Gcaud1934.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1934.t1
Unique Name	Gcaud1934.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	519

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:33011..34567 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S15_447V6.1
Preferred name	NOP56
PFAMs	NOP5NT,Nop
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14564
KEGG Pathway	ko03008,map03008
Evalue	9.16e-183
EggNOG OGs	COG1498@1\|root,KOG2573@2759\|Eukaryota,37JCN@33090\|Viridiplantae,3GGSS@35493\|Streptophyta
Description	Nucleolar protein
COG category	AJ
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1934	Gcaud1934	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 33011..34567 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1934.t1.start1	Gcaud1934.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 33011..33013 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1934.t1.CDS1	Gcaud1934.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 33011..34567 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1934.t1.exon1	Gcaud1934.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 33011..34567 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1934.t1.stop1	Gcaud1934.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 34565..34567 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1934.t1	Gcaud1934.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 33011..34567 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:33011..34567+
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:33011..34567+

mRNA sequence

>Gcaud1934.t1 ID=Gcaud1934.t1|Name=Gcaud1934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp
MVLYLLFESALGYSLFEVIENDVIASQVDSMQAAIAEYGRFAKMVKLKAF
APFTTAEHALENVNLISEGGVSDFLKNFLETNLPLSKSKHAQLGVHRDPK
LKSSVSDALNSKITVVSDEQCDELLRGIRMHLNRFIDGLKATDAVKAQLG
LAHSYSRSKVKFNVHKADNMIIQSIALLDQLDKDINTFAMRIREWYSWHF
PELIKVVPDNIQYARVVGIVRDKSTLSEDSVPELDKVLMNEDQARSVVSA
AASSMGADISDVDLVNIDMFASRVVQLAEYRVSLHNYLRSKMSVVAPNLA
ALIGEQVGARLISHAGSLTSLAKYPASTVQILGAEKALFRALKTKGKTPK
YGLLYHSTYIGKAKQKNKGRISRYLANKCSIASRMDCFSEVTTDIFGRKL
REQVEDRLRFYESGKAPRKNIDVMHEAVKELEEEQPPSNDVDMKDEGEDK
DKRQEQEGDGDVEMKTPEDLPKKKKKKDKSSSKKDKSSSKKEKSSKDKKR
RRESSSSKEKKAKKKSSS*

spliced messenger RNA

>Gcaud1934.t1 ID=Gcaud1934.t1|Name=Gcaud1934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:33011..34567+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTCTATCTTCTTTTCGAGTCAGCGTTGGGCTACTCCCTATTCGA
AGTTATTGAAAACGATGTCATCGCATCTCAGGTTGACAGTATGCAGGCCG
CCATCGCTGAGTACGGTCGGTTTGCGAAGATGGTAAAGCTCAAGGCCTTT
GCTCCATTTACCACAGCAGAGCATGCGTTAGAGAATGTCAATCTCATTTC
TGAAGGCGGTGTCTCAGATTTTCTCAAGAACTTCTTAGAAACAAACTTAC
CCTTATCCAAATCCAAGCATGCGCAATTGGGAGTTCATCGTGATCCCAAA
TTGAAGAGCTCCGTATCCGATGCACTCAACTCTAAGATCACCGTCGTTTC
GGATGAGCAATGCGATGAATTGCTTCGTGGTATTCGAATGCATCTCAACC
GCTTTATTGATGGTCTCAAGGCCACGGATGCAGTCAAGGCTCAGTTGGGT
CTTGCACACTCTTATTCGAGATCAAAAGTTAAGTTCAATGTGCACAAGGC
TGATAACATGATCATCCAATCTATTGCGTTGCTTGACCAGCTTGACAAGG
ACATTAACACGTTTGCGATGCGTATTCGAGAATGGTATTCATGGCATTTT
CCGGAACTCATCAAAGTGGTACCAGACAATATTCAATATGCCCGAGTGGT
TGGTATCGTACGTGACAAATCTACGCTTTCCGAAGATTCCGTTCCTGAAC
TAGACAAAGTGCTCATGAATGAAGATCAAGCCAGATCTGTTGTAAGTGCC
GCGGCGTCGTCTATGGGTGCGGATATCTCAGATGTTGATCTCGTGAACAT
AGATATGTTTGCGTCAAGAGTTGTTCAACTGGCAGAATATCGGGTAAGCC
TACACAACTACTTGAGATCTAAAATGTCAGTCGTCGCCCCTAATCTTGCT
GCGCTTATTGGTGAACAAGTAGGGGCGCGGTTAATTTCACACGCCGGTTC
TCTCACTTCGCTAGCTAAATACCCCGCATCCACGGTACAAATTCTCGGTG
CAGAAAAGGCTCTCTTCCGAGCGCTGAAGACAAAAGGAAAGACTCCAAAA
TATGGTTTGTTGTATCACTCAACATACATCGGGAAAGCCAAGCAGAAGAA
CAAAGGCCGGATATCAAGGTATCTTGCGAATAAATGCTCAATCGCTTCTC
GTATGGACTGCTTTTCGGAAGTTACAACTGATATATTTGGCCGAAAGCTG
CGTGAACAAGTCGAGGACAGACTTCGTTTTTACGAGAGCGGCAAGGCGCC
ACGAAAGAACATTGATGTGATGCACGAAGCTGTCAAAGAGTTAGAAGAGG
AGCAACCCCCTTCAAACGATGTGGATATGAAGGATGAAGGCGAAGACAAG
GATAAACGCCAAGAACAGGAAGGGGATGGTGATGTAGAAATGAAGACACC
AGAGGATCTGCCCAAAAAGAAAAAGAAGAAAGACAAGTCTTCATCGAAGA
AGGACAAATCTTCGTCAAAGAAAGAGAAATCAAGCAAGGACAAGAAACGC
AGAAGAGAATCTTCGTCGAGCAAAGAGAAGAAAGCCAAGAAGAAATCAAG
TTCGTAA

