Gcaud1938.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1938.t1
Unique NameGcaud1938.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length198
Homology
BLAST of Gcaud1938.t1 vs. uniprot
Match: A0A2V3ISM9_9FLOR (Pre-mRNA-splicing factor 38 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISM9_9FLOR)

HSP 1 Score: 320 bits (820), Expect = 1.690e-109
Identity = 161/197 (81.73%), Postives = 179/197 (90.86%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSALCL 197
            MAN+TDE ALH+LGYDPQ+HIPPITRSSIH SPYWNRHLFGVSVADLVPLAVSLS++S T G MHTPSPFLCMLLKLLQLAPTTPEISVYLDQT FKYPR+LAAFYIRLMETPA V+RLLEPLLSD+RKLV R+ DV+  +  VS+  T+ IVHVD+++DALLT+RELFG+PLPRLPPRPLLVETAQLS RKSAL L
Sbjct:    1 MANTTDEGALHRLGYDPQNHIPPITRSSIHRSPYWNRHLFGVSVADLVPLAVSLSYISGTQGPMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTHFKYPRILAAFYIRLMETPAAVHRLLEPLLSDYRKLVARSVDVAPFMPTVSTNGTFVIVHVDDIVDALLTQRELFGIPLPRLPPRPLLVETAQLSARKSALAL 197          
BLAST of Gcaud1938.t1 vs. uniprot
Match: R7QB68_CHOCR (Pre-mRNA-splicing factor 38 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB68_CHOCR)

HSP 1 Score: 178 bits (452), Expect = 1.060e-53
Identity = 102/196 (52.04%), Postives = 128/196 (65.31%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVET-AQLSPRKSAL 195
            MAN TD  ALH  G DPQ+ + P  R S++LS +WN   FGV++AD+VPLA  L  +SA       P+PFLC+LLKLLQL+P  PEI+V+L Q DFKY R+L AFY+RL   P  VY LLEPLL+D RK+VVR            ++  + IVHVDELID LL E  + G+ LPRLPPR ++ E+  QL PR   L
Sbjct:    1 MANKTDTYALHSRGTDPQNLLEPSLRHSVYLSRFWNESCFGVTLADVVPLAARLDRISAVTAP---PTPFLCLLLKLLQLSPEEPEIAVFLTQNDFKYARLLGAFYVRLALPPPRVYALLEPLLADLRKIVVREG----------ASAEHAIVHVDELIDRLLREHLVVGITLPRLPPRHVVEESFVQLPPRPQLL 183          
BLAST of Gcaud1938.t1 vs. uniprot
Match: M2XT21_GALSU (Pre-mRNA-splicing factor 38 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XT21_GALSU)

HSP 1 Score: 150 bits (379), Expect = 1.520e-41
Identity = 86/195 (44.10%), Postives = 113/195 (57.95%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSAL 195
            MAN TD  A+H  G+DPQ  I  ITR  I+   YW    FG++   LV  A  L+++   +G +  P+PF+C++LKLLQL+P    I  YL Q  FKY   LAAFY RL+     VYR LEPL  DFRKL +R  +             Y ++HVDE ID LL + ++  + LPRLP R +L+E   L+PRKS L
Sbjct:    1 MANRTDPLAIHAHGFDPQFLIDKITREKIYQCAYWKAECFGLTAETLVDKAAELTYVGGLYGPLKKPTPFICLILKLLQLSPDKEIIHQYLQQKKFKYLTALAAFYWRLVGNGTDVYRWLEPLYEDFRKLRIRREN------------KYELIHVDECIDELLQKEDVCDIKLPRLPNRNVLMEDRLLAPRKSKL 183          
BLAST of Gcaud1938.t1 vs. uniprot
Match: A0A075AYX0_ROZAC (Pre-mRNA-splicing factor 38 n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AYX0_ROZAC)

HSP 1 Score: 144 bits (364), Expect = 1.160e-39
Identity = 84/195 (43.08%), Postives = 116/195 (59.49%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSAL 195
            MAN T   A    G DPQ  I  ITR+ I+ S YW  + FG+++  LV  AV L H+    G  + P+PFLC++LK+LQLAPT   +  ++   D+KY R L  FY+RL+ +   +YR LEPLL+D+RKL +R  D           ++YTI+H+DE +D LLT+   F   LPR+  R +L ET QL+ R S L
Sbjct:    1 MANRTAVDAFQVHGVDPQFLIEKITRTRIYESQYWKENCFGLNIETLVDKAVKLDHIGGLFGT-NIPTPFLCLVLKMLQLAPTKDIVFEFVRNGDYKYVRALGVFYLRLVGSGLEIYRELEPLLADYRKLRLRNKD-----------RSYTIIHMDEFVDELLTQERTFDTILPRIVKRHVLAETGQLNFRTSLL 183          
BLAST of Gcaud1938.t1 vs. uniprot
Match: A0A6B2LH51_9EUKA (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LH51_9EUKA)

