Gcaud1923.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1923.t1
Unique Name	Gcaud1923.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	214

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:16560..17201 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709156.1
Preferred name	PSBP3
PFAMs	PsbP
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02717
KEGG Pathway	ko00195,ko01100,map00195,map01100
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
Evalue	3.48e-48
EggNOG OGs	COG0459@1\|root,2QU2U@2759\|Eukaryota
Description	photosynthesis
COG category	O
BRITE	ko00000,ko00001,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1923	Gcaud1923	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 16560..17201 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1923.t1.start1	Gcaud1923.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 16560..16562 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1923.t1.CDS1	Gcaud1923.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 16560..17201 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1923.t1.exon1	Gcaud1923.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 16560..17201 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1923.t1.stop1	Gcaud1923.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 17199..17201 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1923.t1	Gcaud1923.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 16560..17201 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:16560..17201+
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:16560..17201+

mRNA sequence

>Gcaud1923.t1 ID=Gcaud1923.t1|Name=Gcaud1923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=214bp
MASARGAFIAAQPLPVASGYSSPRVSPRRPAMMAGPCSPQRVSRRTFSTL
LSTLPLIPLLPASAADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYD
IKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRA
IQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREK
LLRGVVDSFRPKL*

spliced messenger RNA

>Gcaud1923.t1 ID=Gcaud1923.t1|Name=Gcaud1923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=642bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:16560..17201+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTGCGAGGGGTGCGTTCATTGCGGCTCAGCCGCTTCCCGTCGC
CTCGGGCTATTCATCGCCGCGAGTTTCTCCCAGACGTCCGGCGATGATGG
CTGGCCCCTGCTCGCCGCAGCGTGTCTCCCGTCGAACGTTCTCCACATTG
CTTTCCACGCTCCCGTTGATTCCGCTGCTGCCCGCGAGCGCGGCGGATAT
CTCGGGGCTGGTGACGCCATACAAGGACTTGCCCAAGGGCTTCACCATTT
TGCGGCCCAACGGATGGAACGAGTTTGAGGCACTCCAGGATAACTACGAC
ATCAAGTGGCAGGACGTGATTCAGCCGCTGGAATTCGTGACCGTGCTCAC
GTCGCCGGTGGCCAGCGATAAGAGTTTGAGCGATCTTGGTTCGGCGGAGT
CTGTTGGCGACAAACTTGCAAAGGCCAGAAGCGGAAAACTCGTGCGCGCC
ATACAAAAGGATATTGACGGAATTCCAGCGTACATGTTGGAGATTAAGAG
AGAAAGTGCACATCAACTAACCCTACTCACAGTGAACAAACAAAAGCTGT
ATTCGGTAAACGCCAGCTGCTCAGAAAAGCGCTGGGGAAAGAGGGAGAAG
CTACTCAGAGGCGTTGTAGATTCTTTCCGACCAAAGCTCTGA

protein sequence of Gcaud1923.t1

>Gcaud1923.t1 ID=Gcaud1923.t1|Name=Gcaud1923.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=214bp
MASARGAFIAAQPLPVASGYSSPRVSPRRPAMMAGPCSPQRVSRRTFSTL
LSTLPLIPLLPASAADISGLVTPYKDLPKGFTILRPNGWNEFEALQDNYD
IKWQDVIQPLEFVTVLTSPVASDKSLSDLGSAESVGDKLAKARSGKLVRA
IQKDIDGIPAYMLEIKRESAHQLTLLTVNKQKLYSVNASCSEKRWGKREK
LLRGVVDSFRPKL*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:16560..17201+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1923.t1 ID=Gcaud1923.t1|Name=Gcaud1923.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=642bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:16560..17201+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCTGCGAGGGGTGCGTTCATTGCGGCTCAGCCGCTTCCCGTCGC
CTCGGGCTATTCATCGCCGCGAGTTTCTCCCAGACGTCCGGCGATGATGG
CTGGCCCCTGCTCGCCGCAGCGTGTCTCCCGTCGAACGTTCTCCACATTG
CTTTCCACGCTCCCGTTGATTCCGCTGCTGCCCGCGAGCGCGGCGGATAT
CTCGGGGCTGGTGACGCCATACAAGGACTTGCCCAAGGGCTTCACCATTT
TGCGGCCCAACGGATGGAACGAGTTTGAGGCACTCCAGGATAACTACGAC
ATCAAGTGGCAGGACGTGATTCAGCCGCTGGAATTCGTGACCGTGCTCAC
GTCGCCGGTGGCCAGCGATAAGAGTTTGAGCGATCTTGGTTCGGCGGAGT
CTGTTGGCGACAAACTTGCAAAGGCCAGAAGCGGAAAACTCGTGCGCGCC
ATACAAAAGGATATTGACGGAATTCCAGCGTACATGTTGGAGATTAAGAG
AGAAAGTGCACATCAACTAACCCTACTCACAGTGAACAAACAAAAGCTGT
ATTCGGTAAACGCCAGCTGCTCAGAAAAGCGCTGGGGAAAGAGGGAGAAG
CTACTCAGAGGCGTTGTAGATTCTTTCCGACCAAAGCTCTGA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:16560..17201+

>Gcaud1923.t1 ID=Gcaud1923.t1|Name=Gcaud1923.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=642bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:16560..17201+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCTGCGAGGGGTGCGTTCATTGCGGCTCAGCCGCTTCCCGTCGC
CTCGGGCTATTCATCGCCGCGAGTTTCTCCCAGACGTCCGGCGATGATGG
CTGGCCCCTGCTCGCCGCAGCGTGTCTCCCGTCGAACGTTCTCCACATTG
CTTTCCACGCTCCCGTTGATTCCGCTGCTGCCCGCGAGCGCGGCGGATAT
CTCGGGGCTGGTGACGCCATACAAGGACTTGCCCAAGGGCTTCACCATTT
TGCGGCCCAACGGATGGAACGAGTTTGAGGCACTCCAGGATAACTACGAC
ATCAAGTGGCAGGACGTGATTCAGCCGCTGGAATTCGTGACCGTGCTCAC
GTCGCCGGTGGCCAGCGATAAGAGTTTGAGCGATCTTGGTTCGGCGGAGT
CTGTTGGCGACAAACTTGCAAAGGCCAGAAGCGGAAAACTCGTGCGCGCC
ATACAAAAGGATATTGACGGAATTCCAGCGTACATGTTGGAGATTAAGAG
AGAAAGTGCACATCAACTAACCCTACTCACAGTGAACAAACAAAAGCTGT
ATTCGGTAAACGCCAGCTGCTCAGAAAAGCGCTGGGGAAAGAGGGAGAAG
CTACTCAGAGGCGTTGTAGATTCTTTCCGACCAAAGCTCTGA