Gcaud1930.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud1930.t1
Unique Name	Gcaud1930.t1
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	191

Homology

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A2V3IPX2_9FLOR (Polyadenylate-binding protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX2_9FLOR)

HSP 1 Score: 179 bits (455), Expect = 2.140e-53
Identity = 94/124 (75.81%), Postives = 103/124 (83.06%), Query Frame = 0

Query:   57 EEEKPATDLDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            +E+KP TDLD+ELEAMKKRLLEMEQESFP++AE + DP+++    A SA  NAAT    D N PR  I  DDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTG PKGYA
Sbjct:   57 DEDKPGTDLDTELEAMKKRLLEMEQESFPVNAENNADPNSEGGPTAQSAPKNAATARAADVNQPRSPIGGDDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGTPKGYA 180

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BLAST of Gcaud1930.t1 vs. uniprot
Match: UPI001E1D9E59 (polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9E59)

HSP 1 Score: 103 bits (257), Expect = 6.530e-24
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 0

Query:   47 PANEQPEDNHEEEKPATDLDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            P + +P D   E+ P  D+D+ELEAMKKRL EME E+  + A G+G  D        SAAT  A ++  D      G +     A++DARSIYVGNVDY+AT EEL  +F +CGTINRVTI+ +K TG PKG+A
Sbjct:   45 PPDVEPYDQEGEDDPE-DVDAELEAMKKRLKEMEDEANAVKAAGAGGTDG------TSAATGRADRMGEDYGASLIGPS-----AESDARSIYVGNVDYAATPEELQAHFADCGTINRVTIMCNKATGTPKGFA 166

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A0G4IXZ7_PLABS (RRM domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IXZ7_PLABS)

HSP 1 Score: 88.2 bits (217), Expect = 2.510e-18
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 0

Query:   67 SELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAV--ADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            +++EAMK+R+ EME+E+  + A  + DP +  +     AA++A+ K   D     G  AA   V   D+D RS+YVGNVDY  T EEL  +F+ CG +NR+TI+  K TG PKGYA
Sbjct:   19 TDVEAMKRRVKEMEEEAAKIEATIAADPSSTTLPA--GAASDASGK---DAGAASGSNAASVVVNGPDSDLRSVYVGNVDYGTTPEELQTFFQSCGVVNRITIVCDKMTGHPKGYA 129

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A7S0S4J0_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S4J0_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 3.800e-18
Identity = 60/133 (45.11%), Postives = 74/133 (55.64%), Query Frame = 0

Query:   48 ANEQPEDNHEEEKPATDLDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            A+E P D   E+  A     ELEAMKK+L EME+E+  L A  +G    D    + S          V+P              +ADARSIYVGNVDYS T EEL ++F+ CGT+NRVTI+T K  G PKGYA
Sbjct:   20 ADEIPVDGGAEDFGAGQSAEELEAMKKKLKEMEEEAARLKALQAGGGSADGAGASGS----------VEPGSKE----------EADARSIYVGNVDYSCTPEELQQHFQSCGTVNRVTILTDK-FGNPKGYA 131

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A7S0ZAS5_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZAS5_9RHOD)

HSP 1 Score: 87.0 bits (214), Expect = 8.520e-18
Identity = 50/116 (43.10%), Postives = 67/116 (57.76%), Query Frame = 0

Query:   65 LDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            +D+EL AMK+RL EME E+  LS   +G   ND   G ++                       D+    DA+S+YVGNVDY AT EEL  +F++CGT+NRVTI+ +K TG PKG+A
Sbjct:   52 VDAELAAMKQRLKEMEMEAMKLSELQNGSGANDGNGGESTKLNQ-------------------DSQETIDAKSVYVGNVDYGATPEELQIHFQDCGTVNRVTILCNKFTGHPKGFA 148

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A2G8STB2_9APHY (RRM domain-containing protein n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8STB2_9APHY)

HSP 1 Score: 86.3 bits (212), Expect = 1.330e-17
Identity = 60/127 (47.24%), Postives = 73/127 (57.48%), Query Frame = 0

Query:   54 DNHEEEKPATDLDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            DN EEE+     DSE+  MKKR+ EME+E+  L                 SAA  A         VP   +  ++  A ADARSIYVGNVDYSAT EE+ ++F+ CGTINRVTI+  K TG PKGYA
Sbjct:   21 DNAEEEE-----DSEILLMKKRVEEMEREANKLRE-------------LQSAAEKAEQSAQGSEQVP---METEEDKAAADARSIYVGNVDYSATPEEIQQHFQSCGTINRVTILCDKFTGHPKGYA 126

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A1A6A6U5_9TREE (Polyadenylate-binding protein 2 n=4 Tax=Kwoniella TaxID=490731 RepID=A0A1A6A6U5_9TREE)

HSP 1 Score: 86.7 bits (213), Expect = 1.930e-17
Identity = 55/118 (46.61%), Postives = 70/118 (59.32%), Query Frame = 0

Query:   65 LDSELEAMKKRLLEMEQESFPL-SAEGSGDPDNDAIAGANSAATNA-ATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            +D EL  M+ RL EME+E   L S  GS  P+    +GAN  AT   A +           +  +DA A  D+RS+Y+GNVDY AT EE+  +F+ CGTINRVTI+  K TG PKGYA
Sbjct:   18 VDEELRLMQARLAEMEEEKNALVSNRGSSTPNP---SGANGTATGTGAGEASETHEGNEASMEDEDAPAAVDSRSVYIGNVDYGATPEEIQAHFQACGTINRVTILCDKFTGHPKGYA 132

