Gcaud1842.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1842.t1
Unique NameGcaud1842.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length179
Homology
BLAST of Gcaud1842.t1 vs. uniprot
Match: A0A2V3J8B9_9FLOR (Telomere-associated protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8B9_9FLOR)

HSP 1 Score: 89.7 bits (221), Expect = 8.780e-18
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 0
Query:   22 KATRKKGRRESYTRFSASEEAHLLEGVRKYGAGKWKKILTCYEFHSKRTAVDLKDKYRNIIRAQ 85
            +A++  GRR+SYTRF+A EEA LL+GVR +G G WKKIL  Y FH KRTAVDLKDKYRN+ RA+
Sbjct:  276 RASKTSGRRDSYTRFTAEEEAMLLDGVRVFGVGNWKKILNSYRFHWKRTAVDLKDKYRNMTRAK 339          
BLAST of Gcaud1842.t1 vs. uniprot
Match: M2VTP0_GALSU (DNA-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTP0_GALSU)

HSP 1 Score: 68.6 bits (166), Expect = 1.070e-10
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 0
Query:   18 RTVAKATRKKGRRESYTRFSASEEAHLLEGVRKYGAGKWKKILTCYEFHSKRTAVDLKDKYRNII 82
            R++ K+ RKK    SY RF+  EE +L  G+ ++G G+WK IL  Y FH KRT VDLKDKYRN++
Sbjct:  185 RSIIKSKRKK----SYIRFTPEEEMNLRIGISQFGVGRWKNILYSYPFHPKRTCVDLKDKYRNML 245          
BLAST of Gcaud1842.t1 vs. uniprot
Match: A0A2R5GZ31_9STRA (Telomere repeat-binding protein 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZ31_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 9.180e-8
Identity = 29/50 (58.00%), Postives = 41/50 (82.00%), Query Frame = 0
Query:   36 FSASEEAHLLEGVRKYGAG--KWKKILTCYEFHSKRTAVDLKDKYRNIIR 83
            F+  E A+L+EGV K+ +   KW+KIL+ YEF+S+RT+VDLKDK+RNI+R
Sbjct:    9 FTEQEIANLVEGVEKFKSSRQKWRKILSAYEFNSRRTSVDLKDKWRNIVR 58          
BLAST of Gcaud1842.t1 vs. uniprot
Match: L1JWB7_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JWB7_GUITC)

HSP 1 Score: 59.7 bits (143), Expect = 3.030e-7
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   31 ESYTRFSASEEAHLLEGVRKYGAGKWKKILTCYEFHSKRTAVDLKDKYRNIIRAQ 85
            + Y R++A EE  L +G+ +YG  KW  IL+ ++FH  R+AVDLKDK+RN+ + Q
Sbjct:  562 KGYIRWTAEEEETLRKGIERYGPSKWTMILSNFDFHPSRSAVDLKDKWRNLQKKQ 616          
BLAST of Gcaud1842.t1 vs. uniprot
Match: L8GYK3_ACACA (Myblike DNA-binding domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GYK3_ACACA)

HSP 1 Score: 59.3 bits (142), Expect = 4.350e-7
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 0
Query:   28 GRRESYTRFSASEEAHLL-EGVRKYGAGKWKKILTCYEFHSKRTAVDLKDKYRNIIRAQERE 88
            GRR+   RF   +E  LL EGVR +G G W KIL+ YEF   RT+VDLKDKYRN+++ Q +E
Sbjct:  504 GRRKK--RFWTDDEIELLLEGVRTHGLGCWAKILSEYEFAPGRTSVDLKDKYRNLLKLQAKE 563          
BLAST of Gcaud1842.t1 vs. uniprot
Match: A0A6D2JUL9_9BRAS (Uncharacterized protein n=5 Tax=Coluteocarpeae TaxID=1394505 RepID=A0A6D2JUL9_9BRAS)

HSP 1 Score: 58.9 bits (141), Expect = 5.490e-7
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   29 RRESYTRFSASEEAHLLEGVRKYGAGKWKKILTC-YEFHSKRTAVDLKDKYRNIIRA 84
            RR+ +  ++ SE   L+EGV KYGAGKW +I    +  HS RT+VDLKDK+RN++RA
Sbjct:  477 RRKHHRAWTLSEVTKLVEGVSKYGAGKWSEIKKLSFSSHSYRTSVDLKDKWRNLLRA 533          
BLAST of Gcaud1842.t1 vs. uniprot
Match: UPI00053A3FCD (uncharacterized protein LOC104701948 isoform X1 n=6 Tax=Camelina sativa TaxID=90675 RepID=UPI00053A3FCD)

HSP 1 Score: 58.5 bits (140), Expect = 7.710e-7
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 0
Query:   29 RRESYTRFSASEEAHLLEGVRKYGAGKWKKILT-CYEFHSKRTAVDLKDKYRNIIRA 84
            RR+ +  ++ SE  +L+EGV KYGAGKW +I    +  HS RT+VDLKDK+RN+++A
Sbjct:  579 RRKHHRAWTLSEVTNLVEGVSKYGAGKWSEIKKHSFSSHSYRTSVDLKDKWRNLLKA 635          
BLAST of Gcaud1842.t1 vs. uniprot
Match: UPI00053C7204 (uncharacterized protein LOC104808052 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C7204)

