Gcaud1938.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1938.t1
Unique Name	Gcaud1938.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	198

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:40426..41019 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703323.1
Preferred name	PRPF38A
PFAMs	PRP38,PRP38_assoc
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12849,ko:K12851
KEGG Pathway	ko03040,map03040
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005681,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007346,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010389,GO:0010467,GO:0010564,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0030532,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071011,GO:0071704,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1990904
Evalue	8.41e-44
EggNOG OGs	KOG2889@1\|root,KOG2889@2759\|Eukaryota
Description	RNA splicing
COG category	BK
BRITE	ko00000,ko00001,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1938	Gcaud1938	Gracilaria caudata M_176_S67 male	gene	NODE_105_length_50300_cov_4.471768 40426..41019 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1938.t1.stop1	Gcaud1938.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_105_length_50300_cov_4.471768 40426..40428 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1938.t1.CDS1	Gcaud1938.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_105_length_50300_cov_4.471768 40426..41019 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1938.t1.exon1	Gcaud1938.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_105_length_50300_cov_4.471768 40426..41019 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1938.t1.start1	Gcaud1938.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_105_length_50300_cov_4.471768 41017..41019 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1938.t1	Gcaud1938.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_105_length_50300_cov_4.471768 40426..41019 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_105_length_50300_cov_4.471768:40426..41019-
coding sequence from alignment at NODE_105_length_50300_cov_4.471768:40426..41019-

mRNA sequence

>Gcaud1938.t1 ID=Gcaud1938.t1|Name=Gcaud1938.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=198bp
MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPL
AVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPR
VLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTY
TIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSALCL*

spliced messenger RNA

>Gcaud1938.t1 ID=Gcaud1938.t1|Name=Gcaud1938.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=594bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:40426..41019- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAATAGTACCGATGAGGCTGCGCTCCACAAGTTGGGATACGATCC
TCAGCACCACATACCACCTATCACGCGCTCGTCCATTCATCTTAGCCCAT
ACTGGAATCGACATCTGTTTGGAGTCTCCGTCGCCGATCTCGTGCCACTA
GCTGTCTCGCTCTCTCATCTCTCCGCCACCCATGGTGCCATGCATACGCC
AAGTCCCTTTTTGTGTATGCTTCTCAAACTTCTTCAACTTGCTCCCACTA
CGCCAGAGATTAGTGTGTACTTAGATCAAACCGATTTCAAGTATCCACGC
GTGCTTGCTGCGTTCTATATTCGCTTGATGGAAACGCCTGCCGTTGTCTA
TCGATTGTTAGAACCTTTGCTGTCTGATTTTCGCAAGCTTGTGGTTCGTG
CGTCTGATGTGAGCTCTGTCATTTGCGGGGTTTCTTCCACTCAGACCTAT
ACTATCGTGCACGTTGACGAGCTCATTGATGCTCTGCTCACTGAGCGCGA
ACTCTTTGGTGTACCACTTCCACGTCTTCCACCGCGTCCATTGCTAGTCG
AGACTGCGCAACTCTCGCCAAGAAAATCAGCCCTTTGCCTATAA

protein sequence of Gcaud1938.t1

>Gcaud1938.t1 ID=Gcaud1938.t1|Name=Gcaud1938.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
MANSTDEAALHKLGYDPQHHIPPITRSSIHLSPYWNRHLFGVSVADLVPL
AVSLSHLSATHGAMHTPSPFLCMLLKLLQLAPTTPEISVYLDQTDFKYPR
VLAAFYIRLMETPAVVYRLLEPLLSDFRKLVVRASDVSSVICGVSSTQTY
TIVHVDELIDALLTERELFGVPLPRLPPRPLLVETAQLSPRKSALCL*

mRNA from alignment at NODE_105_length_50300_cov_4.471768:40426..41019-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1938.t1 ID=Gcaud1938.t1|Name=Gcaud1938.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=594bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:40426..41019- (Gracilaria caudata M_176_S67 male)
ATGGCCAATAGTACCGATGAGGCTGCGCTCCACAAGTTGGGATACGATCC
TCAGCACCACATACCACCTATCACGCGCTCGTCCATTCATCTTAGCCCAT
ACTGGAATCGACATCTGTTTGGAGTCTCCGTCGCCGATCTCGTGCCACTA
GCTGTCTCGCTCTCTCATCTCTCCGCCACCCATGGTGCCATGCATACGCC
AAGTCCCTTTTTGTGTATGCTTCTCAAACTTCTTCAACTTGCTCCCACTA
CGCCAGAGATTAGTGTGTACTTAGATCAAACCGATTTCAAGTATCCACGC
GTGCTTGCTGCGTTCTATATTCGCTTGATGGAAACGCCTGCCGTTGTCTA
TCGATTGTTAGAACCTTTGCTGTCTGATTTTCGCAAGCTTGTGGTTCGTG
CGTCTGATGTGAGCTCTGTCATTTGCGGGGTTTCTTCCACTCAGACCTAT
ACTATCGTGCACGTTGACGAGCTCATTGATGCTCTGCTCACTGAGCGCGA
ACTCTTTGGTGTACCACTTCCACGTCTTCCACCGCGTCCATTGCTAGTCG
AGACTGCGCAACTCTCGCCAAGAAAATCAGCCCTTTGCCTATAA

Coding sequence (CDS) from alignment at NODE_105_length_50300_cov_4.471768:40426..41019-

>Gcaud1938.t1 ID=Gcaud1938.t1|Name=Gcaud1938.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=594bp|location=Sequence derived from alignment at NODE_105_length_50300_cov_4.471768:40426..41019- (Gracilaria caudata M_176_S67 male)
ATGGCCAATAGTACCGATGAGGCTGCGCTCCACAAGTTGGGATACGATCC
TCAGCACCACATACCACCTATCACGCGCTCGTCCATTCATCTTAGCCCAT
ACTGGAATCGACATCTGTTTGGAGTCTCCGTCGCCGATCTCGTGCCACTA
GCTGTCTCGCTCTCTCATCTCTCCGCCACCCATGGTGCCATGCATACGCC
AAGTCCCTTTTTGTGTATGCTTCTCAAACTTCTTCAACTTGCTCCCACTA
CGCCAGAGATTAGTGTGTACTTAGATCAAACCGATTTCAAGTATCCACGC
GTGCTTGCTGCGTTCTATATTCGCTTGATGGAAACGCCTGCCGTTGTCTA
TCGATTGTTAGAACCTTTGCTGTCTGATTTTCGCAAGCTTGTGGTTCGTG
CGTCTGATGTGAGCTCTGTCATTTGCGGGGTTTCTTCCACTCAGACCTAT
ACTATCGTGCACGTTGACGAGCTCATTGATGCTCTGCTCACTGAGCGCGA
ACTCTTTGGTGTACCACTTCCACGTCTTCCACCGCGTCCATTGCTAGTCG
AGACTGCGCAACTCTCGCCAAGAAAATCAGCCCTTTGCCTATAA