Gcaud2383.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2383.t1
Unique Name	Gcaud2383.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	641

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_2102_length_6852_cov_3.529360	contig	NODE_2102_length_6852_cov_3.529360:4517..6439 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705995.1
PFAMs	Rav1p_C,WD40
Max annot lvl	2759\|Eukaryota
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0009987,GO:0016043,GO:0019725,GO:0022607,GO:0030003,GO:0030004,GO:0030641,GO:0032991,GO:0034622,GO:0042592,GO:0043291,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045851,GO:0048878,GO:0050801,GO:0051452,GO:0051453,GO:0055067,GO:0055080,GO:0055082,GO:0065003,GO:0065007,GO:0065008,GO:0070070,GO:0070071,GO:0070072,GO:0071840,GO:0098771
Evalue	2.78e-57
EggNOG OGs	KOG1064@1\|root,KOG1064@2759\|Eukaryota
Description	vacuolar proton-transporting V-type ATPase complex assembly
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2383	Gcaud2383	Gracilaria caudata M_176_S67 male	gene	NODE_2102_length_6852_cov_3.529360 4517..6439 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2383.t1.stop1	Gcaud2383.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_2102_length_6852_cov_3.529360 4517..4519 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2383.t1.CDS1	Gcaud2383.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_2102_length_6852_cov_3.529360 4517..6439 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2383.t1.exon1	Gcaud2383.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_2102_length_6852_cov_3.529360 4517..6439 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2383.t1.start1	Gcaud2383.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_2102_length_6852_cov_3.529360 6437..6439 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2383.t1	Gcaud2383.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_2102_length_6852_cov_3.529360 4517..6439 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_2102_length_6852_cov_3.529360:4517..6439-
coding sequence from alignment at NODE_2102_length_6852_cov_3.529360:4517..6439-

mRNA sequence

>Gcaud2383.t1 ID=Gcaud2383.t1|Name=Gcaud2383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=641bp
MLSVSADDPLAVIRIHPALSSTLGAASAAYLCGHLASHAADFARRTSEAH
KHKSHRSSHSLLAIDCEEGYDNSFRLVRASEMLEQLAEDAMSQWVPLRGF
GSEAQANNSAQLDEAAGAFVDLWTALGCLPEYAPMLSEAATVAAAEMAAA
ASKAAIEAAEQKNGGRRRRKKNAQKGVGSTAAKEGLKLFDTTSADSLYGA
YPVRFSSSAQGPWSGKGRNASLYREDRALFRTLCVSATDPPAIIVATPRG
IQEIVPSSYTTMPAGFRSHYKSKREKNGEEKDERLEALEKDRDRESTESA
PDDDDSFLSSFDGFGEGPYVPLDMSGQSEANYSQRSSHSRGRKAVWRHQV
EATTLASHPLRRRFASGGTDGVVRLWDFADPISLASFREDRFGRVTDLCF
SAYGNTLMAVYSSGNVTIWDESDMYSSRRRKESGTSRAKLVRAFDNRIAS
GGTFLDERHTIAVVGEATAPPSVGHSLRIFDTREAHSSFHASWSAAVNHQ
SEARCLALLEDRMRVVTGGLDGSLSVVDIRTKKCVAELPAHDSEVTCLAL
EVPRGRALVSGSSNGEIKMWDSRTLLQLDVIQEAHRPTRHYWSGNGFGGL
VGIYGTQGLALTDRSLISCGGDGVVKIWGPGWSDFDLSVV*

