Gcaud1845.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1845.t1
Unique Name	Gcaud1845.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	266

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_207_length_37223_cov_4.468356	contig	NODE_207_length_37223_cov_4.468356:20746..21543 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	653948.CCA22702
PFAMs	TB2_DP1_HVA22
Max annot lvl	2759\|Eukaryota
Evalue	8.81e-27
EggNOG OGs	28M3K@1\|root,2QTKE@2759\|Eukaryota
Description	TB2/DP1, HVA22 family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1845	Gcaud1845	Gracilaria caudata M_176_S67 male	gene	NODE_207_length_37223_cov_4.468356 20746..21543 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1845.t1.start1	Gcaud1845.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_207_length_37223_cov_4.468356 20746..20748 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1845.t1.CDS1	Gcaud1845.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_207_length_37223_cov_4.468356 20746..21543 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1845.t1.exon1	Gcaud1845.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_207_length_37223_cov_4.468356 20746..21543 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1845.t1.stop1	Gcaud1845.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_207_length_37223_cov_4.468356 21541..21543 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1845.t1	Gcaud1845.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_207_length_37223_cov_4.468356 20746..21543 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_207_length_37223_cov_4.468356:20746..21543+
coding sequence from alignment at NODE_207_length_37223_cov_4.468356:20746..21543+

mRNA sequence

>Gcaud1845.t1 ID=Gcaud1845.t1|Name=Gcaud1845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=266bp
MSKSSDSLYPSSMSALLDMPENEKEHEALELATLRFWVVFALAWAARSLL
RYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRTRIR
RQDRNRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLIT
PRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNWLSYWSILYLIEI
AYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGAAIVLDRVMACLGATMS
SVQRQVITPRKKKRA*

spliced messenger RNA

>Gcaud1845.t1 ID=Gcaud1845.t1|Name=Gcaud1845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:20746..21543+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGTCTAGTGATTCTCTTTATCCTTCTTCCATGTCAGCGCTTTT
GGACATGCCTGAAAATGAGAAGGAGCATGAAGCGTTAGAACTTGCAACGT
TGCGTTTTTGGGTTGTTTTTGCTCTTGCCTGGGCAGCCCGTTCACTTCTG
AGATACTTCTGTCCCATCATGTTTGAAGGATTTCTTGTCGAATTTGATAA
CTTTCTCTTGTATTTCTTGCTATGGACAGAACTGGATATCACCAAGGGAG
CGGAAACAGTTTACTCGCTCATATCCGAGACCATGAGAACTAGAATACGA
AGGCAAGATCGAAATAGGTTGGAGAAGCTTAACGTCGTTTTGAGACTTCT
CGTGGCCACAGGTGTCTTGAATGAAGACCATGCAGCAGATGTGTCCACTA
TCATTGCAGAATCAGGTTTAGCGTTGTTAGGAGCCGTCTTCCTGATAACT
CCGCGCATGGTAACGTTTCTAGGAACGGTAGCGGTTGGATTTGTTTTACC
GTGCTACTTGTCACAGGGAGTAATAGAATCCCGCGATTCGAAAAGCCTCT
ACCGTCATAATTGGTTATCCTATTGGAGCATATTATATTTGATTGAGATA
GCGTACACATCCACAGCGCAGGCTTTGGGGTGGCTTCCATTGTGGTACCA
CGTTAAACTGGCGGTTGTGTTGTGGTTGCAGCTTCCCTATTTTCGAGGAG
CAGCAATTGTACTGGACCGAGTAATGGCGTGTTTGGGTGCGACGATGTCG
TCTGTGCAAAGACAAGTTATAACGCCAAGAAAGAAGAAACGGGCCTGA

protein sequence of Gcaud1845.t1

>Gcaud1845.t1 ID=Gcaud1845.t1|Name=Gcaud1845.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=266bp
MSKSSDSLYPSSMSALLDMPENEKEHEALELATLRFWVVFALAWAARSLL
RYFCPIMFEGFLVEFDNFLLYFLLWTELDITKGAETVYSLISETMRTRIR
RQDRNRLEKLNVVLRLLVATGVLNEDHAADVSTIIAESGLALLGAVFLIT
PRMVTFLGTVAVGFVLPCYLSQGVIESRDSKSLYRHNWLSYWSILYLIEI
AYTSTAQALGWLPLWYHVKLAVVLWLQLPYFRGAAIVLDRVMACLGATMS
SVQRQVITPRKKKRA*