protein sequence of Gcaud1934.t1

>Gcaud1934.t1 ID=Gcaud1934.t1|Name=Gcaud1934.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=519bp
MVLYLLFESALGYSLFEVIENDVIASQVDSMQAAIAEYGRFAKMVKLKAF
APFTTAEHALENVNLISEGGVSDFLKNFLETNLPLSKSKHAQLGVHRDPK
LKSSVSDALNSKITVVSDEQCDELLRGIRMHLNRFIDGLKATDAVKAQLG
LAHSYSRSKVKFNVHKADNMIIQSIALLDQLDKDINTFAMRIREWYSWHF
PELIKVVPDNIQYARVVGIVRDKSTLSEDSVPELDKVLMNEDQARSVVSA
AASSMGADISDVDLVNIDMFASRVVQLAEYRVSLHNYLRSKMSVVAPNLA
ALIGEQVGARLISHAGSLTSLAKYPASTVQILGAEKALFRALKTKGKTPK
YGLLYHSTYIGKAKQKNKGRISRYLANKCSIASRMDCFSEVTTDIFGRKL
REQVEDRLRFYESGKAPRKNIDVMHEAVKELEEEQPPSNDVDMKDEGEDK
DKRQEQEGDGDVEMKTPEDLPKKKKKKDKSSSKKDKSSSKKEKSSKDKKR
RRESSSSKEKKAKKKSSS*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:33011..34567+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1934.t1 ID=Gcaud1934.t1|Name=Gcaud1934.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:33011..34567+ (Gracilaria caudata M_176_S67 male)
ATGGTTCTCTATCTTCTTTTCGAGTCAGCGTTGGGCTACTCCCTATTCGA
AGTTATTGAAAACGATGTCATCGCATCTCAGGTTGACAGTATGCAGGCCG
CCATCGCTGAGTACGGTCGGTTTGCGAAGATGGTAAAGCTCAAGGCCTTT
GCTCCATTTACCACAGCAGAGCATGCGTTAGAGAATGTCAATCTCATTTC
TGAAGGCGGTGTCTCAGATTTTCTCAAGAACTTCTTAGAAACAAACTTAC
CCTTATCCAAATCCAAGCATGCGCAATTGGGAGTTCATCGTGATCCCAAA
TTGAAGAGCTCCGTATCCGATGCACTCAACTCTAAGATCACCGTCGTTTC
GGATGAGCAATGCGATGAATTGCTTCGTGGTATTCGAATGCATCTCAACC
GCTTTATTGATGGTCTCAAGGCCACGGATGCAGTCAAGGCTCAGTTGGGT
CTTGCACACTCTTATTCGAGATCAAAAGTTAAGTTCAATGTGCACAAGGC
TGATAACATGATCATCCAATCTATTGCGTTGCTTGACCAGCTTGACAAGG
ACATTAACACGTTTGCGATGCGTATTCGAGAATGGTATTCATGGCATTTT
CCGGAACTCATCAAAGTGGTACCAGACAATATTCAATATGCCCGAGTGGT
TGGTATCGTACGTGACAAATCTACGCTTTCCGAAGATTCCGTTCCTGAAC
TAGACAAAGTGCTCATGAATGAAGATCAAGCCAGATCTGTTGTAAGTGCC
GCGGCGTCGTCTATGGGTGCGGATATCTCAGATGTTGATCTCGTGAACAT
AGATATGTTTGCGTCAAGAGTTGTTCAACTGGCAGAATATCGGGTAAGCC
TACACAACTACTTGAGATCTAAAATGTCAGTCGTCGCCCCTAATCTTGCT
GCGCTTATTGGTGAACAAGTAGGGGCGCGGTTAATTTCACACGCCGGTTC
TCTCACTTCGCTAGCTAAATACCCCGCATCCACGGTACAAATTCTCGGTG
CAGAAAAGGCTCTCTTCCGAGCGCTGAAGACAAAAGGAAAGACTCCAAAA
TATGGTTTGTTGTATCACTCAACATACATCGGGAAAGCCAAGCAGAAGAA
CAAAGGCCGGATATCAAGGTATCTTGCGAATAAATGCTCAATCGCTTCTC
GTATGGACTGCTTTTCGGAAGTTACAACTGATATATTTGGCCGAAAGCTG
CGTGAACAAGTCGAGGACAGACTTCGTTTTTACGAGAGCGGCAAGGCGCC
ACGAAAGAACATTGATGTGATGCACGAAGCTGTCAAAGAGTTAGAAGAGG
AGCAACCCCCTTCAAACGATGTGGATATGAAGGATGAAGGCGAAGACAAG
GATAAACGCCAAGAACAGGAAGGGGATGGTGATGTAGAAATGAAGACACC
AGAGGATCTGCCCAAAAAGAAAAAGAAGAAAGACAAGTCTTCATCGAAGA
AGGACAAATCTTCGTCAAAGAAAGAGAAATCAAGCAAGGACAAGAAACGC
AGAAGAGAATCTTCGTCGAGCAAAGAGAAGAAAGCCAAGAAGAAATCAAG
TTCGTAA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:33011..34567+

