Gcaud1850.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1850.t1
Unique Name	Gcaud1850.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	193

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_207_length_37223_cov_4.468356	contig	NODE_207_length_37223_cov_4.468356:28919..29597 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4006.Lus10023387
PFAMs	Ribosomal_L19e
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K02885
KEGG Pathway	ko03010,map03010
KEGG Module	M00177,M00179
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0019538,GO:0022625,GO:0022626,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue	2.31e-84
EggNOG OGs	COG1916@1\|root,COG2147@1\|root,KOG1696@2759\|Eukaryota,KOG2860@2759\|Eukaryota,37M2R@33090\|Viridiplantae,3GC4Q@35493\|Streptophyta,4JIXN@91835\|fabids
Description	Belongs to the eukaryotic ribosomal protein eL19 family
COG category	J
BRITE	br01610,ko00000,ko00001,ko00002,ko03011

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1850	Gcaud1850	Gracilaria caudata M_176_S67 male	gene	NODE_207_length_37223_cov_4.468356 28919..29597 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1850.t1	Gcaud1850.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_207_length_37223_cov_4.468356 28919..29597 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1850.t1.stop1	Gcaud1850.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_207_length_37223_cov_4.468356 28919..28921 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1850.t1.CDS1	Gcaud1850.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_207_length_37223_cov_4.468356 28919..29385 -
Gcaud1850.t1.CDS2	Gcaud1850.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_207_length_37223_cov_4.468356 29486..29597 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1850.t1.exon1	Gcaud1850.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_207_length_37223_cov_4.468356 28919..29385 -
Gcaud1850.t1.exon2	Gcaud1850.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_207_length_37223_cov_4.468356 29486..29597 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1850.t1.intron1	Gcaud1850.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_207_length_37223_cov_4.468356 29386..29485 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1850.t1.start1	Gcaud1850.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_207_length_37223_cov_4.468356 29595..29597 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_207_length_37223_cov_4.468356:28919..29597-
coding sequence from alignment at NODE_207_length_37223_cov_4.468356:28919..29597-

mRNA sequence

>Gcaud1850.t1 ID=Gcaud1850.t1|Name=Gcaud1850.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=193bp
MVSLKLQKRLAASVLRCGKNKVWLDPNEIQEIAIANSRQNIRKLVSDGLV
IKKPVTVHSRARVRKLHAAKSKGRHCGYGKRLGTRDARLPQKVLWMRRQR
VLRNLLRKYREAKKIDRYLYHELYLRCKGNVFKNRRVLMESIHKAKAEKA
RSKALAEQFEARRLKNRAARERKAARLEERRKQEGVARVAAS*

spliced messenger RNA

>Gcaud1850.t1 ID=Gcaud1850.t1|Name=Gcaud1850.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=579bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:28919..29597- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCGCTCAAACTCCAGAAGAGGCTGGCAGCCTCTGTACTGCGATG
CGGCAAGAACAAAGTATGGCTTGATCCCAATGAAATTCAGGAGATCGCTA
TCGCCAACTCCAGACAAAATATTCGAAAGTTGGTGTCTGATGGTCTTGTC
ATTAAGAAGCCGGTTACCGTCCACTCTCGTGCTCGAGTGCGTAAGCTCCA
CGCTGCGAAGAGTAAGGGTCGACATTGCGGCTACGGCAAGCGTCTCGGTA
CACGCGATGCCCGCCTTCCCCAAAAGGTCCTATGGATGAGGCGCCAACGT
GTGCTTCGTAATCTTCTTCGCAAATATCGCGAGGCCAAGAAGATCGATAG
GTACCTCTATCATGAGTTATATCTCAGGTGCAAGGGTAACGTCTTTAAGA
ACAGAAGAGTGCTCATGGAATCTATCCATAAGGCCAAGGCTGAGAAGGCT
CGTTCTAAGGCTCTTGCGGAACAGTTCGAAGCGCGTCGTCTCAAGAACCG
TGCTGCTAGGGAGCGCAAGGCTGCTCGATTGGAAGAGCGTCGTAAGCAAG
AGGGTGTGGCTCGTGTTGCGGCTTCGTAG

