Gcaud1851.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1851.t1
Unique Name	Gcaud1851.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_207_length_37223_cov_4.468356	contig	NODE_207_length_37223_cov_4.468356:32723..33772 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	37919.EP51_05925
Preferred name	echA
PFAMs	ECH_2
Max annot lvl	201174\|Actinobacteria
KEGG rclass	RC00831,RC00834,RC01086,RC01095,RC01098,RC01103,RC01217,RC02115
KEGG ko	ko:K01692
KEGG Reaction	R03026,R03045,R04137,R04170,R04204,R04224,R04738,R04740,R04744,R04746,R04749,R05595,R06411,R06412,R06942,R08093
KEGG Pathway	ko00071,ko00280,ko00281,ko00310,ko00360,ko00362,ko00380,ko00410,ko00627,ko00640,ko00650,ko00903,ko00930,ko01100,ko01110,ko01120,ko01130,ko01212,map00071,map00280,map00281,map00310,map00360,map00362,map00380,map00410,map00627,map00640,map00650,map00903,map00930,map01100,map01110,map01120,map01130,map01212
KEGG Module	M00032,M00087
Evalue	5.11e-41
EggNOG OGs	COG1024@1\|root,COG1024@2\|Bacteria,2GMET@201174\|Actinobacteria,4FY9M@85025\|Nocardiaceae
EC	4.2.1.17
Description	Enoyl-CoA hydratase/isomerase
COG category	I
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1851	Gcaud1851	Gracilaria caudata M_176_S67 male	gene	NODE_207_length_37223_cov_4.468356 32723..33772 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1851.t1.stop1	Gcaud1851.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_207_length_37223_cov_4.468356 32723..32725 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1851.t1.CDS1	Gcaud1851.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_207_length_37223_cov_4.468356 32723..33772 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1851.t1.exon1	Gcaud1851.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_207_length_37223_cov_4.468356 32723..33772 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1851.t1.start1	Gcaud1851.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_207_length_37223_cov_4.468356 33770..33772 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1851.t1	Gcaud1851.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_207_length_37223_cov_4.468356 32723..33772 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_207_length_37223_cov_4.468356:32723..33772-
coding sequence from alignment at NODE_207_length_37223_cov_4.468356:32723..33772-

mRNA sequence

>Gcaud1851.t1 ID=Gcaud1851.t1|Name=Gcaud1851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=350bp
MKLDPNLLSKGGLTYVLRTIASGEKIHHITLVREKSLNALQPETFVALNA
VVDCIKSPSYVLLTGSGRAFSAGGDVRMLREKVISAGPVQSQERRTAAWE
TLNREYRFMERMASLHESGIVTIALADGYAFGAGQGLFQSCSVRLVTRKA
LFSMPEVAIGLVPDCGATHFYVNMPGCVGMYASLTGARIGAADAVALGLA
HGVIDANWTGADLVGVSREAVLNNTRELLDESTELSNPESEIRRAIDEVF
SHDSVKEITRQLETKEDEWARKALAAIQKGSPRALHECFRIMKEGYKGGN
LVEALERELIVETDLAARRDFVDGVRALLVDKTGNPEWEAFDPVQGSIG*