>Gcaud1934.t1 ID=Gcaud1934.t1|Name=Gcaud1934.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1557bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:33011..34567+ (Gracilaria caudata M_176_S67 male)
ATGGTTCTCTATCTTCTTTTCGAGTCAGCGTTGGGCTACTCCCTATTCGA
AGTTATTGAAAACGATGTCATCGCATCTCAGGTTGACAGTATGCAGGCCG
CCATCGCTGAGTACGGTCGGTTTGCGAAGATGGTAAAGCTCAAGGCCTTT
GCTCCATTTACCACAGCAGAGCATGCGTTAGAGAATGTCAATCTCATTTC
TGAAGGCGGTGTCTCAGATTTTCTCAAGAACTTCTTAGAAACAAACTTAC
CCTTATCCAAATCCAAGCATGCGCAATTGGGAGTTCATCGTGATCCCAAA
TTGAAGAGCTCCGTATCCGATGCACTCAACTCTAAGATCACCGTCGTTTC
GGATGAGCAATGCGATGAATTGCTTCGTGGTATTCGAATGCATCTCAACC
GCTTTATTGATGGTCTCAAGGCCACGGATGCAGTCAAGGCTCAGTTGGGT
CTTGCACACTCTTATTCGAGATCAAAAGTTAAGTTCAATGTGCACAAGGC
TGATAACATGATCATCCAATCTATTGCGTTGCTTGACCAGCTTGACAAGG
ACATTAACACGTTTGCGATGCGTATTCGAGAATGGTATTCATGGCATTTT
CCGGAACTCATCAAAGTGGTACCAGACAATATTCAATATGCCCGAGTGGT
TGGTATCGTACGTGACAAATCTACGCTTTCCGAAGATTCCGTTCCTGAAC
TAGACAAAGTGCTCATGAATGAAGATCAAGCCAGATCTGTTGTAAGTGCC
GCGGCGTCGTCTATGGGTGCGGATATCTCAGATGTTGATCTCGTGAACAT
AGATATGTTTGCGTCAAGAGTTGTTCAACTGGCAGAATATCGGGTAAGCC
TACACAACTACTTGAGATCTAAAATGTCAGTCGTCGCCCCTAATCTTGCT
GCGCTTATTGGTGAACAAGTAGGGGCGCGGTTAATTTCACACGCCGGTTC
TCTCACTTCGCTAGCTAAATACCCCGCATCCACGGTACAAATTCTCGGTG
CAGAAAAGGCTCTCTTCCGAGCGCTGAAGACAAAAGGAAAGACTCCAAAA
TATGGTTTGTTGTATCACTCAACATACATCGGGAAAGCCAAGCAGAAGAA
CAAAGGCCGGATATCAAGGTATCTTGCGAATAAATGCTCAATCGCTTCTC
GTATGGACTGCTTTTCGGAAGTTACAACTGATATATTTGGCCGAAAGCTG
CGTGAACAAGTCGAGGACAGACTTCGTTTTTACGAGAGCGGCAAGGCGCC
ACGAAAGAACATTGATGTGATGCACGAAGCTGTCAAAGAGTTAGAAGAGG
AGCAACCCCCTTCAAACGATGTGGATATGAAGGATGAAGGCGAAGACAAG
GATAAACGCCAAGAACAGGAAGGGGATGGTGATGTAGAAATGAAGACACC
AGAGGATCTGCCCAAAAAGAAAAAGAAGAAAGACAAGTCTTCATCGAAGA
AGGACAAATCTTCGTCAAAGAAAGAGAAATCAAGCAAGGACAAGAAACGC
AGAAGAGAATCTTCGTCGAGCAAAGAGAAGAAAGCCAAGAAGAAATCAAG
TTCGTAA