spliced messenger RNA

>Gcaud2383.t1 ID=Gcaud2383.t1|Name=Gcaud2383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at NODE_2102_length_6852_cov_3.529360:4517..6439- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCGGTCAGTGCCGACGACCCTCTCGCAGTGATCCGGATTCATCC
CGCCCTTAGTTCTACGCTTGGTGCTGCTTCTGCAGCGTACTTGTGTGGTC
ACTTGGCATCGCATGCTGCGGACTTTGCCCGGAGAACATCCGAAGCTCAC
AAACATAAGTCTCATCGAAGTTCGCACTCTCTCTTGGCAATAGATTGTGA
AGAGGGTTATGACAATTCGTTTAGACTGGTACGGGCTTCTGAAATGCTCG
AGCAACTCGCGGAAGATGCGATGTCGCAATGGGTGCCCTTACGTGGATTT
GGCTCAGAAGCGCAAGCAAATAACTCTGCTCAACTCGACGAAGCTGCAGG
CGCTTTTGTTGACCTCTGGACGGCCCTAGGCTGCCTGCCGGAGTATGCTC
CTATGCTCTCCGAAGCAGCGACAGTGGCCGCAGCGGAAATGGCTGCAGCT
GCTTCCAAGGCGGCAATAGAGGCCGCGGAACAAAAGAACGGAGGCCGGAG
AAGGCGTAAGAAGAACGCGCAAAAGGGTGTGGGAAGCACTGCTGCGAAAG
AGGGATTGAAGCTGTTCGATACAACTTCTGCAGATTCTTTATATGGAGCA
TATCCGGTTCGATTCTCATCTTCCGCTCAGGGCCCATGGTCGGGGAAAGG
AAGAAATGCATCGCTTTACCGCGAGGACAGAGCGCTGTTCAGGACACTGT
GCGTAAGCGCAACGGACCCTCCAGCAATTATTGTTGCGACACCGCGAGGG
ATACAAGAAATCGTTCCTTCTTCGTACACAACGATGCCAGCGGGATTTCG
TTCGCACTACAAATCCAAACGCGAAAAGAATGGTGAGGAAAAGGACGAAC
GGTTAGAGGCTTTGGAAAAAGACAGGGATCGGGAGTCGACGGAGAGCGCC
CCCGACGACGACGATTCTTTCTTGAGTTCATTTGATGGGTTTGGTGAAGG
CCCATACGTGCCTCTGGACATGAGCGGGCAGAGTGAAGCGAATTACTCGC
AACGGTCAAGTCACAGCCGTGGACGAAAGGCGGTGTGGAGACACCAAGTG
GAAGCGACAACGCTAGCGTCACATCCGCTTCGGCGAAGGTTTGCTTCTGG
GGGAACGGACGGGGTGGTTCGACTATGGGATTTTGCAGATCCGATTTCGC
TAGCGTCGTTCAGAGAGGATCGCTTCGGACGCGTGACTGATTTGTGCTTC
TCTGCATACGGTAACACGCTGATGGCAGTTTATTCGTCCGGTAACGTGAC
GATTTGGGATGAGTCGGATATGTACAGTTCGAGACGGCGGAAAGAAAGTG
GGACAAGTCGAGCGAAGCTGGTTCGTGCGTTTGACAATCGTATTGCGTCG
GGCGGAACGTTCCTTGACGAGCGACACACGATTGCTGTGGTTGGGGAAGC
CACGGCGCCTCCGTCTGTGGGACATTCGCTGCGCATTTTCGACACGCGTG
AGGCGCATTCAAGCTTTCACGCGAGCTGGAGCGCGGCGGTGAACCATCAA
AGCGAAGCTCGGTGTCTGGCGTTGTTGGAGGATCGAATGAGGGTTGTGAC
AGGCGGGTTGGACGGTTCGCTCTCGGTAGTGGACATCCGCACGAAGAAAT
GCGTGGCGGAGCTGCCAGCGCACGATAGTGAGGTGACATGCCTGGCGCTT
GAGGTGCCGCGCGGACGGGCTTTGGTGTCGGGTAGCTCGAACGGGGAGAT
CAAGATGTGGGATTCGCGCACGCTTCTGCAGCTAGACGTGATCCAAGAGG
CACATCGTCCCACTCGACATTACTGGAGCGGCAACGGGTTTGGGGGATTG
GTTGGTATTTACGGAACGCAGGGGCTGGCTCTAACAGATCGAAGCCTGAT
TTCATGCGGCGGCGACGGGGTGGTGAAGATATGGGGCCCGGGGTGGAGCG
ACTTTGACCTTAGCGTTGTATAA

