Gcaud1929.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1929.t1
Unique Name	Gcaud1929.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	69

Homology

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BLAST of Gcaud1929.t1 vs. uniprot
Match: A0A2V3IPV1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV1_9FLOR)

HSP 1 Score: 110 bits (276), Expect = 1.200e-30
Identity = 53/68 (77.94%), Postives = 60/68 (88.24%), Query Frame = 0

Query:    1 MSEATALRTFTKNLRGRHLYPFAIGFSTVLFASAMLFRLKDEDYLDTPNKRFAKPFVKKDEAGDSHGH 68
            M+EATAL+T +KNLRGRHLYPFAIGF++VL ASA LFRL+DEDYL+T NKRFAKPFVKK    DSHGH
Sbjct:    1 MAEATALKTLSKNLRGRHLYPFAIGFTSVLLASAYLFRLEDEDYLNTVNKRFAKPFVKKAPGDDSHGH 68

The following BLAST results are available for this feature:

BLAST of Gcaud1929.t1 vs. uniprot

BLAST of Gcaud1929.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IPV1_9FLOR	1.200e-30	77.94	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 40..68
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..39
None	No IPR available	TMHMM	TMhelix		coord: 20..39

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:24894..25339 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1929.t1	Gcaud1929.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_105_length_50300_cov_4.471768 24894..25339 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1929.t1 ID=Gcaud1929.t1|Name=Gcaud1929.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=69bp
MSEATALRTFTKNLRGRHLYPFAIGFSTVLFASAMLFRLKDEDYLDTPNK
RFAKPFVKKDEAGDSHGH*