Gcaud1846.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1846.t1
Unique NameGcaud1846.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length174
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_207_length_37223_cov_4.468356contigNODE_207_length_37223_cov_4.468356:21630..22151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173025.GEI7407_3653
PFAMsDUF1292,DUF3727
Max annot lvl1117|Cyanobacteria
Evalue1.4e-11
EggNOG OGs2B3Q5@1|root,31WDP@2|Bacteria,1G5B3@1117|Cyanobacteria,1H96Y@1150|Oscillatoriales
DescriptionPFAM Uncharacterised protein family UPF0473
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1846Gcaud1846Gracilaria caudata M_176_S67 malegeneNODE_207_length_37223_cov_4.468356 21630..22151 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1846.t1.stop1Gcaud1846.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_207_length_37223_cov_4.468356 21630..21632 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1846.t1.CDS1Gcaud1846.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_207_length_37223_cov_4.468356 21630..22151 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1846.t1.exon1Gcaud1846.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_207_length_37223_cov_4.468356 21630..22151 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1846.t1.start1Gcaud1846.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_207_length_37223_cov_4.468356 22149..22151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1846.t1Gcaud1846.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_207_length_37223_cov_4.468356 21630..22151 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1846.t1 ID=Gcaud1846.t1|Name=Gcaud1846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=174bp
LQVTLRDPVTRRSIIVGIEESFDFDGKSHILCYPIDDPVAFVENLHDRKL
HPIMDDDVIAELYPSAKAVCAERDIELKNTAYIMTAEDESEFAYEDDEDD
EDDEEDDDDDLTTVEVIAEFLHKETEYMVIRPKQSIWLVAREENGTYTPI
SDDQLERVRPTVETILSERELSQ*
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spliced messenger RNA

>Gcaud1846.t1 ID=Gcaud1846.t1|Name=Gcaud1846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:21630..22151- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCAAGTGACTCTTCGCGATCCCGTCACACGACGTTCCATTATTGTTGG
GATAGAAGAATCCTTCGATTTCGATGGAAAATCACACATTCTATGTTACC
CAATCGATGATCCTGTCGCGTTCGTCGAAAACTTACATGACAGGAAGCTT
CATCCTATTATGGATGACGATGTGATCGCCGAGCTCTATCCAAGTGCAAA
GGCTGTTTGTGCGGAACGCGATATCGAGCTAAAGAACACTGCCTACATCA
TGACGGCAGAGGATGAAAGTGAGTTTGCGTATGAGGACGACGAGGACGAC
GAGGACGACGAGGAAGATGATGACGATGATCTTACTACCGTGGAGGTAAT
TGCTGAGTTCTTGCACAAAGAAACAGAGTACATGGTTATCCGTCCTAAGC
AAAGCATTTGGCTTGTGGCGAGAGAAGAAAATGGAACATATACTCCAATT
AGCGACGACCAGCTCGAACGAGTCCGACCAACTGTTGAAACAATCCTCTC
TGAACGTGAACTAAGTCAATGA
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protein sequence of Gcaud1846.t1

>Gcaud1846.t1 ID=Gcaud1846.t1|Name=Gcaud1846.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=174bp
LQVTLRDPVTRRSIIVGIEESFDFDGKSHILCYPIDDPVAFVENLHDRKL
HPIMDDDVIAELYPSAKAVCAERDIELKNTAYIMTAEDESEFAYEDDEDD
EDDEEDDDDDLTTVEVIAEFLHKETEYMVIRPKQSIWLVAREENGTYTPI
SDDQLERVRPTVETILSERELSQ*
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mRNA from alignment at NODE_207_length_37223_cov_4.468356:21630..22151-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1846.t1 ID=Gcaud1846.t1|Name=Gcaud1846.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=522bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:21630..22151- (Gracilaria caudata M_176_S67 male)
CTGCAAGTGACTCTTCGCGATCCCGTCACACGACGTTCCATTATTGTTGG
GATAGAAGAATCCTTCGATTTCGATGGAAAATCACACATTCTATGTTACC
CAATCGATGATCCTGTCGCGTTCGTCGAAAACTTACATGACAGGAAGCTT
CATCCTATTATGGATGACGATGTGATCGCCGAGCTCTATCCAAGTGCAAA
GGCTGTTTGTGCGGAACGCGATATCGAGCTAAAGAACACTGCCTACATCA
TGACGGCAGAGGATGAAAGTGAGTTTGCGTATGAGGACGACGAGGACGAC
GAGGACGACGAGGAAGATGATGACGATGATCTTACTACCGTGGAGGTAAT
TGCTGAGTTCTTGCACAAAGAAACAGAGTACATGGTTATCCGTCCTAAGC
AAAGCATTTGGCTTGTGGCGAGAGAAGAAAATGGAACATATACTCCAATT
AGCGACGACCAGCTCGAACGAGTCCGACCAACTGTTGAAACAATCCTCTC
TGAACGTGAACTAAGTCAATGA
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Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:21630..22151-

>Gcaud1846.t1 ID=Gcaud1846.t1|Name=Gcaud1846.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=522bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:21630..22151- (Gracilaria caudata M_176_S67 male)
CTGCAAGTGACTCTTCGCGATCCCGTCACACGACGTTCCATTATTGTTGG
GATAGAAGAATCCTTCGATTTCGATGGAAAATCACACATTCTATGTTACC
CAATCGATGATCCTGTCGCGTTCGTCGAAAACTTACATGACAGGAAGCTT
CATCCTATTATGGATGACGATGTGATCGCCGAGCTCTATCCAAGTGCAAA
GGCTGTTTGTGCGGAACGCGATATCGAGCTAAAGAACACTGCCTACATCA
TGACGGCAGAGGATGAAAGTGAGTTTGCGTATGAGGACGACGAGGACGAC
GAGGACGACGAGGAAGATGATGACGATGATCTTACTACCGTGGAGGTAAT
TGCTGAGTTCTTGCACAAAGAAACAGAGTACATGGTTATCCGTCCTAAGC
AAAGCATTTGGCTTGTGGCGAGAGAAGAAAATGGAACATATACTCCAATT
AGCGACGACCAGCTCGAACGAGTCCGACCAACTGTTGAAACAATCCTCTC
TGAACGTGAACTAAGTCAATGA
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