Gcaud1936.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1936.t1
Unique NameGcaud1936.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length212
Homology
BLAST of Gcaud1936.t1 vs. uniprot
Match: A0A2V3IPW0_9FLOR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8-A, mitochondrial n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPW0_9FLOR)

HSP 1 Score: 319 bits (818), Expect = 9.670e-109
Identity = 191/206 (92.72%), Postives = 201/206 (97.57%), Query Frame = 0
Query:    6 SVVRSARILQPGVRSIFSITPRLNEGEKKPTEPSTAETPLQTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            ++ RSAR+L+P  R+IFS+TPRLNEGE+KPT PST+ETPL++N QHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR
Sbjct:    6 TIARSARLLRPQARTIFSVTPRLNEGEQKPTTPSTSETPLKSNPQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211          
BLAST of Gcaud1936.t1 vs. uniprot
Match: R7Q9V7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9V7_CHOCR)

HSP 1 Score: 271 bits (692), Expect = 1.780e-89
Identity = 169/200 (84.50%), Postives = 180/200 (90.00%), Query Frame = 0
Query:   12 RILQPGVRSIFSITPRLNEGEKKPTEPSTAETPLQTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            R L    R+ FS TP  NEG++  T+PST +TP+ T+T  LV +T+EALF+TEM RG+AL LQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRY SGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNI NESMYR
Sbjct:   18 RALPHLARTFFSATPPRNEGDRPLTQPSTPQTPMATDTASLVRKTSEALFMTEMMRGMALALQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYASGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIENESMYR 217          
BLAST of Gcaud1936.t1 vs. uniprot
Match: A0A5J4YML1_PORPP (NADH dehydrogenase ubiquinone iron-sulfur protein 8-A, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YML1_PORPP)

HSP 1 Score: 233 bits (595), Expect = 1.230e-74
Identity = 145/171 (84.80%), Postives = 159/171 (92.98%), Query Frame = 0
Query:   41 AETPLQTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            A  P+  + Q +  +TA+ALFLTE+ RG+ LTLQYFFQPKVTL+YP+EKGP+SPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPN+EYATETHEELLYNKEKLLANGDRWESEIAKNI +ES YR
Sbjct:   54 ARGPMDDSVQSIAEKTAQALFLTEIVRGMGLTLQYFFQPKVTLDYPLEKGPISPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLANGDRWESEIAKNIQSESQYR 224          
BLAST of Gcaud1936.t1 vs. uniprot
Match: A0A1X6NQ17_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQ17_PORUM)

HSP 1 Score: 232 bits (592), Expect = 7.140e-74
Identity = 148/172 (86.05%), Postives = 161/172 (93.60%), Query Frame = 0
Query:   40 TAETPLQTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            TAET + T+ Q LV++TAEAL+LTEM RG+ALTLQYFFQPKVTL+YPMEKGP SPRFRGEHALRRY SGEERCIACKLCEA+CPAQAITIEAEPRP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPN EYATETHEELLYNK KLLANGDRWE+EIA+N+ +ES+YR
Sbjct:   75 TAETIMPTDNQALVSKTAEALYLTEMMRGMALTLQYFFQPKVTLDYPMEKGPSSPRFRGEHALRRYESGEERCIACKLCEAICPAQAITIEAEPRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNMEYATETHEELLYNKAKLLANGDRWETEIAQNLKSESLYR 246          
BLAST of Gcaud1936.t1 vs. uniprot
Match: M2XEI5_GALSU (NADH dehydrogenase (Ubiquinone) Fe-S protein 8 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XEI5_GALSU)

HSP 1 Score: 226 bits (575), Expect = 2.090e-71
Identity = 152/206 (73.79%), Postives = 165/206 (80.10%), Query Frame = 0
Query:   18 VRSIFS---ITPRLNEGEK---------KPTEPSTAETPLQTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            + +IFS    +  LNEG+          K T+P    +      + LV  TA  LF TEM RGL +TLQYFFQP VTLNYP EKGPLSPRFRGEHALRRYPSGEERCIACKLCEA+CPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPN+EYATETHEELLYNKEKLL NGDRWE+EIAKN+  E+MYR
Sbjct:   33 ISAIFSRNFFSKPLNEGQSPSSSSSESVKKTQPQGTSSERVPTWKELVDATATTLFATEMVRGLMMTLQYFFQPAVTLNYPSEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYNKEKLLRNGDRWETEIAKNLEAEAMYR 238          
BLAST of Gcaud1936.t1 vs. uniprot
Match: A0A7N2MZB9_QUELO (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MZB9_QUELO)

