Gcaud3387.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3387.t1
Unique Name	Gcaud3387.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	287

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_100_length_51433_cov_4.606891	contig	NODE_100_length_51433_cov_4.606891:17217..18077 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38727.Pavir.J13481.1.p
PFAMs	Cation_efflux
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08900,ko:K14692
KEGG TC	2.A.4.4.3,2.A.4.4.5
GOs	GO:0000041,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0008150,GO:0008324,GO:0010035,GO:0010038,GO:0010043,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0022857,GO:0022890,GO:0030001,GO:0032879,GO:0034220,GO:0042221,GO:0042592,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046873,GO:0046915,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0061088,GO:0065007,GO:0065008,GO:0070838,GO:0071577,GO:0071578,GO:0072509,GO:0072511,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098739,GO:0099587
Evalue	6.5e-07
EggNOG OGs	COG1230@1\|root,KOG1484@2759\|Eukaryota,37SDQ@33090\|Viridiplantae,3GBV2@35493\|Streptophyta,3KQY5@4447\|Liliopsida,3IBD4@38820\|Poales
Description	Cation efflux family
COG category	P
BRITE	ko00000,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3387	Gcaud3387	Gracilaria caudata M_176_S67 male	gene	NODE_100_length_51433_cov_4.606891 17217..18077 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3387.t1.start1	Gcaud3387.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_100_length_51433_cov_4.606891 17217..17219 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3387.t1.CDS1	Gcaud3387.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_100_length_51433_cov_4.606891 17217..18077 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3387.t1.exon1	Gcaud3387.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_100_length_51433_cov_4.606891 17217..18077 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3387.t1.stop1	Gcaud3387.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_100_length_51433_cov_4.606891 18075..18077 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3387.t1	Gcaud3387.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_100_length_51433_cov_4.606891 17217..18077 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_100_length_51433_cov_4.606891:17217..18077+
coding sequence from alignment at NODE_100_length_51433_cov_4.606891:17217..18077+

mRNA sequence

>Gcaud3387.t1 ID=Gcaud3387.t1|Name=Gcaud3387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=287bp
MPVLLPSSAQLYASLSLLFASLLLHVSVRDDHPHAIARAALQLVTAVALL
PACRRVKRGSPLRFRWPVLAAFLVCLALLVDAVLRVLTALEVLFYDLRRV
VFRLHPFIVLSRLFVTLSAVFALRTLVSPSSTKHAVPHTPAIRAMYIHAV
AATLANSSDAIGLMVHSAIPSAIFDAFASIFTILVVIPQFRHTTRILMHA
APFGIGSTIGTRRESVMKLDGVLQCGDVHIWEEGEGVIVGTICVVVDVHV
SKSWVLERTARAFDGIVDDLTIQVESCRAQDEHHRL*

spliced messenger RNA

>Gcaud3387.t1 ID=Gcaud3387.t1|Name=Gcaud3387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:17217..18077+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGTCTTGCTGCCGTCTTCTGCGCAGCTTTACGCGTCGCTCAGTCT
TCTGTTCGCGTCGTTATTGCTGCATGTCTCCGTGCGCGATGATCATCCGC
ACGCCATAGCCAGGGCGGCTTTGCAGCTCGTCACCGCCGTTGCGCTCTTG
CCGGCCTGTAGACGCGTGAAAAGGGGCAGTCCTCTACGCTTTCGATGGCC
GGTGCTCGCCGCGTTTTTGGTTTGTCTCGCCTTGTTGGTAGACGCCGTGT
TGAGGGTTCTTACCGCGCTTGAGGTTTTGTTTTACGACTTGCGTCGAGTT
GTGTTTCGGTTACATCCTTTCATTGTGCTGTCGCGCTTGTTTGTAACTCT
TTCGGCCGTGTTTGCATTGCGCACGCTTGTCTCGCCTTCCTCCACCAAGC
ATGCCGTGCCGCACACTCCCGCCATTCGCGCAATGTATATCCATGCCGTC
GCCGCCACCCTTGCTAACTCTTCTGATGCAATTGGACTCATGGTTCACTC
CGCAATCCCTTCTGCAATCTTCGATGCTTTTGCCTCCATATTTACCATCC
TCGTCGTCATTCCACAATTCAGACATACTACTCGAATTCTAATGCATGCC
GCTCCTTTCGGAATTGGCTCCACGATCGGAACAAGAAGGGAATCTGTCAT
GAAATTGGATGGAGTGCTGCAATGTGGAGACGTTCACATCTGGGAAGAGG
GTGAAGGCGTCATCGTCGGTACAATATGCGTGGTTGTCGACGTTCACGTC
AGCAAGTCCTGGGTGCTCGAGAGAACCGCCCGAGCATTCGATGGTATAGT
CGATGACCTCACCATTCAGGTGGAGAGTTGTCGTGCACAAGATGAGCACC
ATCGTTTGTAA