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A3P3YFN4_PLABS (RRM domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YFN4_PLABS)

HSP 1 Score: 88.2 bits (217), Expect = 4.180e-17
Identity = 51/116 (43.97%), Postives = 72/116 (62.07%), Query Frame = 0

Query:   67 SELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAV--ADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            +++EAMK+R+ EME+E+  + A  + DP +  +     AA++A+ K   D     G  AA   V   D+D RS+YVGNVDY  T EEL  +F+ CG +NR+TI+  K TG PKGYA
Sbjct:   19 TDVEAMKRRVKEMEEEAAKIEATIAADPSSTTLPA--GAASDASGK---DAGAASGSNAASVVVNGPDSDLRSVYVGNVDYGTTPEELQTFFQSCGVVNRITIVCDKMTGHPKGYA 129

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A1Y2CJG4_9FUNG (RNA-binding domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CJG4_9FUNG)

HSP 1 Score: 83.6 bits (205), Expect = 1.150e-16
Identity = 53/125 (42.40%), Postives = 70/125 (56.00%), Query Frame = 0

Query:   58 EEKPATD--LDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            +EKP  D  +D E+ AMK R+ +ME+E+  L  +     D  + AGA + A     K                   D DARS+YVGNVDYS+T EEL  +F+ CGTINR+TI+  K TG PKG+A
Sbjct:    3 DEKPIVDEEMDDEIVAMKARVQQMEEEAAKLK-QMQEQVDQTSNAGATTDAEPITAK------------------EDIDARSVYVGNVDYSSTPEELQSHFQSCGTINRITILCDKFTGQPKGFA 108

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BLAST of Gcaud1930.t1 vs. uniprot
Match: A0A250WX21_9CHLO (RRM domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WX21_9CHLO)

HSP 1 Score: 84.0 bits (206), Expect = 1.410e-16
Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 0

Query:   61 PATDLDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIAGANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVEELSKYFEECGTINRVTIITHKPTGAPKGYA 180
            PA     ELEAMKK+L EME E+  L +           AG ++ A          P    G    DDA A+ DARS++VGNVDYS T EEL ++F+ CGT+NRVTI+T K  G PK YA
Sbjct:   30 PADQSLKELEAMKKKLQEMEAEAALLKS---------LQAGTSTGA----------PGSDSGAALDDDAKAEVDARSVFVGNVDYSCTPEELQQHFQACGTVNRVTILTDK-FGNPKAYA 129

The following BLAST results are available for this feature:

BLAST of Gcaud1930.t1 vs. uniprot

BLAST of Gcaud1930.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IPX2_9FLOR	2.140e-53	75.81	Polyadenylate-binding protein 1 n=1 Tax=Gracilario...	[more]
UPI001E1D9E59	6.530e-24	49.25	polyadenylate-binding protein 2-like n=1 Tax=Merce...	[more]
A0A0G4IXZ7_PLABS	2.510e-18	43.97	RRM domain-containing protein n=1 Tax=Plasmodiopho...	[more]
A0A7S0S4J0_9CHLO	3.800e-18	45.11	Hypothetical protein (Fragment) n=1 Tax=Chlamydomo...	[more]
A0A7S0ZAS5_9RHOD	8.520e-18	43.10	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]
A0A2G8STB2_9APHY	1.330e-17	47.24	RRM domain-containing protein n=1 Tax=Ganoderma si...	[more]
A0A1A6A6U5_9TREE	1.930e-17	46.61	Polyadenylate-binding protein 2 n=4 Tax=Kwoniella ...	[more]
A0A3P3YFN4_PLABS	4.180e-17	43.97	RRM domain-containing protein n=1 Tax=Plasmodiopho...	[more]
A0A1Y2CJG4_9FUNG	1.150e-16	42.40	RNA-binding domain-containing protein n=1 Tax=Rhiz...	[more]
A0A250WX21_9CHLO	1.410e-16	45.83	RRM domain-containing protein n=1 Tax=Chlamydomona...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..190
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..80
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 53..180
None	No IPR available	PANTHER	PTHR23236:SF12	EUKARYOTIC INITIATION FACTOR 4B-RELATED	coord: 53..180
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 12..180 e-value: 1.4E-12 score: 49.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 138..180 e-value: 1.6E-8 score: 34.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 136..180 score: 9.950859
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 130..180

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_105_length_50300_cov_4.471768	contig	NODE_105_length_50300_cov_4.471768:25652..26667 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1930.t1	Gcaud1930.t1	Gracilaria caudata M_176_S67 male	mRNA	NODE_105_length_50300_cov_4.471768 25652..26667 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud1930.t1 ID=Gcaud1930.t1|Name=Gcaud1930.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=191bp
LKCSPNRLRGVVPETDVQEAETNIGSEKEAKPDQPNGKGHQGQKTDPANE
QPEDNHEEEKPATDLDSELEAMKKRLLEMEQESFPLSAEGSGDPDNDAIA
GANSAATNAATKVPVDPNVPRGGIAADDAVADADARSIYVGNVDYSATVE
ELSKYFEECGTINRVTIITHKPTGAPKGYAPSTEDNSKKN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom
IPR035979	RBD_domain_sf