HSP 1 Score: 143 bits (361), Expect = 1.900e-39
Identity = 82/195 (42.05%), Postives = 111/195 (56.92%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSAL 195
            MAN TD +AL   G DPQ+ I  I R+ IH + YWN   FG++   +V  A+ L H+  T+G     SPFLC+LLK LQL+P       ++D  D++Y R L AFY+RL+     +Y+ LEPL +DFR++  R  D            TY++ HVDE +D LLTE  +  V LPR+ PR +L E   L  R S L
Sbjct:    1 MANRTDPSALSIHGTDPQNLIEKIVRNRIHAAKYWNEECFGLTAVTMVDKAMELKHVGGTYGGNKKASPFLCLLLKFLQLSPEKEIAIAFIDNDDYRYMRCLGAFYLRLIGKAVDIYQYLEPLYNDFRRIRFRNPD-----------GTYSVTHVDEFVDQLLTEDRVCDVILPRILPRRVLEEIGVLQRRVSIL 184          
BLAST of Gcaud1938.t1 vs. uniprot
Match: A0A316ZBR8_9BASI (Pre-mRNA-splicing factor 38 n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZBR8_9BASI)

HSP 1 Score: 145 bits (365), Expect = 3.420e-39
Identity = 85/195 (43.59%), Postives = 118/195 (60.51%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSAL 195
            MAN T + AL+  G +PQH +  + R+ I+ SPYW  H F ++ A +VP+A  L ++  ++GA   PSPFLC+LLKLLQL P    I  Y+   +FKY R LAA Y+R+      VY +LEP+L+D+RKL  R  D+S          +Y I H+DE +D+LLTE  +  + LPRL  R +L E   L+PR S L
Sbjct:    1 MANQTLKGALNVRGTNPQHLVEKVVRARIYDSPYWKEHCFALTAASIVPVAARLPYIGGSYGAQR-PSPFLCLLLKLLQLQPARAIILEYIAAPEFKYLRALAAMYVRMTFPSLEVYEVLEPMLNDYRKL--RWRDMSG---------SYRITHMDEFVDSLLTEERVADLILPRLTRRDVLEEGEGLAPRASRL 183          
BLAST of Gcaud1938.t1 vs. uniprot
Match: A0A5A8D3W8_CAFRO (Pre-mRNA-splicing factor 38 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8D3W8_CAFRO)

HSP 1 Score: 141 bits (356), Expect = 1.440e-38
Identity = 80/195 (41.03%), Postives = 111/195 (56.92%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSAL 195
            MAN TD  A +  G DPQ+ +  + R  I  S YW  H FG+    L+  AV + H+ +T G +  P+PF+C++LKLLQ+ P    +  Y+ Q + KY R L AFY RL+  P  VY++LEPL +DFRKL VR            S   + + H+DEL+D LL E   + + LP LP R LL  + +L+PR S L
Sbjct:    1 MANRTDVLAQNVHGTDPQNLVEHLLRQRIQNSRYWKEHCFGLDAETLIEKAVKIDHIGSTFGGIRKPTPFICLVLKLLQIQPPLDAVIEYVKQDEHKYLRALGAFYTRLVGDPVQVYKVLEPLYNDFRKLAVR------------SPSGWELSHMDELVDMLLREEFAWELTLPMLPRRRLLESSGKLAPRVSLL 183          
BLAST of Gcaud1938.t1 vs. uniprot
Match: A0A2P2IFV2_9CRUS (Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IFV2_9CRUS)

HSP 1 Score: 139 bits (349), Expect = 3.180e-38
Identity = 77/179 (43.02%), Postives = 103/179 (57.54%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPR 179
            MAN+TD AA +  G +PQ+ I  I R  I+ S YW  H F ++   +V  A+ L  +  T G    PS FLC+LLK+LQ+ P    I  Y+   D+KY R++ A Y+RL+  P  +Y  LEPLL D+RK+ VR  D             Y++ HVDE+IDALLTE   F + LPRLP R
Sbjct:    7 MANTTDPAARNVHGTNPQYLIEKIVRMKIYDSMYWKEHCFALNAESMVDKAIELKAVGGTFGGNRKPSNFLCLLLKMLQIQPEKDIIIEYISNDDYKYVRMIGAVYLRLVGRPLDIYHYLEPLLHDYRKIRVRNPD-----------GKYSLTHVDEIIDALLTESHYFNITLPRLPAR 174          
BLAST of Gcaud1938.t1 vs. uniprot
Match: A0A5A8CJ88_CAFRO (Pre-mRNA-splicing factor 38 n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CJ88_CAFRO)

