Gcaud1847.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1847.t1
Unique Name	Gcaud1847.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	367

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_207_length_37223_cov_4.468356	contig	NODE_207_length_37223_cov_4.468356:23237..24337 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13333.ERN18153
Preferred name	OGG1
PFAMs	HhH-GPD,OGG_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03660
KEGG Pathway	ko03410,map03410
GOs	GO:0000702,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006282,GO:0006284,GO:0006285,GO:0006289,GO:0006304,GO:0006355,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0008150,GO:0008152,GO:0008534,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009628,GO:0009889,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010605,GO:0016363,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0031323,GO:0031324,GO:0031326,GO:0031974,GO:0031981,GO:0032356,GO:0032357,GO:0032991,GO:0033554,GO:0033683,GO:0034399,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045007,GO:0045008,GO:0045738,GO:0045934,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051252,GO:0051716,GO:0055086,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901135,GO:1901136,GO:1901291,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1903506,GO:2000112,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001141
Evalue	2.07e-60
EggNOG OGs	COG0122@1\|root,KOG2875@2759\|Eukaryota,37JD3@33090\|Viridiplantae,3GE5X@35493\|Streptophyta
EC	4.2.99.18
Description	N-glycosylase DNA lyase
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1847	Gcaud1847	Gracilaria caudata M_176_S67 male	gene	NODE_207_length_37223_cov_4.468356 23237..24337 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1847.t1.start1	Gcaud1847.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_207_length_37223_cov_4.468356 23237..23239 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1847.t1.CDS1	Gcaud1847.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_207_length_37223_cov_4.468356 23237..24337 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1847.t1.exon1	Gcaud1847.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_207_length_37223_cov_4.468356 23237..24337 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1847.t1.stop1	Gcaud1847.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_207_length_37223_cov_4.468356 24335..24337 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1847.t1	Gcaud1847.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_207_length_37223_cov_4.468356 23237..24337 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_207_length_37223_cov_4.468356:23237..24337+
coding sequence from alignment at NODE_207_length_37223_cov_4.468356:23237..24337+

mRNA sequence

>Gcaud1847.t1 ID=Gcaud1847.t1|Name=Gcaud1847.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=367bp
MWREMGIFPFPPSHTGVVREWAGPIGDRLFILRQSHPQPPESVEDPVWYR
IHSECGHADSDTSYQLLTNYFRADVDHTKLMKSFCEADNVFNSIFPYYKG
LRTIRVHPEECLFAFICSSNNNIKRITTLVTHLATSYGKKLASHGNYTFH
AFPSAETLAAEANEQDLREAGFGYRAKFIPATARELTKQAAAGHVSAEQL
LLSWRSLPRKEVSDKLVKFAGIGRKVAGCIALMSLEQHGEIPVDTHVWQI
SKRYMPDLEGKSLTNRVYDRIGEFFRNRFGEDVAGFAHNVLFIAELSDFK
NMVEKSGVKGAAKAEKSVLDVASLKKVKKVTTAKKNKSGENAERRLRSSR
GQNGVQKSSKRGGKGR*