HSP 1 Score: 214 bits (545), Expect = 4.570e-67
Identity = 145/214 (67.76%), Postives = 164/214 (76.64%), Query Frame = 0
Query:    2 LTVRSVVRSARILQP----GVRSIFSITPRLNEGEKKPTEPSTAETPLQTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            L  R +  SA+ LQ     G+R  F+  P   + + +  E  T E     NT  +  R+   LFLTEM RGL LTL+YFF+PKVT+NYP EKGPLSPRFRGEHALRRYP+GEERCIACKLCEAVCPAQAITIEAE R D      XXXXXXXXXXXXXXXXXXXXXXXIVEGPN+EYATETHEELLY+KEKLL NGDRWESEIA+N+ +ES+YR
Sbjct:   14 LRARQLAVSAQALQGSNHYGLR--FNAHPFSTKNDDEEYEKLTKEISKDWNT--VFERSINTLFLTEMVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATETHEELLYDKEKLLENGDRWESEIAENLRSESLYR 223          
BLAST of Gcaud1936.t1 vs. uniprot
Match: T2MIX5_HYDVU (NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2MIX5_HYDVU)

HSP 1 Score: 214 bits (544), Expect = 5.010e-67
Identity = 147/215 (68.37%), Postives = 169/215 (78.60%), Query Frame = 0
Query:    1 MLTVRSVVRSARILQ--PGVRSIFSITPRLNEGEKKPTEPSTAETPLQTNTQ--HLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            M+ + S++RS+ +L+  P VR+I      LN           A  P +T+ +  H+  R A  LFLT++ RGLA+TL Y F+   T+NYP EKGPLSPRFRGEHALRRYPSGEERCIACKLCEA+CPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPN+EY+TETHEELLYNKEKLL NGDRWE EIAKNI  + +YR
Sbjct:    1 MMNLSSLLRSSLLLKAKPFVRTIAQAGQPLNHQSGASPYKYVALLPEETSNEFHHINNRNATILFLTDLLRGLAMTLSYVFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYSTETHEELLYNKEKLLENGDRWEVEIAKNIQADYLYR 215          
BLAST of Gcaud1936.t1 vs. uniprot
Match: C1FHK3_MICCC (NADH dehydrogenase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FHK3_MICCC)

HSP 1 Score: 214 bits (545), Expect = 5.360e-67
Identity = 128/171 (74.85%), Postives = 150/171 (87.72%), Query Frame = 0
Query:   41 AETPLQTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            + TP+ T+   ++  +A+ LFLTEMFRG++L ++YF++PKVT+NYP EKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R D      XXXXXXXXXXXXXXXXXXXXXXXIVEGPN+EYAT THEELLY+KEKLLANGD+WE EI KN+A+ES+YR
Sbjct:   58 SSTPMPTDLNGVLDASAQTLFLTEMFRGMSLAMKYFWEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEYATYTHEELLYDKEKLLANGDKWELEIQKNLASESLYR 228          
BLAST of Gcaud1936.t1 vs. uniprot
Match: B9RBF2_RICCO (NADH-ubiquinone oxidoreductase 1, chain, putative n=19 Tax=Mesangiospermae TaxID=1437183 RepID=B9RBF2_RICCO)

HSP 1 Score: 211 bits (538), Expect = 5.090e-66
Identity = 135/210 (64.29%), Postives = 159/210 (75.71%), Query Frame = 0
Query:    2 LTVRSVVRSARILQPGVRSIFSITPRLNEGEKKPTEPSTAETPLQTNTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            LT R +  S ++LQ   +     +  L    K+  E       +  +   +  R+   LFLTEM RGL+LTL+YFF+ KVT+NYP EKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R D      XXXXXXXXXXXXXXXXXXXXXXXIVEGPN+E+ATETHEELLY+KEKLL NGDRWE+EIA+N+ +ES+YR
Sbjct:   13 LTARQLAVSGQLLQGSNQYALRSSAHLYSTRKEDEEREQLSREMSKDWSSIFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222          
BLAST of Gcaud1936.t1 vs. uniprot
Match: A0A7J0F8T5_9ERIC (Alpha-helical ferredoxin n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0F8T5_9ERIC)

