Gcaud375.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud375.t1
Unique NameGcaud375.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length150
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_209_length_36971_cov_4.752467contigNODE_209_length_36971_cov_4.752467:29012..29461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog264731.PRU_0594
Preferred nameinfC
PFAMsIF3_C,IF3_N
Max annot lvl976|Bacteroidetes
KEGG koko:K02520
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016020,GO:0016043,GO:0019538,GO:0022411,GO:0032790,GO:0032984,GO:0032988,GO:0034641,GO:0034645,GO:0043021,GO:0043022,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008
Evalue0.000306
EggNOG OGsCOG0290@1|root,COG0290@2|Bacteria,4NIZ5@976|Bacteroidetes,2FNF1@200643|Bacteroidia
DescriptionIF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
COG categoryJ
BRITEko00000,ko03012,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud375Gcaud375Gracilaria caudata M_176_S67 malegeneNODE_209_length_36971_cov_4.752467 29012..29461 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud375.t1.start1Gcaud375.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_209_length_36971_cov_4.752467 29012..29014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud375.t1.CDS1Gcaud375.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_209_length_36971_cov_4.752467 29012..29461 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud375.t1.exon1Gcaud375.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_209_length_36971_cov_4.752467 29012..29461 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud375.t1.stop1Gcaud375.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_209_length_36971_cov_4.752467 29459..29461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud375.t1Gcaud375.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_209_length_36971_cov_4.752467 29012..29461 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud375.t1 ID=Gcaud375.t1|Name=Gcaud375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=150bp
MEHRRHSVPTQIRFWPLTDRNDIRFKLKHAAQFLVDEYRVTLYINFKRGQ
GNLKKSTTHSLINAAFALASLGAFWEVAPGVSVLDLFKSDEEQLKDQAQQ
RKPLELLFHQLPKTQRKKLSTETPLVPSTLKLSNSSMLKVRQSKEVSWP*
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spliced messenger RNA

>Gcaud375.t1 ID=Gcaud375.t1|Name=Gcaud375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp|location=Sequence derived from alignment at NODE_209_length_36971_cov_4.752467:29012..29461+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCACAGGAGGCATTCGGTTCCGACGCAGATCCGATTCTGGCCGCT
TACGGATCGTAATGATATTCGTTTCAAACTCAAGCATGCTGCACAGTTTC
TTGTTGATGAGTATCGCGTCACGTTGTACATAAACTTCAAGAGAGGTCAG
GGCAATCTCAAGAAATCTACCACGCACTCACTTATCAATGCTGCGTTCGC
ACTTGCTTCTTTAGGAGCGTTTTGGGAGGTAGCACCGGGAGTGTCTGTGC
TAGATTTGTTTAAATCTGATGAAGAACAGCTCAAAGACCAAGCGCAGCAA
AGAAAACCTCTGGAACTTTTGTTCCATCAGTTGCCGAAAACTCAGAGGAA
GAAGCTAAGCACCGAGACGCCTTTAGTCCCATCCACCCTTAAGCTTAGTA
ATTCTTCGATGCTTAAAGTTAGACAGTCTAAAGAAGTTTCTTGGCCGTGA
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protein sequence of Gcaud375.t1

>Gcaud375.t1 ID=Gcaud375.t1|Name=Gcaud375.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=150bp
MEHRRHSVPTQIRFWPLTDRNDIRFKLKHAAQFLVDEYRVTLYINFKRGQ
GNLKKSTTHSLINAAFALASLGAFWEVAPGVSVLDLFKSDEEQLKDQAQQ
RKPLELLFHQLPKTQRKKLSTETPLVPSTLKLSNSSMLKVRQSKEVSWP*
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mRNA from alignment at NODE_209_length_36971_cov_4.752467:29012..29461+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud375.t1 ID=Gcaud375.t1|Name=Gcaud375.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp|location=Sequence derived from alignment at NODE_209_length_36971_cov_4.752467:29012..29461+ (Gracilaria caudata M_176_S67 male)
ATGGAGCACAGGAGGCATTCGGTTCCGACGCAGATCCGATTCTGGCCGCT
TACGGATCGTAATGATATTCGTTTCAAACTCAAGCATGCTGCACAGTTTC
TTGTTGATGAGTATCGCGTCACGTTGTACATAAACTTCAAGAGAGGTCAG
GGCAATCTCAAGAAATCTACCACGCACTCACTTATCAATGCTGCGTTCGC
ACTTGCTTCTTTAGGAGCGTTTTGGGAGGTAGCACCGGGAGTGTCTGTGC
TAGATTTGTTTAAATCTGATGAAGAACAGCTCAAAGACCAAGCGCAGCAA
AGAAAACCTCTGGAACTTTTGTTCCATCAGTTGCCGAAAACTCAGAGGAA
GAAGCTAAGCACCGAGACGCCTTTAGTCCCATCCACCCTTAAGCTTAGTA
ATTCTTCGATGCTTAAAGTTAGACAGTCTAAAGAAGTTTCTTGGCCGTGA
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Coding sequence (CDS) from alignment at NODE_209_length_36971_cov_4.752467:29012..29461+

>Gcaud375.t1 ID=Gcaud375.t1|Name=Gcaud375.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=450bp|location=Sequence derived from alignment at NODE_209_length_36971_cov_4.752467:29012..29461+ (Gracilaria caudata M_176_S67 male)
ATGGAGCACAGGAGGCATTCGGTTCCGACGCAGATCCGATTCTGGCCGCT
TACGGATCGTAATGATATTCGTTTCAAACTCAAGCATGCTGCACAGTTTC
TTGTTGATGAGTATCGCGTCACGTTGTACATAAACTTCAAGAGAGGTCAG
GGCAATCTCAAGAAATCTACCACGCACTCACTTATCAATGCTGCGTTCGC
ACTTGCTTCTTTAGGAGCGTTTTGGGAGGTAGCACCGGGAGTGTCTGTGC
TAGATTTGTTTAAATCTGATGAAGAACAGCTCAAAGACCAAGCGCAGCAA
AGAAAACCTCTGGAACTTTTGTTCCATCAGTTGCCGAAAACTCAGAGGAA
GAAGCTAAGCACCGAGACGCCTTTAGTCCCATCCACCCTTAAGCTTAGTA
ATTCTTCGATGCTTAAAGTTAGACAGTCTAAAGAAGTTTCTTGGCCGTGA
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