spliced messenger RNA

>Gcaud1847.t1 ID=Gcaud1847.t1|Name=Gcaud1847.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:23237..24337+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAGAGAAATGGGAATATTTCCCTTCCCACCATCACACACTGGAGT
AGTTCGTGAATGGGCTGGTCCTATAGGGGATCGTCTTTTCATCCTTCGGC
AATCACACCCACAACCTCCAGAATCAGTTGAGGATCCGGTGTGGTACCGC
ATTCATTCAGAATGCGGACATGCTGATTCGGATACTTCGTATCAACTTCT
CACCAATTACTTTCGTGCGGATGTGGACCACACGAAACTTATGAAGTCAT
TCTGCGAAGCCGATAATGTGTTCAATAGTATCTTTCCATATTACAAAGGA
CTGCGGACTATTCGAGTGCACCCAGAGGAGTGTCTGTTTGCGTTCATTTG
CTCTTCAAACAATAACATCAAACGTATCACGACACTGGTAACACACTTAG
CGACATCATATGGTAAAAAGCTTGCCAGTCATGGAAACTACACTTTTCAC
GCGTTCCCAAGTGCAGAGACTCTCGCGGCCGAAGCAAACGAACAGGATCT
TCGGGAAGCAGGGTTTGGCTACCGCGCCAAGTTCATCCCTGCAACAGCGC
GCGAGCTAACAAAACAGGCTGCCGCGGGGCATGTGTCCGCAGAGCAGTTG
CTGCTGTCATGGCGCTCACTGCCTCGGAAAGAAGTATCAGATAAACTTGT
GAAGTTCGCTGGGATAGGGCGCAAAGTTGCGGGGTGTATTGCGTTAATGT
CTTTGGAACAACATGGAGAGATCCCTGTGGACACACATGTTTGGCAGATA
TCGAAACGTTACATGCCGGATCTCGAGGGCAAGTCATTAACAAACAGAGT
GTATGATAGGATCGGAGAGTTCTTCAGGAATCGGTTCGGGGAGGATGTAG
CTGGTTTTGCACACAACGTGCTGTTTATTGCGGAGCTTTCTGACTTCAAG
AATATGGTGGAGAAGAGTGGCGTGAAGGGGGCAGCGAAAGCCGAAAAAAG
TGTACTGGATGTGGCTAGCTTGAAGAAAGTCAAGAAGGTCACGACGGCGA
AGAAGAACAAGAGCGGCGAAAACGCAGAAAGGAGACTGCGAAGCTCGCGT
GGACAGAACGGGGTACAAAAGAGTAGCAAGCGCGGGGGAAAGGGACGCTA
G

protein sequence of Gcaud1847.t1

>Gcaud1847.t1 ID=Gcaud1847.t1|Name=Gcaud1847.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=367bp
MWREMGIFPFPPSHTGVVREWAGPIGDRLFILRQSHPQPPESVEDPVWYR
IHSECGHADSDTSYQLLTNYFRADVDHTKLMKSFCEADNVFNSIFPYYKG
LRTIRVHPEECLFAFICSSNNNIKRITTLVTHLATSYGKKLASHGNYTFH
AFPSAETLAAEANEQDLREAGFGYRAKFIPATARELTKQAAAGHVSAEQL
LLSWRSLPRKEVSDKLVKFAGIGRKVAGCIALMSLEQHGEIPVDTHVWQI
SKRYMPDLEGKSLTNRVYDRIGEFFRNRFGEDVAGFAHNVLFIAELSDFK
NMVEKSGVKGAAKAEKSVLDVASLKKVKKVTTAKKNKSGENAERRLRSSR
GQNGVQKSSKRGGKGR*

mRNA from alignment at NODE_207_length_37223_cov_4.468356:23237..24337+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1847.t1 ID=Gcaud1847.t1|Name=Gcaud1847.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1101bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:23237..24337+ (Gracilaria caudata M_176_S67 male)
ATGTGGAGAGAAATGGGAATATTTCCCTTCCCACCATCACACACTGGAGT
AGTTCGTGAATGGGCTGGTCCTATAGGGGATCGTCTTTTCATCCTTCGGC
AATCACACCCACAACCTCCAGAATCAGTTGAGGATCCGGTGTGGTACCGC
ATTCATTCAGAATGCGGACATGCTGATTCGGATACTTCGTATCAACTTCT
CACCAATTACTTTCGTGCGGATGTGGACCACACGAAACTTATGAAGTCAT
TCTGCGAAGCCGATAATGTGTTCAATAGTATCTTTCCATATTACAAAGGA
CTGCGGACTATTCGAGTGCACCCAGAGGAGTGTCTGTTTGCGTTCATTTG
CTCTTCAAACAATAACATCAAACGTATCACGACACTGGTAACACACTTAG
CGACATCATATGGTAAAAAGCTTGCCAGTCATGGAAACTACACTTTTCAC
GCGTTCCCAAGTGCAGAGACTCTCGCGGCCGAAGCAAACGAACAGGATCT
TCGGGAAGCAGGGTTTGGCTACCGCGCCAAGTTCATCCCTGCAACAGCGC
GCGAGCTAACAAAACAGGCTGCCGCGGGGCATGTGTCCGCAGAGCAGTTG
CTGCTGTCATGGCGCTCACTGCCTCGGAAAGAAGTATCAGATAAACTTGT
GAAGTTCGCTGGGATAGGGCGCAAAGTTGCGGGGTGTATTGCGTTAATGT
CTTTGGAACAACATGGAGAGATCCCTGTGGACACACATGTTTGGCAGATA
TCGAAACGTTACATGCCGGATCTCGAGGGCAAGTCATTAACAAACAGAGT
GTATGATAGGATCGGAGAGTTCTTCAGGAATCGGTTCGGGGAGGATGTAG
CTGGTTTTGCACACAACGTGCTGTTTATTGCGGAGCTTTCTGACTTCAAG
AATATGGTGGAGAAGAGTGGCGTGAAGGGGGCAGCGAAAGCCGAAAAAAG
TGTACTGGATGTGGCTAGCTTGAAGAAAGTCAAGAAGGTCACGACGGCGA
AGAAGAACAAGAGCGGCGAAAACGCAGAAAGGAGACTGCGAAGCTCGCGT
GGACAGAACGGGGTACAAAAGAGTAGCAAGCGCGGGGGAAAGGGACGCTA
G

Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:23237..24337+

>Gcaud1847.t1 ID=Gcaud1847.t1|Name=Gcaud1847.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1101bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:23237..24337+ (Gracilaria caudata M_176_S67 male)
ATGTGGAGAGAAATGGGAATATTTCCCTTCCCACCATCACACACTGGAGT
AGTTCGTGAATGGGCTGGTCCTATAGGGGATCGTCTTTTCATCCTTCGGC
AATCACACCCACAACCTCCAGAATCAGTTGAGGATCCGGTGTGGTACCGC
ATTCATTCAGAATGCGGACATGCTGATTCGGATACTTCGTATCAACTTCT
CACCAATTACTTTCGTGCGGATGTGGACCACACGAAACTTATGAAGTCAT
TCTGCGAAGCCGATAATGTGTTCAATAGTATCTTTCCATATTACAAAGGA
CTGCGGACTATTCGAGTGCACCCAGAGGAGTGTCTGTTTGCGTTCATTTG
CTCTTCAAACAATAACATCAAACGTATCACGACACTGGTAACACACTTAG
CGACATCATATGGTAAAAAGCTTGCCAGTCATGGAAACTACACTTTTCAC
GCGTTCCCAAGTGCAGAGACTCTCGCGGCCGAAGCAAACGAACAGGATCT
TCGGGAAGCAGGGTTTGGCTACCGCGCCAAGTTCATCCCTGCAACAGCGC
GCGAGCTAACAAAACAGGCTGCCGCGGGGCATGTGTCCGCAGAGCAGTTG
CTGCTGTCATGGCGCTCACTGCCTCGGAAAGAAGTATCAGATAAACTTGT
GAAGTTCGCTGGGATAGGGCGCAAAGTTGCGGGGTGTATTGCGTTAATGT
CTTTGGAACAACATGGAGAGATCCCTGTGGACACACATGTTTGGCAGATA
TCGAAACGTTACATGCCGGATCTCGAGGGCAAGTCATTAACAAACAGAGT
GTATGATAGGATCGGAGAGTTCTTCAGGAATCGGTTCGGGGAGGATGTAG
CTGGTTTTGCACACAACGTGCTGTTTATTGCGGAGCTTTCTGACTTCAAG
AATATGGTGGAGAAGAGTGGCGTGAAGGGGGCAGCGAAAGCCGAAAAAAG
TGTACTGGATGTGGCTAGCTTGAAGAAAGTCAAGAAGGTCACGACGGCGA
AGAAGAACAAGAGCGGCGAAAACGCAGAAAGGAGACTGCGAAGCTCGCGT
GGACAGAACGGGGTACAAAAGAGTAGCAAGCGCGGGGGAAAGGGACGCTA
G