spliced messenger RNA

>Gcaud1851.t1 ID=Gcaud1851.t1|Name=Gcaud1851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:32723..33772- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTAGATCCCAACTTGCTTAGTAAGGGTGGTCTTACCTATGTCCT
CCGCACGATCGCAAGTGGGGAGAAGATTCATCACATAACTCTTGTTCGGG
AGAAGTCGCTCAATGCTTTGCAACCGGAAACTTTCGTTGCTCTAAATGCT
GTTGTGGATTGTATTAAATCCCCAAGCTATGTCCTTCTAACTGGATCTGG
TCGTGCGTTCTCTGCCGGTGGCGATGTGCGAATGCTTCGCGAAAAAGTGA
TCAGTGCCGGTCCTGTTCAATCACAGGAGCGACGGACCGCTGCATGGGAA
ACTTTGAACAGAGAATATCGCTTCATGGAGCGAATGGCGTCTCTACATGA
ATCAGGCATTGTCACGATCGCTCTAGCTGACGGATATGCTTTTGGCGCTG
GACAAGGACTCTTCCAATCCTGTTCAGTGCGGTTAGTGACGAGAAAAGCC
TTGTTCTCAATGCCGGAGGTGGCGATCGGGCTTGTGCCAGATTGCGGTGC
GACTCACTTTTACGTGAACATGCCAGGATGCGTCGGAATGTATGCCTCTC
TTACGGGGGCCCGTATTGGAGCAGCAGATGCCGTCGCTCTCGGTTTGGCA
CATGGTGTGATTGATGCCAATTGGACAGGCGCTGATCTTGTCGGCGTTAG
CAGGGAAGCTGTGTTAAACAATACACGTGAGCTCTTGGACGAGAGTACTG
AGCTTTCAAATCCGGAATCGGAAATACGGCGGGCGATTGACGAAGTGTTC
TCTCATGACAGTGTGAAAGAAATTACCCGGCAATTAGAGACGAAAGAGGA
CGAATGGGCCAGAAAAGCACTTGCTGCTATTCAGAAAGGTTCACCGCGCG
CTTTGCACGAATGCTTTCGGATTATGAAAGAAGGATATAAAGGAGGAAAT
TTGGTAGAAGCTCTTGAACGAGAACTAATTGTAGAAACAGACCTAGCAGC
GCGGAGAGATTTCGTTGATGGTGTCCGTGCGTTGCTTGTCGACAAAACAG
GAAACCCGGAGTGGGAAGCGTTTGATCCCGTCCAAGGCTCTATTGGATGA

protein sequence of Gcaud1851.t1

>Gcaud1851.t1 ID=Gcaud1851.t1|Name=Gcaud1851.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=350bp
MKLDPNLLSKGGLTYVLRTIASGEKIHHITLVREKSLNALQPETFVALNA
VVDCIKSPSYVLLTGSGRAFSAGGDVRMLREKVISAGPVQSQERRTAAWE
TLNREYRFMERMASLHESGIVTIALADGYAFGAGQGLFQSCSVRLVTRKA
LFSMPEVAIGLVPDCGATHFYVNMPGCVGMYASLTGARIGAADAVALGLA
HGVIDANWTGADLVGVSREAVLNNTRELLDESTELSNPESEIRRAIDEVF
SHDSVKEITRQLETKEDEWARKALAAIQKGSPRALHECFRIMKEGYKGGN
LVEALERELIVETDLAARRDFVDGVRALLVDKTGNPEWEAFDPVQGSIG*