protein sequence of Gcaud2383.t1

>Gcaud2383.t1 ID=Gcaud2383.t1|Name=Gcaud2383.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=641bp
MLSVSADDPLAVIRIHPALSSTLGAASAAYLCGHLASHAADFARRTSEAH
KHKSHRSSHSLLAIDCEEGYDNSFRLVRASEMLEQLAEDAMSQWVPLRGF
GSEAQANNSAQLDEAAGAFVDLWTALGCLPEYAPMLSEAATVAAAEMAAA
ASKAAIEAAEQKNGGRRRRKKNAQKGVGSTAAKEGLKLFDTTSADSLYGA
YPVRFSSSAQGPWSGKGRNASLYREDRALFRTLCVSATDPPAIIVATPRG
IQEIVPSSYTTMPAGFRSHYKSKREKNGEEKDERLEALEKDRDRESTESA
PDDDDSFLSSFDGFGEGPYVPLDMSGQSEANYSQRSSHSRGRKAVWRHQV
EATTLASHPLRRRFASGGTDGVVRLWDFADPISLASFREDRFGRVTDLCF
SAYGNTLMAVYSSGNVTIWDESDMYSSRRRKESGTSRAKLVRAFDNRIAS
GGTFLDERHTIAVVGEATAPPSVGHSLRIFDTREAHSSFHASWSAAVNHQ
SEARCLALLEDRMRVVTGGLDGSLSVVDIRTKKCVAELPAHDSEVTCLAL
EVPRGRALVSGSSNGEIKMWDSRTLLQLDVIQEAHRPTRHYWSGNGFGGL
VGIYGTQGLALTDRSLISCGGDGVVKIWGPGWSDFDLSVV*