protein sequence of Gcaud1850.t1

>Gcaud1850.t1 ID=Gcaud1850.t1|Name=Gcaud1850.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=193bp
MVSLKLQKRLAASVLRCGKNKVWLDPNEIQEIAIANSRQNIRKLVSDGLV
IKKPVTVHSRARVRKLHAAKSKGRHCGYGKRLGTRDARLPQKVLWMRRQR
VLRNLLRKYREAKKIDRYLYHELYLRCKGNVFKNRRVLMESIHKAKAEKA
RSKALAEQFEARRLKNRAARERKAARLEERRKQEGVARVAAS*

mRNA from alignment at NODE_207_length_37223_cov_4.468356:28919..29597-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1850.t1 ID=Gcaud1850.t1|Name=Gcaud1850.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=679bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:28919..29597- (Gracilaria caudata M_176_S67 male)
ATGGTGTCGCTCAAACTCCAGAAGAGGCTGGCAGCCTCTGTACTGCGATG
CGGCAAGAACAAAGTATGGCTTGATCCCAATGAAATTCAGGAGATCGCTA
TCGCCAACTCCAGTAAGTCTTTGCATGGCCTTCTCCGAAATGCGCCATCG
CCCATCAATCTCGTAAAACTCTCGTTTGCGATCTAACTCACCCCTTTGTA
CTTCACGTCCAGGACAAAATATTCGAAAGTTGGTGTCTGATGGTCTTGTC
ATTAAGAAGCCGGTTACCGTCCACTCTCGTGCTCGAGTGCGTAAGCTCCA
CGCTGCGAAGAGTAAGGGTCGACATTGCGGCTACGGCAAGCGTCTCGGTA
CACGCGATGCCCGCCTTCCCCAAAAGGTCCTATGGATGAGGCGCCAACGT
GTGCTTCGTAATCTTCTTCGCAAATATCGCGAGGCCAAGAAGATCGATAG
GTACCTCTATCATGAGTTATATCTCAGGTGCAAGGGTAACGTCTTTAAGA
ACAGAAGAGTGCTCATGGAATCTATCCATAAGGCCAAGGCTGAGAAGGCT
CGTTCTAAGGCTCTTGCGGAACAGTTCGAAGCGCGTCGTCTCAAGAACCG
TGCTGCTAGGGAGCGCAAGGCTGCTCGATTGGAAGAGCGTCGTAAGCAAG
AGGGTGTGGCTCGTGTTGCGGCTTCGTAG

Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:28919..29597-

>Gcaud1850.t1 ID=Gcaud1850.t1|Name=Gcaud1850.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=579bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:28919..29597- (Gracilaria caudata M_176_S67 male)
ATGGTGTCGCTCAAACTCCAGAAGAGGCTGGCAGCCTCTGTACTGCGATG
CGGCAAGAACAAAGTATGGCTTGATCCCAATGAAATTCAGGAGATCGCTA
TCGCCAACTCCAGACAAAATATTCGAAAGTTGGTGTCTGATGGTCTTGTC
ATTAAGAAGCCGGTTACCGTCCACTCTCGTGCTCGAGTGCGTAAGCTCCA
CGCTGCGAAGAGTAAGGGTCGACATTGCGGCTACGGCAAGCGTCTCGGTA
CACGCGATGCCCGCCTTCCCCAAAAGGTCCTATGGATGAGGCGCCAACGT
GTGCTTCGTAATCTTCTTCGCAAATATCGCGAGGCCAAGAAGATCGATAG
GTACCTCTATCATGAGTTATATCTCAGGTGCAAGGGTAACGTCTTTAAGA
ACAGAAGAGTGCTCATGGAATCTATCCATAAGGCCAAGGCTGAGAAGGCT
CGTTCTAAGGCTCTTGCGGAACAGTTCGAAGCGCGTCGTCTCAAGAACCG
TGCTGCTAGGGAGCGCAAGGCTGCTCGATTGGAAGAGCGTCGTAAGCAAG
AGGGTGTGGCTCGTGTTGCGGCTTCGTAG