mRNA from alignment at NODE_207_length_37223_cov_4.468356:32723..33772-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1851.t1 ID=Gcaud1851.t1|Name=Gcaud1851.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:32723..33772- (Gracilaria caudata M_176_S67 male)
ATGAAGTTAGATCCCAACTTGCTTAGTAAGGGTGGTCTTACCTATGTCCT
CCGCACGATCGCAAGTGGGGAGAAGATTCATCACATAACTCTTGTTCGGG
AGAAGTCGCTCAATGCTTTGCAACCGGAAACTTTCGTTGCTCTAAATGCT
GTTGTGGATTGTATTAAATCCCCAAGCTATGTCCTTCTAACTGGATCTGG
TCGTGCGTTCTCTGCCGGTGGCGATGTGCGAATGCTTCGCGAAAAAGTGA
TCAGTGCCGGTCCTGTTCAATCACAGGAGCGACGGACCGCTGCATGGGAA
ACTTTGAACAGAGAATATCGCTTCATGGAGCGAATGGCGTCTCTACATGA
ATCAGGCATTGTCACGATCGCTCTAGCTGACGGATATGCTTTTGGCGCTG
GACAAGGACTCTTCCAATCCTGTTCAGTGCGGTTAGTGACGAGAAAAGCC
TTGTTCTCAATGCCGGAGGTGGCGATCGGGCTTGTGCCAGATTGCGGTGC
GACTCACTTTTACGTGAACATGCCAGGATGCGTCGGAATGTATGCCTCTC
TTACGGGGGCCCGTATTGGAGCAGCAGATGCCGTCGCTCTCGGTTTGGCA
CATGGTGTGATTGATGCCAATTGGACAGGCGCTGATCTTGTCGGCGTTAG
CAGGGAAGCTGTGTTAAACAATACACGTGAGCTCTTGGACGAGAGTACTG
AGCTTTCAAATCCGGAATCGGAAATACGGCGGGCGATTGACGAAGTGTTC
TCTCATGACAGTGTGAAAGAAATTACCCGGCAATTAGAGACGAAAGAGGA
CGAATGGGCCAGAAAAGCACTTGCTGCTATTCAGAAAGGTTCACCGCGCG
CTTTGCACGAATGCTTTCGGATTATGAAAGAAGGATATAAAGGAGGAAAT
TTGGTAGAAGCTCTTGAACGAGAACTAATTGTAGAAACAGACCTAGCAGC
GCGGAGAGATTTCGTTGATGGTGTCCGTGCGTTGCTTGTCGACAAAACAG
GAAACCCGGAGTGGGAAGCGTTTGATCCCGTCCAAGGCTCTATTGGATGA

Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:32723..33772-

>Gcaud1851.t1 ID=Gcaud1851.t1|Name=Gcaud1851.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1050bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:32723..33772- (Gracilaria caudata M_176_S67 male)
ATGAAGTTAGATCCCAACTTGCTTAGTAAGGGTGGTCTTACCTATGTCCT
CCGCACGATCGCAAGTGGGGAGAAGATTCATCACATAACTCTTGTTCGGG
AGAAGTCGCTCAATGCTTTGCAACCGGAAACTTTCGTTGCTCTAAATGCT
GTTGTGGATTGTATTAAATCCCCAAGCTATGTCCTTCTAACTGGATCTGG
TCGTGCGTTCTCTGCCGGTGGCGATGTGCGAATGCTTCGCGAAAAAGTGA
TCAGTGCCGGTCCTGTTCAATCACAGGAGCGACGGACCGCTGCATGGGAA
ACTTTGAACAGAGAATATCGCTTCATGGAGCGAATGGCGTCTCTACATGA
ATCAGGCATTGTCACGATCGCTCTAGCTGACGGATATGCTTTTGGCGCTG
GACAAGGACTCTTCCAATCCTGTTCAGTGCGGTTAGTGACGAGAAAAGCC
TTGTTCTCAATGCCGGAGGTGGCGATCGGGCTTGTGCCAGATTGCGGTGC
GACTCACTTTTACGTGAACATGCCAGGATGCGTCGGAATGTATGCCTCTC
TTACGGGGGCCCGTATTGGAGCAGCAGATGCCGTCGCTCTCGGTTTGGCA
CATGGTGTGATTGATGCCAATTGGACAGGCGCTGATCTTGTCGGCGTTAG
CAGGGAAGCTGTGTTAAACAATACACGTGAGCTCTTGGACGAGAGTACTG
AGCTTTCAAATCCGGAATCGGAAATACGGCGGGCGATTGACGAAGTGTTC
TCTCATGACAGTGTGAAAGAAATTACCCGGCAATTAGAGACGAAAGAGGA
CGAATGGGCCAGAAAAGCACTTGCTGCTATTCAGAAAGGTTCACCGCGCG
CTTTGCACGAATGCTTTCGGATTATGAAAGAAGGATATAAAGGAGGAAAT
TTGGTAGAAGCTCTTGAACGAGAACTAATTGTAGAAACAGACCTAGCAGC
GCGGAGAGATTTCGTTGATGGTGTCCGTGCGTTGCTTGTCGACAAAACAG
GAAACCCGGAGTGGGAAGCGTTTGATCCCGTCCAAGGCTCTATTGGATGA