HSP 1 Score: 211 bits (537), Expect = 5.960e-66
Identity = 128/164 (78.05%), Postives = 144/164 (87.80%), Query Frame = 0
Query:   48 NTQHLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVEGPNYEYATETHEELLYNKEKLLANGDRWESEIAKNIANESMYR 211
            +T  +  R+   LFLTEM RGL+LTL+YFF PKVT+NYP EKGPLSPRFRGEHALRRYP+GEERCIACKLCEA+CPAQAITIEAE R D      XXXXXXXXXXXXXXXXXXXXXXXIVEGPN+E+ATETHEELLY+KEKLL NGDRWE+EIA+N+ +ES+YR
Sbjct:   53 STDKVFERSINTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTXXXXXXXXXXXXXXXXXXXXXXXIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 216          
The following BLAST results are available for this feature:
BLAST of Gcaud1936.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPW0_9FLOR9.670e-10992.72NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
R7Q9V7_CHOCR1.780e-8984.50Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A5J4YML1_PORPP1.230e-7484.80NADH dehydrogenase ubiquinone iron-sulfur protein ... [more]
A0A1X6NQ17_PORUM7.140e-7486.05Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
M2XEI5_GALSU2.090e-7173.79NADH dehydrogenase (Ubiquinone) Fe-S protein 8 n=1... [more]
A0A7N2MZB9_QUELO4.570e-6767.76Uncharacterized protein n=3 Tax=Fagaceae TaxID=350... [more]
T2MIX5_HYDVU5.010e-6768.37NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
C1FHK3_MICCC5.360e-6774.85NADH dehydrogenase n=1 Tax=Micromonas commoda (str... [more]
B9RBF2_RICCO5.090e-6664.29NADH-ubiquinone oxidoreductase 1, chain, putative ... [more]
A0A7J0F8T5_9ERIC5.960e-6678.05Alpha-helical ferredoxin n=1 Tax=Actinidia rufa Ta... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010226NADH-quinone oxidoreductase, chain ITIGRFAMTIGR01971TIGR01971coord: 68..189
e-value: 7.6E-51
score: 168.8
IPR010226NADH-quinone oxidoreductase, chain IPANTHERPTHR10849NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIALcoord: 50..211
IPR010226NADH-quinone oxidoreductase, chain IHAMAPMF_01351NDH1_NuoIcoord: 59..195
score: 28.834686
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPFAMPF12838Fer4_7coord: 111..165
e-value: 1.2E-13
score: 51.4
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 103..132
score: 10.020185
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainPROSITEPS513794FE4S_FER_2coord: 142..171
score: 10.952673
NoneNo IPR availableGENE3D3.30.70.3270coord: 85..210
e-value: 2.2E-45
score: 156.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..48
NoneNo IPR availablePANTHERPTHR10849:SF30SUBFAMILY NOT NAMEDcoord: 50..211
NoneNo IPR availableSUPERFAMILY548624Fe-4S ferredoxinscoord: 85..195
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved sitePROSITEPS001984FE4S_FER_1coord: 151..162

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:38156..38930 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1936.t1Gcaud1936.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 38156..38930 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1936.t1 ID=Gcaud1936.t1|Name=Gcaud1936.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=212bp
MLTVRSVVRSARILQPGVRSIFSITPRLNEGEKKPTEPSTAETPLQTNTQ
HLVTRTAEALFLTEMFRGLALTLQYFFQPKVTLNYPMEKGPLSPRFRGEH
ALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRPDGSRRTTRYDIDMTK
CIFCGACQEACPVDAIVEGPNYEYATETHEELLYNKEKLLANGDRWESEI
AKNIANESMYR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010226NADH_quinone_OxRdtase_chainI
IPR0178964Fe4S_Fe-S-bd
IPR0179004Fe4S_Fe_S_CS