mRNA from alignment at NODE_2102_length_6852_cov_3.529360:4517..6439-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2383.t1 ID=Gcaud2383.t1|Name=Gcaud2383.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1923bp|location=Sequence derived from alignment at NODE_2102_length_6852_cov_3.529360:4517..6439- (Gracilaria caudata M_176_S67 male)
ATGCTTTCGGTCAGTGCCGACGACCCTCTCGCAGTGATCCGGATTCATCC
CGCCCTTAGTTCTACGCTTGGTGCTGCTTCTGCAGCGTACTTGTGTGGTC
ACTTGGCATCGCATGCTGCGGACTTTGCCCGGAGAACATCCGAAGCTCAC
AAACATAAGTCTCATCGAAGTTCGCACTCTCTCTTGGCAATAGATTGTGA
AGAGGGTTATGACAATTCGTTTAGACTGGTACGGGCTTCTGAAATGCTCG
AGCAACTCGCGGAAGATGCGATGTCGCAATGGGTGCCCTTACGTGGATTT
GGCTCAGAAGCGCAAGCAAATAACTCTGCTCAACTCGACGAAGCTGCAGG
CGCTTTTGTTGACCTCTGGACGGCCCTAGGCTGCCTGCCGGAGTATGCTC
CTATGCTCTCCGAAGCAGCGACAGTGGCCGCAGCGGAAATGGCTGCAGCT
GCTTCCAAGGCGGCAATAGAGGCCGCGGAACAAAAGAACGGAGGCCGGAG
AAGGCGTAAGAAGAACGCGCAAAAGGGTGTGGGAAGCACTGCTGCGAAAG
AGGGATTGAAGCTGTTCGATACAACTTCTGCAGATTCTTTATATGGAGCA
TATCCGGTTCGATTCTCATCTTCCGCTCAGGGCCCATGGTCGGGGAAAGG
AAGAAATGCATCGCTTTACCGCGAGGACAGAGCGCTGTTCAGGACACTGT
GCGTAAGCGCAACGGACCCTCCAGCAATTATTGTTGCGACACCGCGAGGG
ATACAAGAAATCGTTCCTTCTTCGTACACAACGATGCCAGCGGGATTTCG
TTCGCACTACAAATCCAAACGCGAAAAGAATGGTGAGGAAAAGGACGAAC
GGTTAGAGGCTTTGGAAAAAGACAGGGATCGGGAGTCGACGGAGAGCGCC
CCCGACGACGACGATTCTTTCTTGAGTTCATTTGATGGGTTTGGTGAAGG
CCCATACGTGCCTCTGGACATGAGCGGGCAGAGTGAAGCGAATTACTCGC
AACGGTCAAGTCACAGCCGTGGACGAAAGGCGGTGTGGAGACACCAAGTG
GAAGCGACAACGCTAGCGTCACATCCGCTTCGGCGAAGGTTTGCTTCTGG
GGGAACGGACGGGGTGGTTCGACTATGGGATTTTGCAGATCCGATTTCGC
TAGCGTCGTTCAGAGAGGATCGCTTCGGACGCGTGACTGATTTGTGCTTC
TCTGCATACGGTAACACGCTGATGGCAGTTTATTCGTCCGGTAACGTGAC
GATTTGGGATGAGTCGGATATGTACAGTTCGAGACGGCGGAAAGAAAGTG
GGACAAGTCGAGCGAAGCTGGTTCGTGCGTTTGACAATCGTATTGCGTCG
GGCGGAACGTTCCTTGACGAGCGACACACGATTGCTGTGGTTGGGGAAGC
CACGGCGCCTCCGTCTGTGGGACATTCGCTGCGCATTTTCGACACGCGTG
AGGCGCATTCAAGCTTTCACGCGAGCTGGAGCGCGGCGGTGAACCATCAA
AGCGAAGCTCGGTGTCTGGCGTTGTTGGAGGATCGAATGAGGGTTGTGAC
AGGCGGGTTGGACGGTTCGCTCTCGGTAGTGGACATCCGCACGAAGAAAT
GCGTGGCGGAGCTGCCAGCGCACGATAGTGAGGTGACATGCCTGGCGCTT
GAGGTGCCGCGCGGACGGGCTTTGGTGTCGGGTAGCTCGAACGGGGAGAT
CAAGATGTGGGATTCGCGCACGCTTCTGCAGCTAGACGTGATCCAAGAGG
CACATCGTCCCACTCGACATTACTGGAGCGGCAACGGGTTTGGGGGATTG
GTTGGTATTTACGGAACGCAGGGGCTGGCTCTAACAGATCGAAGCCTGAT
TTCATGCGGCGGCGACGGGGTGGTGAAGATATGGGGCCCGGGGTGGAGCG
ACTTTGACCTTAGCGTTGTATAA

Coding sequence (CDS) from alignment at NODE_2102_length_6852_cov_3.529360:4517..6439-

