Gcaud375.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud375.t1
Unique NameGcaud375.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length150
Homology
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BLAST of Gcaud375.t1 vs. uniprot
Match: A0A2V3IPC7_9FLOR (Translation initiation factor IF-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPC7_9FLOR)

HSP 1 Score: 91.3 bits (225), Expect = 1.040e-19
Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = 0 
Query:    4 RRHSVPTQIRFWPLTDRNDIRFKLKHAAQFLVDEYRVTLYINFKRGQGNLKKSTTHSLINAAFALASLGAFWEVAPGVSVLDLFKS--DEEQLKDQAQQRKPLELLFHQLPKTQRKKLSTE 122
            ++ SV  QIRF P+TD +D+  K++HA +FL++ YRV +Y+ F+RG G LK+    +LI AA  L++ G    +  G +V  LF+   D EQ +   Q R+PL +    LPK QR+KL++E
Sbjct:  119 KKQSVLKQIRFSPVTDPHDMHIKMQHAQRFLLEGYRVKIYVQFRRGHGKLKRDAKQALIKAAHQLSAYGVVQGIPSGGTVDSLFEQPPDAEQHE---QPRRPLHIFIQPLPKQQREKLTSE 236
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BLAST of Gcaud375.t1 vs. uniprot
Match: A0A5J4Z8N6_PORPP (Translation initiation factor IF-3 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8N6_PORPP)

HSP 1 Score: 55.8 bits (133), Expect = 2.230e-6
Identity = 29/88 (32.95%), Postives = 49/88 (55.68%), Query Frame = 0 
Query:    5 RHSVPTQIRFWPLTDRNDIRFKLKHAAQFLVDEYRVTLYINFKRGQGNLKKSTTHSLINAAFALASLGAFWEVAPGVSVLDLFKSDEE 92
            + + P +IR  P T+++D   K+K   QFL +  RV +++ F++GQGNL++S  ++L  A   L S G    +    ++ D  K D E
Sbjct:  174 KQAAPKEIRLGPATEQHDFDIKMKKVIQFLEEGRRVRVFVQFRKGQGNLQESALNNLQKAGTLLESHGVIERMT---TIEDQRKKDAE 258
The following BLAST results are available for this feature:
BLAST of Gcaud375.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IPC7_9FLOR1.040e-1941.32Translation initiation factor IF-3 n=1 Tax=Gracila... [more]
A0A5J4Z8N6_PORPP2.230e-632.95Translation initiation factor IF-3 n=1 Tax=Porphyr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilyGENE3D3.30.110.10coord: 11..74
e-value: 5.4E-6
score: 28.2
IPR036788Translation initiation factor 3 (IF-3), C-terminal domain superfamilySUPERFAMILY55200Translation initiation factor IF3, C-terminal domaincoord: 11..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_209_length_36971_cov_4.752467contigNODE_209_length_36971_cov_4.752467:29012..29461 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud375.t1Gcaud375.t1Gracilaria caudata M_176_S67 malemRNANODE_209_length_36971_cov_4.752467 29012..29461 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud375.t1 ID=Gcaud375.t1|Name=Gcaud375.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=150bp
MEHRRHSVPTQIRFWPLTDRNDIRFKLKHAAQFLVDEYRVTLYINFKRGQ
GNLKKSTTHSLINAAFALASLGAFWEVAPGVSVLDLFKSDEEQLKDQAQQ
RKPLELLFHQLPKTQRKKLSTETPLVPSTLKLSNSSMLKVRQSKEVSWP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036788T_IF-3_C_sf