Gcaud1932.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1932.t1
Unique NameGcaud1932.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:29918..30415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81985.XP_006279708.1
PFAMsCyt-b5
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006950,GO:0006952,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0098542,GO:0098827
Evalue6.3e-31
EggNOG OGsCOG5274@1|root,KOG0537@2759|Eukaryota,37UZ2@33090|Viridiplantae,3GISV@35493|Streptophyta,3HZZB@3699|Brassicales
DescriptionCytochrome b5
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1932Gcaud1932Gracilaria caudata M_176_S67 malegeneNODE_105_length_50300_cov_4.471768 29918..30415 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1932.t1Gcaud1932.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_105_length_50300_cov_4.471768 29918..30415 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1932.t1.stop1Gcaud1932.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_105_length_50300_cov_4.471768 29918..29920 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1932.t1.CDS1Gcaud1932.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 29918..30286 -
Gcaud1932.t1.CDS2Gcaud1932.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_105_length_50300_cov_4.471768 30383..30415 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1932.t1.exon1Gcaud1932.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 29918..30286 -
Gcaud1932.t1.exon2Gcaud1932.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_105_length_50300_cov_4.471768 30383..30415 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1932.t1.intron1Gcaud1932.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_105_length_50300_cov_4.471768 30287..30382 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1932.t1.start1Gcaud1932.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_105_length_50300_cov_4.471768 30413..30415 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1932.t1 ID=Gcaud1932.t1|Name=Gcaud1932.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=134bp
MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSS
GRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEQEKLERGES
DEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK*
back to top

spliced messenger RNA

>Gcaud1932.t1 ID=Gcaud1932.t1|Name=Gcaud1932.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:29918..30415- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGGTTCCAAAGCATATCCCATGGTGGAGGTGGCACGGCATACTTC
GAGCTCATCGTGCTGGATGGTGATCGACTCCAAAGTGTACGACGTCACCA
GCTTTCTTCTCGAGCATCCAGGCGGAGATGATATCCTACTCGACTCCTCC
GGACGAGACTCAACACGAGAATTTGAAGATGTGGGGCATTCATCGGATGC
TCGTGCACAACTAGCCGAACTCCACATCGGAGACTTACGCGATCCAACAC
AAGAGGAAATTGAGCAAGCCGAGCAAGAGAAACTAGAAAGAGGCGAAAGT
GATGAAGCTCAAAAAGGTGGCGTTGTGGCTGCATTGGCAAAGTGGTTACT
CCCTCTGTTCTTGGTTGGTGTGGCATATGTTTTGCGCAACTACGCCAAGT
AA
back to top

protein sequence of Gcaud1932.t1

>Gcaud1932.t1 ID=Gcaud1932.t1|Name=Gcaud1932.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=134bp
MPGSKAYPMVEVARHTSSSSCWMVIDSKVYDVTSFLLEHPGGDDILLDSS
GRDSTREFEDVGHSSDARAQLAELHIGDLRDPTQEEIEQAEQEKLERGES
DEAQKGGVVAALAKWLLPLFLVGVAYVLRNYAK*
back to top

mRNA from alignment at NODE_105_length_50300_cov_4.471768:29918..30415-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1932.t1 ID=Gcaud1932.t1|Name=Gcaud1932.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:29918..30415- (Gracilaria caudata M_176_S67 male)
ATGCCAGGTTCCAAAGCATATCCCATGGTGGAGGTACGTGATTAACGTCA
AGCGAGCTTAAGAATTTCCTCAATAGCGGTCAAAGATATCTAATGCAGAT
CTACATTCCCTATCGTTATGATTTCATAGGTGGCACGGCATACTTCGAGC
TCATCGTGCTGGATGGTGATCGACTCCAAAGTGTACGACGTCACCAGCTT
TCTTCTCGAGCATCCAGGCGGAGATGATATCCTACTCGACTCCTCCGGAC
GAGACTCAACACGAGAATTTGAAGATGTGGGGCATTCATCGGATGCTCGT
GCACAACTAGCCGAACTCCACATCGGAGACTTACGCGATCCAACACAAGA
GGAAATTGAGCAAGCCGAGCAAGAGAAACTAGAAAGAGGCGAAAGTGATG
AAGCTCAAAAAGGTGGCGTTGTGGCTGCATTGGCAAAGTGGTTACTCCCT
CTGTTCTTGGTTGGTGTGGCATATGTTTTGCGCAACTACGCCAAGTAA
back to top

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:29918..30415-

>Gcaud1932.t1 ID=Gcaud1932.t1|Name=Gcaud1932.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=402bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:29918..30415- (Gracilaria caudata M_176_S67 male)
ATGCCAGGTTCCAAAGCATATCCCATGGTGGAGGTGGCACGGCATACTTC
GAGCTCATCGTGCTGGATGGTGATCGACTCCAAAGTGTACGACGTCACCA
GCTTTCTTCTCGAGCATCCAGGCGGAGATGATATCCTACTCGACTCCTCC
GGACGAGACTCAACACGAGAATTTGAAGATGTGGGGCATTCATCGGATGC
TCGTGCACAACTAGCCGAACTCCACATCGGAGACTTACGCGATCCAACAC
AAGAGGAAATTGAGCAAGCCGAGCAAGAGAAACTAGAAAGAGGCGAAAGT
GATGAAGCTCAAAAAGGTGGCGTTGTGGCTGCATTGGCAAAGTGGTTACT
CCCTCTGTTCTTGGTTGGTGTGGCATATGTTTTGCGCAACTACGCCAAGT
AA
back to top