protein sequence of Gcaud3387.t1

>Gcaud3387.t1 ID=Gcaud3387.t1|Name=Gcaud3387.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=287bp
MPVLLPSSAQLYASLSLLFASLLLHVSVRDDHPHAIARAALQLVTAVALL
PACRRVKRGSPLRFRWPVLAAFLVCLALLVDAVLRVLTALEVLFYDLRRV
VFRLHPFIVLSRLFVTLSAVFALRTLVSPSSTKHAVPHTPAIRAMYIHAV
AATLANSSDAIGLMVHSAIPSAIFDAFASIFTILVVIPQFRHTTRILMHA
APFGIGSTIGTRRESVMKLDGVLQCGDVHIWEEGEGVIVGTICVVVDVHV
SKSWVLERTARAFDGIVDDLTIQVESCRAQDEHHRL*

mRNA from alignment at NODE_100_length_51433_cov_4.606891:17217..18077+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3387.t1 ID=Gcaud3387.t1|Name=Gcaud3387.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=861bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:17217..18077+ (Gracilaria caudata M_176_S67 male)
ATGCCCGTCTTGCTGCCGTCTTCTGCGCAGCTTTACGCGTCGCTCAGTCT
TCTGTTCGCGTCGTTATTGCTGCATGTCTCCGTGCGCGATGATCATCCGC
ACGCCATAGCCAGGGCGGCTTTGCAGCTCGTCACCGCCGTTGCGCTCTTG
CCGGCCTGTAGACGCGTGAAAAGGGGCAGTCCTCTACGCTTTCGATGGCC
GGTGCTCGCCGCGTTTTTGGTTTGTCTCGCCTTGTTGGTAGACGCCGTGT
TGAGGGTTCTTACCGCGCTTGAGGTTTTGTTTTACGACTTGCGTCGAGTT
GTGTTTCGGTTACATCCTTTCATTGTGCTGTCGCGCTTGTTTGTAACTCT
TTCGGCCGTGTTTGCATTGCGCACGCTTGTCTCGCCTTCCTCCACCAAGC
ATGCCGTGCCGCACACTCCCGCCATTCGCGCAATGTATATCCATGCCGTC
GCCGCCACCCTTGCTAACTCTTCTGATGCAATTGGACTCATGGTTCACTC
CGCAATCCCTTCTGCAATCTTCGATGCTTTTGCCTCCATATTTACCATCC
TCGTCGTCATTCCACAATTCAGACATACTACTCGAATTCTAATGCATGCC
GCTCCTTTCGGAATTGGCTCCACGATCGGAACAAGAAGGGAATCTGTCAT
GAAATTGGATGGAGTGCTGCAATGTGGAGACGTTCACATCTGGGAAGAGG
GTGAAGGCGTCATCGTCGGTACAATATGCGTGGTTGTCGACGTTCACGTC
AGCAAGTCCTGGGTGCTCGAGAGAACCGCCCGAGCATTCGATGGTATAGT
CGATGACCTCACCATTCAGGTGGAGAGTTGTCGTGCACAAGATGAGCACC
ATCGTTTGTAA

Coding sequence (CDS) from alignment at NODE_100_length_51433_cov_4.606891:17217..18077+

>Gcaud3387.t1 ID=Gcaud3387.t1|Name=Gcaud3387.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=861bp|location=Sequence derived from alignment at NODE_100_length_51433_cov_4.606891:17217..18077+ (Gracilaria caudata M_176_S67 male)
ATGCCCGTCTTGCTGCCGTCTTCTGCGCAGCTTTACGCGTCGCTCAGTCT
TCTGTTCGCGTCGTTATTGCTGCATGTCTCCGTGCGCGATGATCATCCGC
ACGCCATAGCCAGGGCGGCTTTGCAGCTCGTCACCGCCGTTGCGCTCTTG
CCGGCCTGTAGACGCGTGAAAAGGGGCAGTCCTCTACGCTTTCGATGGCC
GGTGCTCGCCGCGTTTTTGGTTTGTCTCGCCTTGTTGGTAGACGCCGTGT
TGAGGGTTCTTACCGCGCTTGAGGTTTTGTTTTACGACTTGCGTCGAGTT
GTGTTTCGGTTACATCCTTTCATTGTGCTGTCGCGCTTGTTTGTAACTCT
TTCGGCCGTGTTTGCATTGCGCACGCTTGTCTCGCCTTCCTCCACCAAGC
ATGCCGTGCCGCACACTCCCGCCATTCGCGCAATGTATATCCATGCCGTC
GCCGCCACCCTTGCTAACTCTTCTGATGCAATTGGACTCATGGTTCACTC
CGCAATCCCTTCTGCAATCTTCGATGCTTTTGCCTCCATATTTACCATCC
TCGTCGTCATTCCACAATTCAGACATACTACTCGAATTCTAATGCATGCC
GCTCCTTTCGGAATTGGCTCCACGATCGGAACAAGAAGGGAATCTGTCAT
GAAATTGGATGGAGTGCTGCAATGTGGAGACGTTCACATCTGGGAAGAGG
GTGAAGGCGTCATCGTCGGTACAATATGCGTGGTTGTCGACGTTCACGTC
AGCAAGTCCTGGGTGCTCGAGAGAACCGCCCGAGCATTCGATGGTATAGT
CGATGACCTCACCATTCAGGTGGAGAGTTGTCGTGCACAAGATGAGCACC
ATCGTTTGTAA