Gcaud2622.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2622.t1
Unique NameGcaud2622.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length327
Homology
BLAST of Gcaud2622.t1 vs. uniprot
Match: A0A2V3J441_9FLOR (SAGA-associated factor 11 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J441_9FLOR)

HSP 1 Score: 462 bits (1190), Expect = 1.180e-161
Identity = 254/326 (77.91%), Postives = 270/326 (82.82%), Query Frame = 0
Query:    1 MAPRKRRSRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNDSTDRMVVPSFVPPKTEIAPALRLKIRPLREITAAETPWPSVINQYSRAETVEEIDIRSAKCAQVYQDAHNFIVESESKDSNFTVVDVALRLYEHMIKWAVTEVVVQFKRQAYLAHETKRCTSAFAKVRVADEKGRHEKKRLARVVPGFYGSCLLYSERNVTVVCSNCTSNISASRYAQHVEKCLGRGGRMSSRAASARLRASAERAEKESQAEVDESPPRRRRHTSNGGNDRSTDAADMSAFSTGASKRRRMSPVPSVGSTGVSQASTYGRGLPPSGRTRMSPR 326
            MAPRKRRSR            XXXX              DNDS DRMVVPSFVPPKTEIAPALR+KIRPLREITA++ PW + + Q SR+ET+EEIDIR+AKCA  Y++AH  IVE+   D NFT  DVALRLYEHMI WAVTEVVVQFKR+AYLAHETKRCTSAFAKVRVADEKGRHEKK LARVVP  YGSCLLYSERNVTV CSNC SNISASRYAQHVEKCLGRGGRMSSRAASARLRASAERAEKESQAE+DESPPRRRRHTSNG NDRS D  DM  FS+GASKRRRMSPVPSVGS+ +SQ STYGRGLPPSGRTRMSPR
Sbjct:    1 MAPRKRRSRATSVSVTPSATGXXXXSHVSSPSSNRHSKSDNDSIDRMVVPSFVPPKTEIAPALRVKIRPLREITASDAPWSTSLQQNSRSETIEEIDIRAAKCANAYEEAHKIIVENGGVDCNFTTADVALRLYEHMINWAVTEVVVQFKRRAYLAHETKRCTSAFAKVRVADEKGRHEKKTLARVVPASYGSCLLYSERNVTVECSNCNSNISASRYAQHVEKCLGRGGRMSSRAASARLRASAERAEKESQAEMDESPPRRRRHTSNG-NDRSADLGDMPTFSSGASKRRRMSPVPSVGSSALSQGSTYGRGLPPSGRTRMSPR 325          
BLAST of Gcaud2622.t1 vs. uniprot
Match: R7QND3_CHOCR (SAGA-associated factor 11 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QND3_CHOCR)

HSP 1 Score: 168 bits (425), Expect = 3.110e-45
Identity = 110/227 (48.46%), Postives = 138/227 (60.79%), Query Frame = 0
Query:   83 VINQYSRAETVEEIDIRSAKCAQVYQDAHNFIVESESKDSNFTVVDVALRLYEHMIKWAVTEVVVQFKRQAYLAHETKRCTSAF--AKVRVADEKGRHEKKRLARVVPGFYGSCLLYSERNVTVVCSNCTSNISASRYAQHVEKCLGRGGRMSSRAASARLRASAERAEKESQAEVDESPPRRRRHTSNGGNDRSTDAADMSAFSTGASKRRRMSPVPSVGSTGVSQ 307
            V++Q   AE  ++   R       ++DA   I ++ +   +FT   VA+ LY  MI WA++ V VQFKR  +LA E  R  +A   A +   D  G + ++         YGS LLYS++NV V CSNC S++SASRYAQH EKCLGRGGRMSSRAASARLRASAERAEKE  AE+DE+P RRRR +S        D AD        +KRR+MSPVPS GS   SQ
Sbjct:  108 VVDQSMHAEGSDKEPTRDDNLLSAFEDA---IAQNGAHMDHFTTAAVAVHLYNDMINWAISHVAVQFKRSVFLASEANRYLTAIDAAALNPNDPPGTNPER---------YGSKLLYSDKNVNVECSNCGSSVSASRYAQHFEKCLGRGGRMSSRAASARLRASAERAEKEDAAELDEAPSRRRRSSS-------ADPADTGFAGGSYAKRRKMSPVPSGGSASASQ 315          
BLAST of Gcaud2622.t1 vs. uniprot
Match: A0A5J4YRK6_PORPP (SAGA-associated factor 11 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YRK6_PORPP)

HSP 1 Score: 62.4 bits (150), Expect = 2.920e-7
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 0
Query:  198 SERNVTVVCSNCTSNISASRYAQHVEKCLGRGGRMSSRAASARLRAS 244
            +ER V V CS C SN++A+R+A H EKCLG+GGR SSRAA+ARL+AS
Sbjct:  234 AERAVLVECSQCGSNVAAARFAPHYEKCLGKGGRSSSRAATARLKAS 280          
BLAST of Gcaud2622.t1 vs. uniprot
Match: A0A7S1XIN0_9RHOD (SAGA-associated factor 11 (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XIN0_9RHOD)

HSP 1 Score: 57.4 bits (137), Expect = 9.930e-7
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 0
Query:  199 ERNVTVVCSNCTSNISASRYAQHVEKCLGRGGRMSSRAASARL 241
            E+NV V CSNC  +I+ +R+A H+E+C+G+GGR SSRAA+ARL
Sbjct:   44 EKNVVVECSNCGGSIAGTRFAPHLERCVGKGGRSSSRAATARL 86          
The following BLAST results are available for this feature:
BLAST of Gcaud2622.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J441_9FLOR1.180e-16177.91SAGA-associated factor 11 n=1 Tax=Gracilariopsis c... [more]
R7QND3_CHOCR3.110e-4548.46SAGA-associated factor 11 n=1 Tax=Chondrus crispus... [more]
A0A5J4YRK6_PORPP2.920e-765.96SAGA-associated factor 11 n=1 Tax=Porphyridium pur... [more]
A0A7S1XIN0_9RHOD9.930e-760.47SAGA-associated factor 11 (Fragment) n=1 Tax=Eryth... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013246SAGA complex, Sgf11 subunitPFAMPF08209Sgf11coord: 201..231
e-value: 1.5E-12
score: 46.8
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 203..231
e-value: 6.6E-6
score: 27.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..271
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 299..314
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..326
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..51
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..326
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_205_length_37462_cov_4.544219contigNODE_205_length_37462_cov_4.544219:6702..7682 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2622.t1Gcaud2622.t1Gracilaria caudata M_176_S67 malemRNANODE_205_length_37462_cov_4.544219 6702..7682 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2622.t1 ID=Gcaud2622.t1|Name=Gcaud2622.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=327bp
MAPRKRRSRTTTVSVAPSAAGSATNSHASSPSSHKHSRSDNDSTDRMVVP
SFVPPKTEIAPALRLKIRPLREITAAETPWPSVINQYSRAETVEEIDIRS
AKCAQVYQDAHNFIVESESKDSNFTVVDVALRLYEHMIKWAVTEVVVQFK
RQAYLAHETKRCTSAFAKVRVADEKGRHEKKRLARVVPGFYGSCLLYSER
NVTVVCSNCTSNISASRYAQHVEKCLGRGGRMSSRAASARLRASAERAEK
ESQAEVDESPPRRRRHTSNGGNDRSTDAADMSAFSTGASKRRRMSPVPSV
GSTGVSQASTYGRGLPPSGRTRMSPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013246SAGA_su_Sgf11