Gcaud1849.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1849.t1
Unique NameGcaud1849.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_207_length_37223_cov_4.468356contigNODE_207_length_37223_cov_4.468356:26102..26594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1849Gcaud1849Gracilaria caudata M_176_S67 malegeneNODE_207_length_37223_cov_4.468356 26102..26594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1849.t1Gcaud1849.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_207_length_37223_cov_4.468356 26102..26594 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1849.t1.stop1Gcaud1849.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_207_length_37223_cov_4.468356 26102..26104 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1849.t1.CDS1Gcaud1849.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_207_length_37223_cov_4.468356 26102..26185 -
Gcaud1849.t1.CDS2Gcaud1849.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_207_length_37223_cov_4.468356 26265..26594 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1849.t1.exon1Gcaud1849.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_207_length_37223_cov_4.468356 26102..26185 -
Gcaud1849.t1.exon2Gcaud1849.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_207_length_37223_cov_4.468356 26265..26594 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1849.t1.intron1Gcaud1849.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_207_length_37223_cov_4.468356 26186..26264 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1849.t1.start1Gcaud1849.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_207_length_37223_cov_4.468356 26592..26594 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1849.t1 ID=Gcaud1849.t1|Name=Gcaud1849.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=138bp
MGGGRRKFRHCRLGSSFDDAEHLHGLAHGVTSYKGNAFTVRNRNFAEQQL
ELCVARTQLMKRVIEETGQDHIPSGEETDSNKFFVNDPLLPRCRHNPLHA
VPLRNLRKHELSCPSNPEKRRRTKEHEYHYSYMTPAA*
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spliced messenger RNA

>Gcaud1849.t1 ID=Gcaud1849.t1|Name=Gcaud1849.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=414bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:26102..26594- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGGCGGGCGACGCAAGTTTCGACATTGCCGTTTGGGCAGTTCGTT
TGATGATGCAGAGCATTTGCATGGACTGGCACATGGTGTTACTTCTTACA
AAGGAAATGCCTTTACGGTTCGTAACAGAAACTTTGCTGAACAACAGTTG
GAACTATGCGTCGCCCGCACACAGCTTATGAAACGCGTGATCGAAGAAAC
AGGGCAAGACCATATTCCATCTGGTGAGGAAACGGATTCAAACAAGTTTT
TCGTGAATGATCCTTTATTGCCAAGATGTCGTCACAACCCATTACACGCA
GTCCCGCTTCGAAATCTAAGGAAACACGAGCTTTCTTGCCCATCGAATCC
AGAGAAACGAAGGCGCACCAAAGAACATGAATATCATTATTCATACATGA
CACCTGCTGCTTGA
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protein sequence of Gcaud1849.t1

>Gcaud1849.t1 ID=Gcaud1849.t1|Name=Gcaud1849.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=138bp
MGGGRRKFRHCRLGSSFDDAEHLHGLAHGVTSYKGNAFTVRNRNFAEQQL
ELCVARTQLMKRVIEETGQDHIPSGEETDSNKFFVNDPLLPRCRHNPLHA
VPLRNLRKHELSCPSNPEKRRRTKEHEYHYSYMTPAA*
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mRNA from alignment at NODE_207_length_37223_cov_4.468356:26102..26594-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1849.t1 ID=Gcaud1849.t1|Name=Gcaud1849.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=493bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:26102..26594- (Gracilaria caudata M_176_S67 male)
ATGGGTGGCGGGCGACGCAAGTTTCGACATTGCCGTTTGGGCAGTTCGTT
TGATGATGCAGAGCATTTGCATGGACTGGCACATGGTGTTACTTCTTACA
AAGGAAATGCCTTTACGGTTCGTAACAGAAACTTTGCTGAACAACAGTTG
GAACTATGCGTCGCCCGCACACAGCTTATGAAACGCGTGATCGAAGAAAC
AGGGCAAGACCATATTCCATCTGGTGAGGAAACGGATTCAAACAAGTTTT
TCGTGAATGATCCTTTATTGCCAAGATGTCGTCACAACCCATTACACGCA
GTCCCGCTTCGAAATCTAAGGAAACACGAGGTGAGTTACACGGTAGGATA
AAACCTATGTACATTGGAAATAGAAGTTCAACATTCTGACTTCAGCCATT
TGATGACAGCTTTCTTGCCCATCGAATCCAGAGAAACGAAGGCGCACCAA
AGAACATGAATATCATTATTCATACATGACACCTGCTGCTTGA
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Coding sequence (CDS) from alignment at NODE_207_length_37223_cov_4.468356:26102..26594-

>Gcaud1849.t1 ID=Gcaud1849.t1|Name=Gcaud1849.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=414bp|location=Sequence derived from alignment at NODE_207_length_37223_cov_4.468356:26102..26594- (Gracilaria caudata M_176_S67 male)
ATGGGTGGCGGGCGACGCAAGTTTCGACATTGCCGTTTGGGCAGTTCGTT
TGATGATGCAGAGCATTTGCATGGACTGGCACATGGTGTTACTTCTTACA
AAGGAAATGCCTTTACGGTTCGTAACAGAAACTTTGCTGAACAACAGTTG
GAACTATGCGTCGCCCGCACACAGCTTATGAAACGCGTGATCGAAGAAAC
AGGGCAAGACCATATTCCATCTGGTGAGGAAACGGATTCAAACAAGTTTT
TCGTGAATGATCCTTTATTGCCAAGATGTCGTCACAACCCATTACACGCA
GTCCCGCTTCGAAATCTAAGGAAACACGAGCTTTCTTGCCCATCGAATCC
AGAGAAACGAAGGCGCACCAAAGAACATGAATATCATTATTCATACATGA
CACCTGCTGCTTGA
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