTGCGATGTTGAAAAAAATATTCACTGGTAAAGACG
AAGTGAACGTGGCAAGCATGGTGACCGAGATCAGTCGCATACCAGAATCG
GAGTTCAGCACAGAAGAGTTACTGAGGACAGTGTTTGGCTCACCGATTCT
TTTGCGGCTACCGCGTCTAAACGACAGCGTTCAATACATGAACCCAAGAG
TCAAAAAGCCAGGTCAGAGATTTGAAGAGGTGCGGCACCGACCGGTAATA
TATCGCGTTCCTTTTACTATGACTACTCTTCCTCCTTGCTATGAGTGGCC
GAAAGGTTCCATCCCAAGCATGTTAGACTTATCGTACAAAACCGTCAGAG
GATCTCTACTGAGGGCGAAGAACAATGTCCCTGCTGAAAACAACGGAAGC
GCAAGCAAGTTGAGCGAAAGGCCGCAGCGAAGAACCCATCGAGGTGTGAG
ACACATTCGACCGCGGACTTCGCCATCGAGGAGGGACTATCCTACGAAGC
CTCACAGCTGA

Coding sequence (CDS) from alignment at NODE_211_length_36859_cov_4.689676:16756..19016-

>Gcaud8093.t1 ID=Gcaud8093.t1|Name=Gcaud8093.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1962bp|location=Sequence derived from alignment at NODE_211_length_36859_cov_4.689676:16756..19016- (Gracilaria caudata M_176_S67 male)
ATGGGCATCATTGGCTTTCAGAAATGGTTTCTTGGCACCTTTCCTGAGGT
TGTCAGAGTCCAGCACGGCCCCAAATTTGGGGAAGTATACGATCATGTCG
CATTCGACATCAATCAGATTCTACATCAGGTGCTACGGCGCGCTACCAAC
AGACAGACTCTGGCTGCCGCTATCTTCCGTGAACTTGACCAGATCTTGAA
AAACTGCGTTCCAAGGAAGTCAGTTTTCTTTGCTTTTGACGGTCCAGCTC
CGCTGGCGAAGCTGGTGACACAGCGACGACGCCGAAGAAAGAAGACCACA
GAGTATGTATCCGACTACGTTGACGAGAATGGAGTGCTCCGTAAACCGAA
ATTCGCCAGACCAGCTATCGATGCCCTAGAGATGACTCCCGGCGTCGAAA
CTTTATACTTCGTGCGCGACTCAGTAGAGTACTGGGCTTATTCGCGTTTG
CAAAATGATCGGAAGTATCGCAACGTCGACATTCGCATTTCCGGTGCTGA
TGTGCCCGGTGAGGGTGAATTGAAGCTCGTCGACTATTGCCGCACAGGAA
CGCGGGGTAAAAGGCAGAACTACGTCATCAGTGTTTGGGAACTGGCGCGA
ACATTTGAACGTATCTTTCCGAACGAATCGTCAAGCGTACGTCTCGACTT
TGTGCTTCTAGCGATTTTGAATGGTAACGATTACATTCCCAAAGTTCGAG
GCATTTCTCTTACACGGACATGGCGTCGCTACGTGAGCTTGAAGTTGGTT
TCGAAGGGCGGGGATTTACCGCCTTTTCACGGCCATTCTCTTGTTGATGC
GGAAAAGCGAACCCTGAACTGGCCCATGTTTTACGCGTTGATGGATAGCG
TTGGTGTGCCTGTGCCATCCATTGCCGAAGCGGAGCAAGAGAAGCGTATG
GGGGCAGAAATGTCTCCTGTTGTCCGAAAGAAGCAAGGTTACATGAGTAT
GTCGGATTCTGAAGTGGAAGAGCACATTGTATATACTGGTAATGAAGATG
GAATTCCCATGGATCGTCTCGACGATGGTCCAAACTCCGAGGAGATCGAG
TCTGCTTCTGAAGGGAGTACTACAGACTCAGAAGATAGCGGATCTGACTT
TGCGGAGAAAGAAGATGAGGATTACTTTGACGAAGAGCAAGAACACATTC
AAACATTGATAGCGCTCTCGGGTGACACCACGAAATTCTACGACACATGC
CGATGGGTAAGAGCACTGCTTTGGAACCTACAGATGTACGTAGACGGGAA
CTGTGGGGACTATTACTTTCAATATGGAAAGCCATATGGCCCACCTATCG
AAGAGATTTTGAAGTACATTCGCATTCATGATGGGGACCCATTCCTAATT
CAAGCTCCAATTTCGCGCTCAAGGCCACTTCTGCCACACGAAGCTGCTAT
GGCAGTTCTCCCAAAGCATGCCAAGCACCTGCTCCCCGTTCCGTTGCAAA
GAATGTATGATAATCCTGCGATGTTGAAAAAAATATTCACTGGTAAAGAC
GAAGTGAACGTGGCAAGCATGGTGACCGAGATCAGTCGCATACCAGAATC
GGAGTTCAGCACAGAAGAGTTACTGAGGACAGTGTTTGGCTCACCGATTC
TTTTGCGGCTACCGCGTCTAAACGACAGCGTTCAATACATGAACCCAAGA
GTCAAAAAGCCAGGTCAGAGATTTGAAGAGGTGCGGCACCGACCGGTAAT
ATATCGCGTTCCTTTTACTATGACTACTCTTCCTCCTTGCTATGAGTGGC
CGAAAGGTTCCATCCCAAGCATGTTAGACTTATCGTACAAAACCGTCAGA
GGATCTCTACTGAGGGCGAAGAACAATGTCCCTGCTGAAAACAACGGAAG
CGCAAGCAAGTTGAGCGAAAGGCCGCAGCGAAGAACCCATCGAGGTGTGA
GACACATTCGACCGCGGACTTCGCCATCGAGGAGGGACTATCCTACGAAG
CCTCACAGCTGA