HSP 1 Score: 141 bits (356), Expect = 7.300e-38
Identity = 80/195 (41.03%), Postives = 111/195 (56.92%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSAL 195
            MAN TD  A +  G DPQ+ +  + R  I  S YW  H FG+    L+  AV + H+ +T G +  P+PF+C++LKLLQ+ P    +  Y+ Q + KY R L AFY RL+  P  VY++LEPL +DFRKL VR            S   + + H+DEL+D LL E   + + LP LP R LL  + +L+PR S L
Sbjct:    1 MANRTDVLAQNVHGTDPQNLVEHLLRQRIQNSRYWKEHCFGLDAETLIEKAVKIDHIGSTFGGIRKPTPFICLVLKLLQIQPPLDAVIEYVKQDEHKYLRALGAFYTRLVGDPVQVYKVLEPLYNDFRKLAVR------------SPSGWELSHMDELVDMLLREEFAWELTLPMLPRRRLLESSGKLAPRVSLL 183          
BLAST of Gcaud1938.t1 vs. uniprot
Match: A0A0L6VIQ5_9BASI (Pre-mRNA-splicing factor 38 n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VIQ5_9BASI)

HSP 1 Score: 140 bits (354), Expect = 8.100e-38
Identity = 91/198 (45.96%), Postives = 115/198 (58.08%), Query Frame = 0
Query:    1 MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPLAV-SLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPRVLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTYTIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSALCL 197
            MAN+T   AL   G +PQ  I  I RS I+ S YW    FG++   ++  AV  L++L++T  A   PSPF+C+LLKLLQL P    I  YL   +FKY R LAAFY+RL  TP  VY+ LEP+L D+RKL +R  D S           Y ++  DE ID LLTE  +F V LPRL  R +L E   L PRKS L +
Sbjct:    1 MANTTARGALSIHGTNPQFLIDKILRSRIYESEYWKESCFGLTAESIIDKAVFDLNYLASTFTANLRPSPFICLLLKLLQLQPEKEIILEYLRAEEFKYLRALAAFYVRLTFTPINVYQTLEPMLQDYRKLRIRELDGS-----------YGLMTFDEFIDKLLTETIVFEVVLPRLTSRKVLEELESLPPRKSTLAV 187          
The following BLAST results are available for this feature:
BLAST of Gcaud1938.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISM9_9FLOR1.690e-10981.73Pre-mRNA-splicing factor 38 n=1 Tax=Gracilariopsis... [more]
R7QB68_CHOCR1.060e-5352.04Pre-mRNA-splicing factor 38 n=1 Tax=Chondrus crisp... [more]
M2XT21_GALSU1.520e-4144.10Pre-mRNA-splicing factor 38 n=1 Tax=Galdieria sulp... [more]
A0A075AYX0_ROZAC1.160e-3943.08Pre-mRNA-splicing factor 38 n=1 Tax=Rozella allomy... [more]
A0A6B2LH51_9EUKA1.900e-3942.05Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Arc... [more]
A0A316ZBR8_9BASI3.420e-3943.59Pre-mRNA-splicing factor 38 n=1 Tax=Tilletiopsis w... [more]
A0A5A8D3W8_CAFRO1.440e-3841.03Pre-mRNA-splicing factor 38 n=1 Tax=Cafeteria roen... [more]
A0A2P2IFV2_9CRUS3.180e-3843.02Pre-mRNA-splicing factor 38 (Fragment) n=1 Tax=Hir... [more]
A0A5A8CJ88_CAFRO7.300e-3841.03Pre-mRNA-splicing factor 38 n=2 Tax=Cafeteria roen... [more]
A0A0L6VIQ5_9BASI8.100e-3845.96Pre-mRNA-splicing factor 38 n=1 Tax=Puccinia sorgh... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005037Pre-mRNA-splicing factor 38PFAMPF03371PRP38coord: 15..179
e-value: 4.7E-45
score: 153.6
IPR005037Pre-mRNA-splicing factor 38PANTHERPTHR23142UNCHARACTERIZEDcoord: 1..195
NoneNo IPR availablePANTHERPTHR23142:SF1PRE-MRNA-SPLICING FACTOR 38Acoord: 1..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_105_length_50300_cov_4.471768contigNODE_105_length_50300_cov_4.471768:40426..41019 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1938.t1Gcaud1938.t1Gracilaria caudata M_176_S67 malemRNANODE_105_length_50300_cov_4.471768 40426..41019 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1938.t1 ID=Gcaud1938.t1|Name=Gcaud1938.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPL
AVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPR
VLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTY
TIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSALCL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005037PRP38