>Gcaud2383.t1 ID=Gcaud2383.t1|Name=Gcaud2383.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1923bp|location=Sequence derived from alignment at NODE_2102_length_6852_cov_3.529360:4517..6439- (Gracilaria caudata M_176_S67 male)
ATGCTTTCGGTCAGTGCCGACGACCCTCTCGCAGTGATCCGGATTCATCC
CGCCCTTAGTTCTACGCTTGGTGCTGCTTCTGCAGCGTACTTGTGTGGTC
ACTTGGCATCGCATGCTGCGGACTTTGCCCGGAGAACATCCGAAGCTCAC
AAACATAAGTCTCATCGAAGTTCGCACTCTCTCTTGGCAATAGATTGTGA
AGAGGGTTATGACAATTCGTTTAGACTGGTACGGGCTTCTGAAATGCTCG
AGCAACTCGCGGAAGATGCGATGTCGCAATGGGTGCCCTTACGTGGATTT
GGCTCAGAAGCGCAAGCAAATAACTCTGCTCAACTCGACGAAGCTGCAGG
CGCTTTTGTTGACCTCTGGACGGCCCTAGGCTGCCTGCCGGAGTATGCTC
CTATGCTCTCCGAAGCAGCGACAGTGGCCGCAGCGGAAATGGCTGCAGCT
GCTTCCAAGGCGGCAATAGAGGCCGCGGAACAAAAGAACGGAGGCCGGAG
AAGGCGTAAGAAGAACGCGCAAAAGGGTGTGGGAAGCACTGCTGCGAAAG
AGGGATTGAAGCTGTTCGATACAACTTCTGCAGATTCTTTATATGGAGCA
TATCCGGTTCGATTCTCATCTTCCGCTCAGGGCCCATGGTCGGGGAAAGG
AAGAAATGCATCGCTTTACCGCGAGGACAGAGCGCTGTTCAGGACACTGT
GCGTAAGCGCAACGGACCCTCCAGCAATTATTGTTGCGACACCGCGAGGG
ATACAAGAAATCGTTCCTTCTTCGTACACAACGATGCCAGCGGGATTTCG
TTCGCACTACAAATCCAAACGCGAAAAGAATGGTGAGGAAAAGGACGAAC
GGTTAGAGGCTTTGGAAAAAGACAGGGATCGGGAGTCGACGGAGAGCGCC
CCCGACGACGACGATTCTTTCTTGAGTTCATTTGATGGGTTTGGTGAAGG
CCCATACGTGCCTCTGGACATGAGCGGGCAGAGTGAAGCGAATTACTCGC
AACGGTCAAGTCACAGCCGTGGACGAAAGGCGGTGTGGAGACACCAAGTG
GAAGCGACAACGCTAGCGTCACATCCGCTTCGGCGAAGGTTTGCTTCTGG
GGGAACGGACGGGGTGGTTCGACTATGGGATTTTGCAGATCCGATTTCGC
TAGCGTCGTTCAGAGAGGATCGCTTCGGACGCGTGACTGATTTGTGCTTC
TCTGCATACGGTAACACGCTGATGGCAGTTTATTCGTCCGGTAACGTGAC
GATTTGGGATGAGTCGGATATGTACAGTTCGAGACGGCGGAAAGAAAGTG
GGACAAGTCGAGCGAAGCTGGTTCGTGCGTTTGACAATCGTATTGCGTCG
GGCGGAACGTTCCTTGACGAGCGACACACGATTGCTGTGGTTGGGGAAGC
CACGGCGCCTCCGTCTGTGGGACATTCGCTGCGCATTTTCGACACGCGTG
AGGCGCATTCAAGCTTTCACGCGAGCTGGAGCGCGGCGGTGAACCATCAA
AGCGAAGCTCGGTGTCTGGCGTTGTTGGAGGATCGAATGAGGGTTGTGAC
AGGCGGGTTGGACGGTTCGCTCTCGGTAGTGGACATCCGCACGAAGAAAT
GCGTGGCGGAGCTGCCAGCGCACGATAGTGAGGTGACATGCCTGGCGCTT
GAGGTGCCGCGCGGACGGGCTTTGGTGTCGGGTAGCTCGAACGGGGAGAT
CAAGATGTGGGATTCGCGCACGCTTCTGCAGCTAGACGTGATCCAAGAGG
CACATCGTCCCACTCGACATTACTGGAGCGGCAACGGGTTTGGGGGATTG
GTTGGTATTTACGGAACGCAGGGGCTGGCTCTAACAGATCGAAGCCTGAT
TTCATGCGGCGGCGACGGGGTGGTGAAGATATGGGGCCCGGGGTGGAGCG
ACTTTGACCTTAGCGTTGTATAA