mRNA from alignment at NODE_207_length_37223_cov_4.468356:20746..21543+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1845.t1 ID=Gcaud1845.t1|Name=Gcaud1845.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=798bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:20746..21543+ (Gracilaria caudata M_176_S67 male)
ATGTCCAAGTCTAGTGATTCTCTTTATCCTTCTTCCATGTCAGCGCTTTT
GGACATGCCTGAAAATGAGAAGGAGCATGAAGCGTTAGAACTTGCAACGT
TGCGTTTTTGGGTTGTTTTTGCTCTTGCCTGGGCAGCCCGTTCACTTCTG
AGATACTTCTGTCCCATCATGTTTGAAGGATTTCTTGTCGAATTTGATAA
CTTTCTCTTGTATTTCTTGCTATGGACAGAACTGGATATCACCAAGGGAG
CGGAAACAGTTTACTCGCTCATATCCGAGACCATGAGAACTAGAATACGA
AGGCAAGATCGAAATAGGTTGGAGAAGCTTAACGTCGTTTTGAGACTTCT
CGTGGCCACAGGTGTCTTGAATGAAGACCATGCAGCAGATGTGTCCACTA
TCATTGCAGAATCAGGTTTAGCGTTGTTAGGAGCCGTCTTCCTGATAACT
CCGCGCATGGTAACGTTTCTAGGAACGGTAGCGGTTGGATTTGTTTTACC
GTGCTACTTGTCACAGGGAGTAATAGAATCCCGCGATTCGAAAAGCCTCT
ACCGTCATAATTGGTTATCCTATTGGAGCATATTATATTTGATTGAGATA
GCGTACACATCCACAGCGCAGGCTTTGGGGTGGCTTCCATTGTGGTACCA
CGTTAAACTGGCGGTTGTGTTGTGGTTGCAGCTTCCCTATTTTCGAGGAG
CAGCAATTGTACTGGACCGAGTAATGGCGTGTTTGGGTGCGACGATGTCG
TCTGTGCAAAGACAAGTTATAACGCCAAGAAAGAAGAAACGGGCCTGA

Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:20746..21543+

>Gcaud1845.t1 ID=Gcaud1845.t1|Name=Gcaud1845.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=798bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:20746..21543+ (Gracilaria caudata M_176_S67 male)
ATGTCCAAGTCTAGTGATTCTCTTTATCCTTCTTCCATGTCAGCGCTTTT
GGACATGCCTGAAAATGAGAAGGAGCATGAAGCGTTAGAACTTGCAACGT
TGCGTTTTTGGGTTGTTTTTGCTCTTGCCTGGGCAGCCCGTTCACTTCTG
AGATACTTCTGTCCCATCATGTTTGAAGGATTTCTTGTCGAATTTGATAA
CTTTCTCTTGTATTTCTTGCTATGGACAGAACTGGATATCACCAAGGGAG
CGGAAACAGTTTACTCGCTCATATCCGAGACCATGAGAACTAGAATACGA
AGGCAAGATCGAAATAGGTTGGAGAAGCTTAACGTCGTTTTGAGACTTCT
CGTGGCCACAGGTGTCTTGAATGAAGACCATGCAGCAGATGTGTCCACTA
TCATTGCAGAATCAGGTTTAGCGTTGTTAGGAGCCGTCTTCCTGATAACT
CCGCGCATGGTAACGTTTCTAGGAACGGTAGCGGTTGGATTTGTTTTACC
GTGCTACTTGTCACAGGGAGTAATAGAATCCCGCGATTCGAAAAGCCTCT
ACCGTCATAATTGGTTATCCTATTGGAGCATATTATATTTGATTGAGATA
GCGTACACATCCACAGCGCAGGCTTTGGGGTGGCTTCCATTGTGGTACCA
CGTTAAACTGGCGGTTGTGTTGTGGTTGCAGCTTCCCTATTTTCGAGGAG
CAGCAATTGTACTGGACCGAGTAATGGCGTGTTTGGGTGCGACGATGTCG
TCTGTGCAAAGACAAGTTATAACGCCAAGAAAGAAGAAACGGGCCTGA