HSP 1 Score: 58.2 bits (139), Expect = 1.030e-6
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   29 RRESYTRFSASEEAHLLEGVRKYGAGKWKKILTC-YEFHSKRTAVDLKDKYRNIIRA 84
            RR+ +  +S SE   L+EGV KYGAGKW +I    +  HS RT+VDLKDK+RN+++A
Sbjct:  529 RRKHHRAWSLSEVIKLVEGVAKYGAGKWSEIKRLSFASHSYRTSVDLKDKWRNLLKA 585          
BLAST of Gcaud1842.t1 vs. uniprot
Match: A0A6J0K5F4_RAPSA (uncharacterized protein LOC108814762 n=3 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0K5F4_RAPSA)

HSP 1 Score: 57.8 bits (138), Expect = 1.370e-6
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 0
Query:   29 RRESYTRFSASEEAHLLEGVRKYGAGKWKKILTC-YEFHSKRTAVDLKDKYRNIIR 83
            RR+ +  ++ SE   L+EGV KYGAGKW +I    +  HS RT+VDLKDK+RN++R
Sbjct:  473 RRKHHRAWTLSEVTQLVEGVAKYGAGKWSEIKKLSFSSHSYRTSVDLKDKWRNLLR 528          
BLAST of Gcaud1842.t1 vs. uniprot
Match: M4DHR7_BRARP (Uncharacterized protein n=17 Tax=Brassica TaxID=3705 RepID=M4DHR7_BRARP)

HSP 1 Score: 57.8 bits (138), Expect = 1.380e-6
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 0
Query:   29 RRESYTRFSASEEAHLLEGVRKYGAGKWKKILT-CYEFHSKRTAVDLKDKYRNIIRA 84
            RR+ +  ++ +E   L+EGV KYGAGKW +I    +  HS RT+VDLKDK+RN++RA
Sbjct:  495 RRKHHRAWTLTEVTTLVEGVSKYGAGKWSEIKKFSFSSHSHRTSVDLKDKWRNLLRA 551          
The following BLAST results are available for this feature:
BLAST of Gcaud1842.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J8B9_9FLOR8.780e-1867.19Telomere-associated protein 1 n=1 Tax=Gracilariops... [more]
M2VTP0_GALSU1.070e-1052.31DNA-binding protein n=1 Tax=Galdieria sulphuraria ... [more]
A0A2R5GZ31_9STRA9.180e-858.00Telomere repeat-binding protein 2 n=1 Tax=Hondaea ... [more]
L1JWB7_GUITC3.030e-747.27Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
L8GYK3_ACACA4.350e-754.84Myblike DNA-binding domain containing protein n=1 ... [more]
A0A6D2JUL9_9BRAS5.490e-752.63Uncharacterized protein n=5 Tax=Coluteocarpeae Tax... [more]
UPI00053A3FCD7.710e-750.88uncharacterized protein LOC104701948 isoform X1 n=... [more]
UPI00053C72041.030e-652.63uncharacterized protein LOC104808052 isoform X1 n=... [more]
A0A6J0K5F4_RAPSA1.370e-651.79uncharacterized protein LOC108814762 n=3 Tax=Rapha... [more]
M4DHR7_BRARP1.380e-650.88Uncharacterized protein n=17 Tax=Brassica TaxID=37... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 32..84
e-value: 4.0E-7
score: 39.7
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 28..82
score: 6.295328
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 35..81
e-value: 6.6E-9
score: 35.9
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 35..86
score: 11.504105
NoneNo IPR availableGENE3D1.10.246.220coord: 21..118
e-value: 2.6E-18
score: 67.8
NoneNo IPR availablePANTHERPTHR46734TELOMERIC REPEAT-BINDING FACTOR 1 TERF1coord: 23..95
NoneNo IPR availablePANTHERPTHR46734:SF1TELOMERIC REPEAT-BINDING FACTOR 1coord: 23..95
NoneNo IPR availableCDDcd11660SANT_TRFcoord: 35..83
e-value: 2.26294E-20
score: 77.6075
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 35..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_207_length_37223_cov_4.468356contigNODE_207_length_37223_cov_4.468356:12825..13361 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1842.t1Gcaud1842.t1Gracilaria caudata M_176_S67 malemRNANODE_207_length_37223_cov_4.468356 12825..13361 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1842.t1 ID=Gcaud1842.t1|Name=Gcaud1842.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=179bp
MTSSATVQMNPSVKITGRTVAKATRKKGRRESYTRFSASEEAHLLEGVRK
YGAGKWKKILTCYEFHSKRTAVDLKDKYRNIIRAQEREKRQRLERMGITN
EKNGVDVAHLCNSFNRSSMAFGMGRVGGNANDPRVSVGGYNARSSTDGAS
VNGTEKRIEAPSAMKLTRLLCGPEGESC*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR017930Myb_dom
IPR009057Homeobox-like_sf